Wall clock time and date at job start Tue Mar 31 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20926 * 124.56747 * 2 1 4 4 C 1.34160 * 112.19495 * 180.02562 * 3 2 1 5 5 C 1.48209 * 126.38375 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99929 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00345 * 0.02785 * 5 4 3 8 8 C 1.48159 * 127.02161 * 359.95284 * 7 5 4 9 9 C 1.55048 * 103.31127 * 141.01664 * 8 7 5 10 10 C 1.54151 * 102.73391 * 36.99451 * 9 8 7 11 11 C 1.47612 * 127.02736 * 180.02562 * 7 5 4 12 12 C 1.52498 * 110.05694 * 219.39060 * 10 9 8 13 13 C 1.53124 * 109.58496 * 178.26925 * 12 10 9 14 14 C 1.53120 * 109.32169 * 60.51981 * 13 12 10 15 15 N 1.46931 * 108.88193 * 304.91586 * 14 13 12 16 16 C 1.36940 * 120.68546 * 234.04723 * 15 14 13 17 17 H 1.08003 * 119.99853 * 27.35764 * 16 15 14 18 18 C 1.38813 * 120.00022 * 207.36904 * 16 15 14 19 19 N 1.31616 * 119.99859 * 17.23235 * 18 16 15 20 20 Si 1.86797 * 119.99926 * 197.23674 * 18 16 15 21 21 H 1.48501 * 109.47330 * 59.99496 * 20 18 16 22 22 H 1.48498 * 109.47087 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46661 * 299.99632 * 20 18 16 24 24 C 1.47036 * 118.63439 * 54.02340 * 15 14 13 25 25 C 1.36318 * 107.23293 * 0.26424 * 4 3 2 26 26 C 1.34834 * 124.57104 * 180.02562 * 2 1 3 27 27 O 1.21973 * 127.14579 * 359.96844 * 26 2 1 28 28 H 1.09000 * 109.47065 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46744 * 119.97803 * 1 2 3 30 30 H 1.09001 * 109.47011 * 239.97526 * 1 2 3 31 31 H 1.09006 * 110.65418 * 259.46967 * 8 7 5 32 32 H 1.08998 * 110.65496 * 22.39752 * 8 7 5 33 33 H 1.08998 * 110.76146 * 278.67971 * 9 8 7 34 34 H 1.09010 * 110.75539 * 155.30244 * 9 8 7 35 35 H 1.08994 * 109.97551 * 85.96341 * 11 7 5 36 36 H 1.08995 * 109.97157 * 324.68356 * 11 7 5 37 37 H 1.09005 * 109.44991 * 298.29966 * 12 10 9 38 38 H 1.09001 * 109.44851 * 58.23801 * 12 10 9 39 39 H 1.08997 * 109.50079 * 180.44270 * 13 12 10 40 40 H 1.09004 * 109.50010 * 300.54417 * 13 12 10 41 41 H 1.09007 * 109.57031 * 185.09664 * 14 13 12 42 42 H 1.08994 * 109.57794 * 64.73979 * 14 13 12 43 43 H 0.97002 * 119.99669 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.58343 * 187.41618 * 24 15 14 45 45 H 1.08994 * 109.58337 * 66.99760 * 24 15 14 46 46 H 1.07994 * 128.00111 * 179.73928 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4615 0.7083 -0.0006 5 6 4.5759 1.6854 -0.0013 6 8 5.7263 1.2947 -0.0022 7 7 4.3132 3.0073 -0.0008 8 6 2.9791 3.6517 -0.0006 9 6 3.1677 4.8627 0.9490 10 6 4.6025 5.3261 0.6278 11 6 5.2958 4.1089 -0.0019 12 6 5.3177 5.7397 1.9096 13 6 6.7546 6.1568 1.5839 14 6 6.7308 7.3452 0.6186 15 7 5.9357 6.9825 -0.5626 16 6 6.4596 7.1044 -1.8219 17 1 7.5267 7.0324 -1.9722 18 6 5.6191 7.3208 -2.9053 19 7 4.3880 7.7430 -2.7091 20 14 6.2353 7.0128 -4.6416 21 1 6.6384 5.5901 -4.7787 22 1 5.1529 7.3158 -5.6120 23 1 7.4044 7.8870 -4.9142 24 6 4.5662 6.4854 -0.3646 25 6 3.5770 -0.6499 -0.0069 26 6 2.2301 -1.1103 -0.0005 27 8 1.8474 -2.2684 -0.0005 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5135 -0.8902 30 1 -0.3633 -0.5142 0.8898 31 1 2.7140 3.9871 -1.0033 32 1 2.2227 2.9697 0.3878 33 1 3.0858 4.5532 1.9909 34 1 2.4477 5.6486 0.7205 35 1 5.5962 4.3388 -1.0241 36 1 6.1681 3.8302 0.5892 37 1 4.7907 6.5783 2.3649 38 1 5.3321 4.9000 2.6044 39 1 7.2669 6.4446 2.5019 40 1 7.2796 5.3216 1.1202 41 1 7.7486 7.5879 0.3131 42 1 6.2804 8.2069 1.1112 43 1 3.8006 7.8938 -3.4662 44 1 4.1620 6.1394 -1.3160 45 1 3.9407 7.2856 0.0311 46 1 4.4813 -1.2403 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040180035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:46 Heat of formation + Delta-G solvation = 44.949854 kcal Electronic energy + Delta-G solvation = -30431.909645 eV Core-core repulsion = 26327.405083 eV Total energy + Delta-G solvation = -4104.504562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.27628 -40.32394 -38.59099 -38.31452 -35.98755 -34.51798 -33.23107 -32.41937 -31.69330 -30.11663 -29.06236 -28.38846 -26.11530 -25.41348 -23.82049 -23.66495 -22.68524 -22.11446 -20.52774 -19.98529 -18.59136 -18.29164 -18.20517 -17.21845 -16.90428 -16.10977 -15.73479 -15.36856 -15.05420 -14.78049 -14.32507 -14.12352 -13.99360 -13.95893 -13.84373 -13.62703 -13.33909 -13.24375 -13.14559 -12.75515 -12.72915 -12.45959 -11.95675 -11.77475 -11.27627 -11.07716 -11.00743 -10.72322 -10.61135 -10.48108 -10.41163 -10.25605 -10.20592 -10.17950 -9.88815 -9.58941 -9.51055 -8.77345 -8.66225 -8.55128 -6.76719 -5.88324 -3.29285 0.39927 1.37348 2.42868 2.57738 2.90814 3.17287 3.33752 3.39515 3.42293 4.19934 4.42663 4.44669 4.74307 4.76310 4.77656 4.84118 4.90784 5.05460 5.07277 5.31544 5.39919 5.43068 5.50534 5.55318 5.60560 5.65246 5.74252 5.92663 5.96790 5.99344 6.04772 6.12965 6.24773 6.31527 6.40436 6.53441 6.62447 6.73943 6.79705 6.93055 7.16052 7.31271 7.41605 7.48122 7.71093 7.72667 7.86139 8.35048 9.12384 9.75430 10.31988 11.20309 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003538 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.364860 B = 7912.991364 C = 8584.538076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.456 5.456 3 O -0.002 6.002 4 C 0.045 3.955 5 C 0.610 3.390 6 O -0.503 6.503 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.122 4.122 10 C -0.094 4.094 11 C 0.126 3.874 12 C -0.094 4.094 13 C -0.139 4.139 14 C 0.144 3.856 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.898 3.102 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.187 3.813 25 C -0.244 4.244 26 C 0.482 3.518 27 O -0.526 6.526 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -8.700 8.642 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.220 5.220 3 O -0.012 6.012 4 C -0.013 4.013 5 C 0.394 3.606 6 O -0.379 6.379 7 N -0.332 5.332 8 C -0.028 4.028 9 C -0.160 4.160 10 C -0.097 4.097 11 C 0.005 3.995 12 C -0.132 4.132 13 C -0.178 4.178 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.728 3.272 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.061 3.939 25 C -0.269 4.269 26 C 0.280 3.720 27 O -0.407 6.407 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.042 0.958 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.164 -9.333 8.484 15.024 hybrid contribution 0.207 -0.099 -0.965 0.992 sum -7.958 -9.432 7.518 14.450 Atomic orbital electron populations 1.22118 0.70745 1.05243 1.04655 1.46136 1.05946 1.00067 1.69870 1.84161 1.15401 1.20653 1.81025 1.23531 0.81488 0.96270 1.00006 1.16273 0.85339 0.80072 0.78932 1.90891 1.18227 1.77773 1.50996 1.48934 1.10814 1.04191 1.69284 1.22865 0.83751 0.94726 1.01434 1.22720 0.97913 0.96848 0.98566 1.21909 0.93044 0.96991 0.97745 1.22374 0.90671 0.83167 1.03273 1.21372 0.96407 0.99895 0.95500 1.22088 0.95918 1.00632 0.99191 1.20908 0.95728 0.93223 0.88373 1.44061 1.12134 1.73885 1.01269 1.19152 0.92394 1.43507 0.83106 0.91615 1.24981 0.96828 0.99385 0.98168 1.70004 1.07177 1.47587 1.29976 0.86437 0.77869 0.78433 0.84505 1.20972 1.21626 1.20811 1.20804 0.86472 0.90106 0.96508 1.23290 0.99663 0.93280 1.10707 1.18315 0.86671 0.85481 0.81511 1.90955 1.79123 1.15905 1.54707 0.88238 0.89245 0.89277 0.89665 0.90088 0.91265 0.89372 0.89082 0.90561 0.92167 0.93445 0.92989 0.92131 0.92820 0.96432 0.93582 0.89116 0.95827 0.79046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.68 11.18 59.85 0.67 1.35 16 2 N -0.46 -4.92 3.68 -69.77 -0.26 -5.18 16 3 O 0.00 -0.02 8.06 16.86 0.14 0.11 16 4 C 0.05 0.59 7.07 -36.18 -0.26 0.33 16 5 C 0.61 9.32 7.91 -12.16 -0.10 9.23 16 6 O -0.50 -9.11 17.24 5.37 0.09 -9.02 16 7 N -0.60 -8.91 3.30 -170.79 -0.56 -9.48 16 8 C 0.09 1.16 6.74 -2.05 -0.01 1.15 16 9 C -0.12 -1.54 6.15 -25.05 -0.15 -1.69 16 10 C -0.09 -1.50 0.62 -154.04 -0.09 -1.59 16 11 C 0.13 2.12 5.62 -3.13 -0.02 2.10 16 12 C -0.09 -1.39 4.43 -26.92 -0.12 -1.51 16 13 C -0.14 -2.21 5.86 -26.61 -0.16 -2.37 16 14 C 0.14 2.77 6.50 -3.75 -0.02 2.75 16 15 N -0.59 -13.38 2.80 -172.60 -0.48 -13.87 16 16 C -0.25 -6.44 9.59 -15.06 -0.14 -6.58 16 17 H 0.07 1.68 7.89 -52.48 -0.41 1.26 16 18 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 19 N -0.90 -24.25 11.18 55.49 0.62 -23.63 16 20 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.19 3.84 3.61 -3.93 -0.01 3.83 16 25 C -0.24 -3.18 10.94 -38.69 -0.42 -3.61 16 26 C 0.48 6.58 8.02 -14.65 -0.12 6.46 16 27 O -0.53 -8.67 17.92 4.94 0.09 -8.58 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.82 5.55 -51.93 -0.29 0.53 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.09 1.08 7.79 -51.92 -0.40 0.67 16 35 H 0.09 1.83 7.63 -51.93 -0.40 1.44 16 36 H 0.08 1.32 6.34 -51.93 -0.33 0.99 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.01 6.58 -51.93 -0.34 0.67 16 41 H 0.05 1.03 7.93 -51.92 -0.41 0.62 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.09 2.11 6.03 -51.93 -0.31 1.80 16 45 H 0.02 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -31.27 367.42 -7.57 -38.84 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.67 Total: -0.43 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.05 Total: 9.90 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.68 Total: -52.15 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.32 Total: -17.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.27 -7.57 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040180035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.789 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds