Wall clock time and date at job start Tue Mar 31 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20921 * 124.57315 * 2 1 4 4 C 1.34160 * 112.19513 * 180.15426 * 3 2 1 5 5 C 1.48206 * 126.38611 * 179.78503 * 4 3 2 6 6 O 1.21493 * 120.00303 * 179.69146 * 5 4 3 7 7 N 1.34782 * 120.00010 * 359.68475 * 5 4 3 8 8 C 1.47358 * 125.77437 * 0.02562 * 7 5 4 9 9 C 1.54461 * 107.33238 * 178.98624 * 8 7 5 10 10 C 1.54368 * 102.87545 * 338.50782 * 9 8 7 11 11 C 1.47567 * 125.62939 * 180.02562 * 7 5 4 12 12 C 1.52105 * 110.56939 * 152.59989 * 10 9 8 13 13 C 1.53341 * 109.44398 * 182.79383 * 12 10 9 14 14 N 1.46926 * 108.68996 * 306.70938 * 13 12 10 15 15 C 1.36939 * 120.54802 * 234.32188 * 14 13 12 16 16 H 1.07996 * 120.00268 * 152.04322 * 15 14 13 17 17 C 1.38820 * 119.99860 * 332.03771 * 15 14 13 18 18 N 1.31619 * 119.99963 * 342.46915 * 17 15 14 19 19 Si 1.86795 * 119.99820 * 162.46696 * 17 15 14 20 20 H 1.48497 * 109.47223 * 94.33179 * 19 17 15 21 21 H 1.48498 * 109.47280 * 214.33530 * 19 17 15 22 22 H 1.48507 * 109.47459 * 334.33421 * 19 17 15 23 23 C 1.46929 * 118.90082 * 54.34156 * 14 13 12 24 24 C 1.52109 * 110.54992 * 276.69825 * 10 9 8 25 25 C 1.36310 * 107.23064 * 359.51799 * 4 3 2 26 26 C 1.34832 * 124.56479 * 179.61854 * 2 1 3 27 27 O 1.21982 * 127.15018 * 0.06058 * 26 2 1 28 28 H 1.09002 * 109.47537 * 270.38001 * 1 2 3 29 29 H 1.09002 * 109.46829 * 30.38206 * 1 2 3 30 30 H 1.08998 * 109.47330 * 150.37237 * 1 2 3 31 31 H 1.08993 * 109.85104 * 59.55205 * 8 7 5 32 32 H 1.09007 * 109.98969 * 298.49763 * 8 7 5 33 33 H 1.08997 * 110.72992 * 220.15905 * 9 8 7 34 34 H 1.09004 * 110.88336 * 96.92751 * 9 8 7 35 35 H 1.08999 * 110.37544 * 84.47523 * 11 7 5 36 36 H 1.08996 * 110.37552 * 322.23151 * 11 7 5 37 37 H 1.08994 * 109.47260 * 302.79220 * 12 10 9 38 38 H 1.09004 * 109.46876 * 62.80462 * 12 10 9 39 39 H 1.08996 * 109.59838 * 186.94003 * 13 12 10 40 40 H 1.09008 * 109.59626 * 66.46667 * 13 12 10 41 41 H 0.97000 * 119.99599 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.60561 * 185.89431 * 23 14 13 43 43 H 1.09000 * 109.73552 * 65.48866 * 23 14 13 44 44 H 1.09005 * 109.47251 * 297.17516 * 24 10 9 45 45 H 1.09001 * 109.47957 * 57.18575 * 24 10 9 46 46 H 1.08002 * 127.99652 * 180.28262 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0033 5 6 4.5761 1.6850 -0.0088 6 8 5.7264 1.2943 -0.0058 7 7 4.3134 3.0070 -0.0173 8 6 2.9729 3.6189 -0.0214 9 6 3.1666 5.1512 -0.0050 10 6 4.5947 5.3115 0.5587 11 6 5.3224 4.0838 -0.0239 12 6 5.2271 6.5994 0.0538 13 6 6.6670 6.6983 0.5718 14 7 6.6542 6.5356 2.0320 15 6 7.2294 7.4778 2.8423 16 1 6.8616 7.6227 3.8473 17 6 8.2853 8.2465 2.3720 18 7 8.9583 7.8600 1.3090 19 14 8.7507 9.8294 3.2477 20 1 9.8331 9.5539 4.2264 21 1 9.2246 10.8247 2.2527 22 1 7.5645 10.3683 3.9604 23 6 6.0146 5.3450 2.6082 24 6 4.5784 5.2540 2.0786 25 6 3.5769 -0.6501 0.0053 26 6 2.2299 -1.1103 0.0074 27 8 1.8472 -2.2685 0.0141 28 1 -0.3634 0.0068 1.0276 29 1 -0.3633 0.8866 -0.5198 30 1 -0.3634 -0.8933 -0.5080 31 1 2.4203 3.3057 0.8643 32 1 2.4311 3.3233 -0.9199 33 1 2.4371 5.6253 0.6516 34 1 3.1010 5.5620 -1.0126 35 1 5.6538 4.2870 -1.0422 36 1 6.1711 3.8125 0.6037 37 1 5.2321 6.5988 -1.0361 38 1 4.6518 7.4522 0.4142 39 1 7.0814 7.6734 0.3160 40 1 7.2724 5.9116 0.1215 41 1 9.6959 8.3974 0.9802 42 1 5.9989 5.4280 3.6949 43 1 6.5687 4.4524 2.3176 44 1 3.9941 6.0880 2.4675 45 1 4.1304 4.3144 2.4020 46 1 4.4812 -1.2406 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040681529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:51 Heat of formation + Delta-G solvation = 43.812324 kcal Electronic energy + Delta-G solvation = -30020.910684 eV Core-core repulsion = 25916.356795 eV Total energy + Delta-G solvation = -4104.553889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.37824 -40.59841 -38.72081 -38.41213 -36.05878 -34.62621 -33.22511 -32.50378 -31.31023 -30.17842 -29.40523 -28.65410 -26.77436 -25.09925 -23.86405 -23.50339 -22.55377 -22.28529 -20.81722 -20.03584 -18.70364 -18.42784 -18.30754 -17.41411 -16.58722 -16.35735 -15.97903 -15.46137 -15.07045 -14.85531 -14.51098 -14.19702 -14.07352 -13.95557 -13.83870 -13.72182 -13.38211 -13.33121 -13.27294 -13.02322 -12.78403 -12.50925 -12.06237 -11.80845 -11.50911 -11.25012 -10.97599 -10.73873 -10.73062 -10.52789 -10.38568 -10.29232 -10.27582 -10.24427 -9.89265 -9.61691 -9.46237 -8.90886 -8.77209 -8.48829 -6.69646 -5.82020 -3.24051 0.28876 1.27487 2.32034 2.43638 2.78370 3.03723 3.35076 3.42837 3.44563 4.06887 4.36170 4.47000 4.49806 4.62544 4.67065 4.72244 4.79200 4.84944 4.97318 5.17503 5.23031 5.35436 5.38119 5.52354 5.56378 5.57032 5.63693 5.77384 5.84499 5.88780 5.99112 6.04075 6.05344 6.23995 6.41308 6.53065 6.56218 6.64016 6.76617 6.91935 7.11752 7.28828 7.29651 7.58689 7.61723 7.72283 7.77089 8.42022 9.18299 9.81622 10.37770 11.26370 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.002614 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.442961 B =10709.569753 C =11028.549507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.455 5.455 3 O -0.001 6.001 4 C 0.042 3.958 5 C 0.609 3.391 6 O -0.494 6.494 7 N -0.599 5.599 8 C 0.099 3.901 9 C -0.125 4.125 10 C -0.055 4.055 11 C 0.114 3.886 12 C -0.126 4.126 13 C 0.169 3.831 14 N -0.590 5.590 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.143 3.857 24 C -0.118 4.118 25 C -0.241 4.241 26 C 0.482 3.518 27 O -0.525 6.525 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 -9.447 -5.391 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.219 5.219 3 O -0.013 6.013 4 C -0.016 4.016 5 C 0.393 3.607 6 O -0.369 6.369 7 N -0.331 5.331 8 C -0.024 4.024 9 C -0.163 4.163 10 C -0.056 4.056 11 C -0.006 4.006 12 C -0.165 4.165 13 C 0.043 3.957 14 N -0.313 5.313 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.157 4.157 25 C -0.266 4.266 26 C 0.280 3.720 27 O -0.406 6.406 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.162 -10.056 -5.455 21.465 hybrid contribution 0.240 0.779 0.392 0.904 sum -17.922 -9.277 -5.063 20.806 Atomic orbital electron populations 1.22128 0.70693 1.05611 1.04490 1.46079 1.05902 1.00009 1.69921 1.84094 1.15314 1.20799 1.81064 1.23471 0.81506 0.96255 1.00372 1.16269 0.85372 0.80186 0.78862 1.90927 1.18160 1.77714 1.50102 1.48589 1.09922 1.04375 1.70210 1.22265 0.83580 0.94665 1.01892 1.22738 0.98350 0.92870 1.02313 1.21034 0.93087 0.95033 0.96490 1.22581 0.91501 0.84595 1.01925 1.22057 1.01081 0.94724 0.98681 1.20841 0.89561 1.02119 0.83215 1.44037 1.65253 1.20162 1.01838 1.19169 1.10200 1.11597 0.97303 0.91752 1.25033 0.95659 1.00406 0.98488 1.70031 1.20857 1.37654 1.26020 0.86316 0.78259 0.83604 0.78796 1.21477 1.21567 1.20472 1.20956 0.90326 0.90228 0.96819 1.21843 1.00356 1.00277 0.93201 1.23327 0.99712 0.93315 1.10266 1.18340 0.86697 0.85513 0.81458 1.90967 1.79070 1.15880 1.54635 0.90075 0.88828 0.87682 0.90970 0.91144 0.89789 0.90383 0.90713 0.88750 0.92868 0.91895 0.89262 0.96241 0.93614 0.92757 0.96309 0.91798 0.93257 0.78937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.54 11.22 59.85 0.67 1.21 16 2 N -0.46 -4.31 3.68 -69.77 -0.26 -4.57 16 3 O 0.00 -0.01 8.66 16.86 0.15 0.13 16 4 C 0.04 0.49 7.06 -36.18 -0.26 0.23 16 5 C 0.61 8.32 7.87 -12.16 -0.10 8.22 16 6 O -0.49 -8.38 17.16 5.37 0.09 -8.29 16 7 N -0.60 -7.53 3.33 -171.51 -0.57 -8.10 16 8 C 0.10 0.93 5.23 -2.81 -0.01 0.92 16 9 C -0.12 -1.26 5.89 -25.25 -0.15 -1.41 16 10 C -0.06 -0.77 0.54 -154.10 -0.08 -0.86 16 11 C 0.11 1.67 4.87 -2.86 -0.01 1.66 16 12 C -0.13 -2.06 4.83 -27.01 -0.13 -2.19 16 13 C 0.17 3.69 5.06 -3.63 -0.02 3.67 16 14 N -0.59 -13.93 2.98 -172.13 -0.51 -14.44 16 15 C -0.25 -6.69 9.57 -15.06 -0.14 -6.84 16 16 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 18 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 19 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.14 2.84 6.20 -3.63 -0.02 2.81 16 24 C -0.12 -1.81 4.83 -27.01 -0.13 -1.94 16 25 C -0.24 -2.86 10.94 -38.70 -0.42 -3.29 16 26 C 0.48 6.02 8.02 -14.66 -0.12 5.90 16 27 O -0.52 -8.12 17.84 4.94 0.09 -8.03 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.49 8.03 -51.93 -0.42 0.08 16 31 H 0.07 0.63 7.72 -51.93 -0.40 0.22 16 32 H 0.07 0.56 7.83 -51.92 -0.41 0.15 16 33 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 34 H 0.08 0.72 7.99 -51.93 -0.42 0.30 16 35 H 0.07 1.07 7.97 -51.93 -0.41 0.66 16 36 H 0.09 1.65 6.10 -51.93 -0.32 1.34 16 37 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 40 H 0.02 0.45 7.63 -51.92 -0.40 0.06 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.02 0.39 6.58 -51.93 -0.34 0.05 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.69 7.84 -51.93 -0.41 0.28 16 46 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -32.74 367.37 -7.64 -40.38 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.74 Total: -1.99 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.01 Total: 8.10 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.72 Total: -51.93 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.33 Total: -16.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -7.64 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040681529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.187 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds