Wall clock time and date at job start Tue Mar 31 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20926 * 124.56747 * 2 1 4 4 C 1.34160 * 112.19495 * 180.02562 * 3 2 1 5 5 C 1.48209 * 126.38375 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99929 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00345 * 0.02785 * 5 4 3 8 8 C 1.48159 * 127.02161 * 359.95284 * 7 5 4 9 9 C 1.55048 * 103.31127 * 141.01664 * 8 7 5 10 10 C 1.54151 * 102.73391 * 36.99451 * 9 8 7 11 11 C 1.47612 * 127.02736 * 180.02562 * 7 5 4 12 12 C 1.52498 * 110.05694 * 219.39060 * 10 9 8 13 13 C 1.53124 * 109.58496 * 178.26925 * 12 10 9 14 14 C 1.53120 * 109.32169 * 60.51981 * 13 12 10 15 15 N 1.46931 * 108.88193 * 304.91586 * 14 13 12 16 16 C 1.36940 * 120.68546 * 234.04723 * 15 14 13 17 17 H 1.08003 * 119.99853 * 27.35764 * 16 15 14 18 18 C 1.38813 * 120.00022 * 207.36904 * 16 15 14 19 19 N 1.31616 * 119.99859 * 17.23235 * 18 16 15 20 20 Si 1.86797 * 119.99926 * 197.23674 * 18 16 15 21 21 H 1.48501 * 109.47330 * 59.99496 * 20 18 16 22 22 H 1.48498 * 109.47087 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46661 * 299.99632 * 20 18 16 24 24 C 1.47036 * 118.63439 * 54.02340 * 15 14 13 25 25 C 1.36318 * 107.23293 * 0.26424 * 4 3 2 26 26 C 1.34834 * 124.57104 * 180.02562 * 2 1 3 27 27 O 1.21973 * 127.14579 * 359.96844 * 26 2 1 28 28 H 1.09000 * 109.47065 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46744 * 119.97803 * 1 2 3 30 30 H 1.09001 * 109.47011 * 239.97526 * 1 2 3 31 31 H 1.09006 * 110.65418 * 259.46967 * 8 7 5 32 32 H 1.08998 * 110.65496 * 22.39752 * 8 7 5 33 33 H 1.08998 * 110.76146 * 278.67971 * 9 8 7 34 34 H 1.09010 * 110.75539 * 155.30244 * 9 8 7 35 35 H 1.08994 * 109.97551 * 85.96341 * 11 7 5 36 36 H 1.08995 * 109.97157 * 324.68356 * 11 7 5 37 37 H 1.09005 * 109.44991 * 298.29966 * 12 10 9 38 38 H 1.09001 * 109.44851 * 58.23801 * 12 10 9 39 39 H 1.08997 * 109.50079 * 180.44270 * 13 12 10 40 40 H 1.09004 * 109.50010 * 300.54417 * 13 12 10 41 41 H 1.09007 * 109.57031 * 185.09664 * 14 13 12 42 42 H 1.08994 * 109.57794 * 64.73979 * 14 13 12 43 43 H 0.97002 * 119.99669 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.58343 * 187.41618 * 24 15 14 45 45 H 1.08994 * 109.58337 * 66.99760 * 24 15 14 46 46 H 1.07994 * 128.00111 * 179.73928 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4615 0.7083 -0.0006 5 6 4.5759 1.6854 -0.0013 6 8 5.7263 1.2947 -0.0022 7 7 4.3132 3.0073 -0.0008 8 6 2.9791 3.6517 -0.0006 9 6 3.1677 4.8627 0.9490 10 6 4.6025 5.3261 0.6278 11 6 5.2958 4.1089 -0.0019 12 6 5.3177 5.7397 1.9096 13 6 6.7546 6.1568 1.5839 14 6 6.7308 7.3452 0.6186 15 7 5.9357 6.9825 -0.5626 16 6 6.4596 7.1044 -1.8219 17 1 7.5267 7.0324 -1.9722 18 6 5.6191 7.3208 -2.9053 19 7 4.3880 7.7430 -2.7091 20 14 6.2353 7.0128 -4.6416 21 1 6.6384 5.5901 -4.7787 22 1 5.1529 7.3158 -5.6120 23 1 7.4044 7.8870 -4.9142 24 6 4.5662 6.4854 -0.3646 25 6 3.5770 -0.6499 -0.0069 26 6 2.2301 -1.1103 -0.0005 27 8 1.8474 -2.2684 -0.0005 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5135 -0.8902 30 1 -0.3633 -0.5142 0.8898 31 1 2.7140 3.9871 -1.0033 32 1 2.2227 2.9697 0.3878 33 1 3.0858 4.5532 1.9909 34 1 2.4477 5.6486 0.7205 35 1 5.5962 4.3388 -1.0241 36 1 6.1681 3.8302 0.5892 37 1 4.7907 6.5783 2.3649 38 1 5.3321 4.9000 2.6044 39 1 7.2669 6.4446 2.5019 40 1 7.2796 5.3216 1.1202 41 1 7.7486 7.5879 0.3131 42 1 6.2804 8.2069 1.1112 43 1 3.8006 7.8938 -3.4662 44 1 4.1620 6.1394 -1.3160 45 1 3.9407 7.2856 0.0311 46 1 4.4813 -1.2403 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040180035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:45 Heat of formation + Delta-G solvation = 25.766563 kcal Electronic energy + Delta-G solvation = -30432.741495 eV Core-core repulsion = 26327.405083 eV Total energy + Delta-G solvation = -4105.336412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.25770 -41.58669 -39.92623 -39.38553 -37.41977 -35.44316 -34.88088 -33.45295 -33.08002 -31.79005 -30.24146 -29.33834 -27.40923 -27.09604 -24.96521 -24.72402 -23.99073 -23.50166 -21.93173 -21.09285 -19.66906 -19.54035 -19.21777 -18.62902 -18.32080 -17.33308 -17.02551 -16.68417 -16.35729 -16.06784 -15.74105 -15.51970 -15.43179 -15.05939 -14.93659 -14.80082 -14.52876 -14.26119 -14.22109 -14.04757 -13.87620 -13.65646 -13.19185 -13.15608 -12.86759 -12.67497 -12.62539 -12.38084 -12.11583 -11.92168 -11.80959 -11.78240 -11.40926 -11.33920 -11.15094 -11.01290 -10.98791 -10.49598 -9.95633 -9.70107 -8.62046 -7.85382 -5.26946 -0.66456 0.46833 1.33425 1.45398 1.45980 1.48444 1.53498 1.77629 2.11212 2.51747 3.12466 3.29022 3.52156 3.58018 3.70171 3.82227 3.87433 3.92812 4.23162 4.26834 4.32073 4.33799 4.34712 4.48161 4.54956 4.60853 4.64926 4.66978 4.71596 4.76581 4.91604 4.95695 4.98893 5.07318 5.14838 5.19926 5.21485 5.34330 5.37397 5.52533 5.61229 5.69305 5.80620 6.15099 6.36429 6.42848 6.58887 6.81112 7.19906 7.91292 8.41527 9.20146 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003538 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.364860 B = 7912.991364 C = 8584.538076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.444 5.444 3 O 0.016 5.984 4 C 0.045 3.955 5 C 0.613 3.387 6 O -0.537 6.537 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.113 4.113 10 C -0.087 4.087 11 C 0.135 3.865 12 C -0.090 4.090 13 C -0.130 4.130 14 C 0.139 3.861 15 N -0.609 5.609 16 C -0.258 4.258 17 H 0.058 0.942 18 C -0.038 4.038 19 N -0.925 5.925 20 Si 0.949 3.051 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.199 3.801 25 C -0.244 4.244 26 C 0.472 3.528 27 O -0.562 6.562 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.018 0.982 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.006 0.994 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -9.184 10.319 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.205 5.205 3 O 0.004 5.996 4 C -0.014 4.014 5 C 0.399 3.601 6 O -0.415 6.415 7 N -0.331 5.331 8 C -0.026 4.026 9 C -0.151 4.151 10 C -0.090 4.090 11 C 0.014 3.986 12 C -0.128 4.128 13 C -0.169 4.169 14 C 0.014 3.986 15 N -0.332 5.332 16 C -0.388 4.388 17 H 0.076 0.924 18 C -0.234 4.234 19 N -0.571 5.571 20 Si 0.778 3.222 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.073 3.927 25 C -0.269 4.269 26 C 0.271 3.729 27 O -0.446 6.446 28 H 0.149 0.851 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.024 0.976 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.626 -9.791 10.182 17.094 hybrid contribution 0.648 0.118 -1.488 1.627 sum -8.978 -9.672 8.695 15.804 Atomic orbital electron populations 1.22627 0.67798 1.07698 1.05815 1.46472 1.07199 0.99175 1.67673 1.84153 1.14659 1.20580 1.80197 1.22936 0.81800 0.95409 1.01225 1.16398 0.85435 0.80200 0.78106 1.90871 1.19833 1.78405 1.52423 1.48949 1.11385 1.03837 1.68902 1.23001 0.83076 0.95150 1.01341 1.22724 0.95354 0.96893 1.00137 1.21697 0.95733 0.94519 0.97033 1.22042 0.91344 0.84416 1.00831 1.21373 0.95253 1.01147 0.94980 1.21975 0.97232 0.98488 0.99207 1.21047 0.94737 0.94867 0.87973 1.44315 1.13111 1.74445 1.01346 1.19361 0.92260 1.42410 0.84791 0.92388 1.25499 0.97174 1.00042 1.00694 1.70116 1.07857 1.48945 1.30223 0.85628 0.77279 0.77902 0.81374 1.21288 1.21792 1.20519 1.20578 0.84997 0.90977 0.96138 1.23436 1.00048 0.93373 1.10038 1.18348 0.87053 0.85580 0.81915 1.90935 1.79660 1.17214 1.56832 0.85141 0.88376 0.87909 0.90469 0.87125 0.88466 0.88713 0.93158 0.91000 0.91157 0.90964 0.90091 0.93234 0.93590 0.96425 0.94090 0.92313 0.97610 0.78561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.18 127.77 1.43 2.29 16 2 N -0.44 -8.38 3.68 -492.73 -1.82 -10.19 16 3 O 0.02 0.30 8.06 70.49 0.57 0.87 16 4 C 0.05 1.10 7.07 24.47 0.17 1.27 16 5 C 0.61 18.10 7.91 86.89 0.69 18.79 16 6 O -0.54 -19.37 17.24 -3.70 -0.06 -19.44 16 7 N -0.60 -17.05 3.30 -812.57 -2.68 -19.73 16 8 C 0.10 2.12 6.74 86.76 0.59 2.71 16 9 C -0.11 -2.51 6.15 31.69 0.19 -2.32 16 10 C -0.09 -2.67 0.62 -51.88 -0.03 -2.70 16 11 C 0.14 4.54 5.62 86.36 0.49 5.03 16 12 C -0.09 -2.41 4.43 30.47 0.14 -2.27 16 13 C -0.13 -3.90 5.86 30.68 0.18 -3.72 16 14 C 0.14 5.33 6.50 86.34 0.56 5.89 16 15 N -0.61 -28.07 2.80 -699.97 -1.96 -30.03 16 16 C -0.26 -13.52 9.59 84.03 0.81 -12.71 16 17 H 0.06 3.06 7.89 -2.91 -0.02 3.03 16 18 C -0.04 -2.02 4.92 84.86 0.42 -1.60 16 19 N -0.93 -50.92 11.18 21.65 0.24 -50.68 16 20 Si 0.95 43.75 29.59 68.60 2.03 45.78 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 C 0.20 8.25 3.61 86.16 0.31 8.56 16 25 C -0.24 -6.07 10.94 22.84 0.25 -5.82 16 26 C 0.47 12.20 8.02 85.25 0.68 12.89 16 27 O -0.56 -18.11 17.92 -5.23 -0.09 -18.20 16 28 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.11 1.80 5.55 -2.39 -0.01 1.79 16 33 H 0.10 1.71 7.84 -2.39 -0.02 1.69 16 34 H 0.09 2.05 7.79 -2.38 -0.02 2.04 16 35 H 0.05 2.11 7.63 -2.39 -0.02 2.09 16 36 H 0.07 2.47 6.34 -2.39 -0.02 2.46 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.60 6.58 -2.38 -0.02 1.59 16 41 H 0.05 1.78 7.93 -2.38 -0.02 1.76 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 44 H 0.06 2.82 6.03 -2.38 -0.01 2.80 16 45 H 0.01 0.26 8.09 -2.39 -0.02 0.24 16 46 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -70.09 367.42 4.09 -66.00 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.00 Total: 9.34 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 6.87 Total: 26.27 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -6.21 Total: -110.63 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: 0.41 Total: -36.77 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.09 4.09 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040180035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.768 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds