Wall clock time and date at job start Tue Mar 31 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20921 * 124.57315 * 2 1 4 4 C 1.34160 * 112.19513 * 180.15426 * 3 2 1 5 5 C 1.48206 * 126.38611 * 179.78503 * 4 3 2 6 6 O 1.21493 * 120.00303 * 179.69146 * 5 4 3 7 7 N 1.34782 * 120.00010 * 359.68475 * 5 4 3 8 8 C 1.47358 * 125.77437 * 0.02562 * 7 5 4 9 9 C 1.54461 * 107.33238 * 178.98624 * 8 7 5 10 10 C 1.54368 * 102.87545 * 338.50782 * 9 8 7 11 11 C 1.47567 * 125.62939 * 180.02562 * 7 5 4 12 12 C 1.52105 * 110.56939 * 152.59989 * 10 9 8 13 13 C 1.53341 * 109.44398 * 182.79383 * 12 10 9 14 14 N 1.46926 * 108.68996 * 306.70938 * 13 12 10 15 15 C 1.36939 * 120.54802 * 234.32188 * 14 13 12 16 16 H 1.07996 * 120.00268 * 152.04322 * 15 14 13 17 17 C 1.38820 * 119.99860 * 332.03771 * 15 14 13 18 18 N 1.31619 * 119.99963 * 342.46915 * 17 15 14 19 19 Si 1.86795 * 119.99820 * 162.46696 * 17 15 14 20 20 H 1.48497 * 109.47223 * 94.33179 * 19 17 15 21 21 H 1.48498 * 109.47280 * 214.33530 * 19 17 15 22 22 H 1.48507 * 109.47459 * 334.33421 * 19 17 15 23 23 C 1.46929 * 118.90082 * 54.34156 * 14 13 12 24 24 C 1.52109 * 110.54992 * 276.69825 * 10 9 8 25 25 C 1.36310 * 107.23064 * 359.51799 * 4 3 2 26 26 C 1.34832 * 124.56479 * 179.61854 * 2 1 3 27 27 O 1.21982 * 127.15018 * 0.06058 * 26 2 1 28 28 H 1.09002 * 109.47537 * 270.38001 * 1 2 3 29 29 H 1.09002 * 109.46829 * 30.38206 * 1 2 3 30 30 H 1.08998 * 109.47330 * 150.37237 * 1 2 3 31 31 H 1.08993 * 109.85104 * 59.55205 * 8 7 5 32 32 H 1.09007 * 109.98969 * 298.49763 * 8 7 5 33 33 H 1.08997 * 110.72992 * 220.15905 * 9 8 7 34 34 H 1.09004 * 110.88336 * 96.92751 * 9 8 7 35 35 H 1.08999 * 110.37544 * 84.47523 * 11 7 5 36 36 H 1.08996 * 110.37552 * 322.23151 * 11 7 5 37 37 H 1.08994 * 109.47260 * 302.79220 * 12 10 9 38 38 H 1.09004 * 109.46876 * 62.80462 * 12 10 9 39 39 H 1.08996 * 109.59838 * 186.94003 * 13 12 10 40 40 H 1.09008 * 109.59626 * 66.46667 * 13 12 10 41 41 H 0.97000 * 119.99599 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.60561 * 185.89431 * 23 14 13 43 43 H 1.09000 * 109.73552 * 65.48866 * 23 14 13 44 44 H 1.09005 * 109.47251 * 297.17516 * 24 10 9 45 45 H 1.09001 * 109.47957 * 57.18575 * 24 10 9 46 46 H 1.08002 * 127.99652 * 180.28262 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0033 5 6 4.5761 1.6850 -0.0088 6 8 5.7264 1.2943 -0.0058 7 7 4.3134 3.0070 -0.0173 8 6 2.9729 3.6189 -0.0214 9 6 3.1666 5.1512 -0.0050 10 6 4.5947 5.3115 0.5587 11 6 5.3224 4.0838 -0.0239 12 6 5.2271 6.5994 0.0538 13 6 6.6670 6.6983 0.5718 14 7 6.6542 6.5356 2.0320 15 6 7.2294 7.4778 2.8423 16 1 6.8616 7.6227 3.8473 17 6 8.2853 8.2465 2.3720 18 7 8.9583 7.8600 1.3090 19 14 8.7507 9.8294 3.2477 20 1 9.8331 9.5539 4.2264 21 1 9.2246 10.8247 2.2527 22 1 7.5645 10.3683 3.9604 23 6 6.0146 5.3450 2.6082 24 6 4.5784 5.2540 2.0786 25 6 3.5769 -0.6501 0.0053 26 6 2.2299 -1.1103 0.0074 27 8 1.8472 -2.2685 0.0141 28 1 -0.3634 0.0068 1.0276 29 1 -0.3633 0.8866 -0.5198 30 1 -0.3634 -0.8933 -0.5080 31 1 2.4203 3.3057 0.8643 32 1 2.4311 3.3233 -0.9199 33 1 2.4371 5.6253 0.6516 34 1 3.1010 5.5620 -1.0126 35 1 5.6538 4.2870 -1.0422 36 1 6.1711 3.8125 0.6037 37 1 5.2321 6.5988 -1.0361 38 1 4.6518 7.4522 0.4142 39 1 7.0814 7.6734 0.3160 40 1 7.2724 5.9116 0.1215 41 1 9.6959 8.3974 0.9802 42 1 5.9989 5.4280 3.6949 43 1 6.5687 4.4524 2.3176 44 1 3.9941 6.0880 2.4675 45 1 4.1304 4.3144 2.4020 46 1 4.4812 -1.2406 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040681529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:49 Heat of formation + Delta-G solvation = 22.471008 kcal Electronic energy + Delta-G solvation = -30021.836113 eV Core-core repulsion = 25916.356795 eV Total energy + Delta-G solvation = -4105.479318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.24729 -41.70502 -39.94473 -39.37928 -37.51514 -35.45757 -34.73571 -33.42157 -32.90920 -31.62519 -30.62451 -29.54038 -27.95865 -26.55639 -24.88892 -24.65400 -23.86574 -23.48234 -22.23582 -21.00347 -19.76332 -19.53106 -19.27184 -18.54722 -18.13115 -17.40495 -17.01102 -16.81821 -16.33621 -16.08057 -15.69263 -15.54966 -15.37131 -15.03718 -14.88240 -14.84914 -14.62976 -14.39787 -14.21297 -14.06053 -13.75696 -13.63075 -13.32950 -13.14590 -13.00837 -12.74527 -12.54825 -12.41630 -12.00524 -11.95421 -11.82825 -11.81358 -11.44155 -11.34914 -11.13849 -11.06451 -10.99384 -10.49175 -9.88571 -9.67317 -8.63378 -7.85200 -5.29974 -0.65439 0.48570 1.34139 1.46004 1.47185 1.48935 1.58618 1.78472 2.11124 2.52939 3.14496 3.29042 3.52424 3.57483 3.67245 3.73943 3.83487 3.86264 4.25237 4.28425 4.29029 4.36921 4.39178 4.50614 4.59571 4.63366 4.68459 4.69261 4.72422 4.77790 4.81018 4.89534 4.95087 5.04593 5.10341 5.11858 5.26451 5.34450 5.40717 5.42967 5.57174 5.68159 5.83703 6.12947 6.37857 6.41893 6.60789 6.81689 7.18204 7.90123 8.40497 9.20451 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.002614 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.442961 B =10709.569753 C =11028.549507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.443 5.443 3 O 0.023 5.977 4 C 0.048 3.952 5 C 0.610 3.390 6 O -0.539 6.539 7 N -0.594 5.594 8 C 0.094 3.906 9 C -0.110 4.110 10 C -0.054 4.054 11 C 0.118 3.882 12 C -0.111 4.111 13 C 0.174 3.826 14 N -0.608 5.608 15 C -0.261 4.261 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.268 1.268 23 C 0.138 3.862 24 C -0.103 4.103 25 C -0.250 4.250 26 C 0.471 3.529 27 O -0.564 6.564 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.052 0.948 40 H -0.008 1.008 41 H 0.249 0.751 42 H 0.047 0.953 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.345 -8.681 -5.620 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.203 5.203 3 O 0.011 5.989 4 C -0.011 4.011 5 C 0.395 3.605 6 O -0.417 6.417 7 N -0.325 5.325 8 C -0.027 4.027 9 C -0.147 4.147 10 C -0.055 4.055 11 C -0.003 4.003 12 C -0.150 4.150 13 C 0.048 3.952 14 N -0.331 5.331 15 C -0.391 4.391 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.192 1.192 23 C 0.013 3.987 24 C -0.142 4.142 25 C -0.275 4.275 26 C 0.270 3.730 27 O -0.449 6.449 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.010 0.990 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.177 -9.265 -5.676 24.696 hybrid contribution 1.457 0.537 0.493 1.629 sum -20.721 -8.728 -5.183 23.074 Atomic orbital electron populations 1.22633 0.67659 1.07431 1.06281 1.46401 1.07162 0.99120 1.67615 1.84103 1.14383 1.20453 1.79995 1.22883 0.81901 0.95260 1.01052 1.16385 0.85242 0.80598 0.78242 1.90908 1.20126 1.78533 1.52112 1.48614 1.10951 1.03684 1.69256 1.22575 0.81888 0.94055 1.04191 1.22703 0.95074 0.93448 1.03524 1.20930 0.96015 0.93099 0.95492 1.22358 0.91145 0.85645 1.01199 1.21830 0.96916 0.96306 0.99943 1.20665 0.92941 0.98988 0.82605 1.44313 1.65467 1.20973 1.02379 1.19501 1.09938 1.12011 0.97647 0.91768 1.25763 0.95986 1.03344 0.99517 1.70194 1.21490 1.38721 1.27693 0.85316 0.77975 0.79953 0.77517 1.21757 1.21831 1.19238 1.21085 0.92932 0.88164 0.96538 1.21665 0.96714 1.01616 0.94161 1.23420 1.00004 0.93704 1.10357 1.18363 0.87075 0.85653 0.81909 1.90942 1.79647 1.17334 1.56970 0.88314 0.85431 0.87491 0.89166 0.88353 0.87531 0.88574 0.90634 0.92637 0.90542 0.91573 0.92927 0.98963 0.94189 0.93432 0.98024 0.91075 0.91120 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.22 127.77 1.43 2.00 16 2 N -0.44 -6.99 3.68 -492.73 -1.82 -8.80 16 3 O 0.02 0.35 8.66 70.49 0.61 0.96 16 4 C 0.05 1.02 7.06 24.47 0.17 1.19 16 5 C 0.61 16.01 7.87 86.89 0.68 16.69 16 6 O -0.54 -18.72 17.16 -3.69 -0.06 -18.78 16 7 N -0.59 -13.56 3.33 -814.82 -2.71 -16.27 16 8 C 0.09 1.30 5.23 86.71 0.45 1.75 16 9 C -0.11 -1.63 5.89 31.56 0.19 -1.44 16 10 C -0.05 -1.38 0.54 -51.92 -0.03 -1.41 16 11 C 0.12 3.35 4.87 86.56 0.42 3.77 16 12 C -0.11 -3.45 4.83 30.41 0.15 -3.30 16 13 C 0.17 7.84 5.06 86.41 0.44 8.28 16 14 N -0.61 -29.41 2.98 -698.49 -2.08 -31.49 16 15 C -0.26 -14.07 9.57 84.04 0.80 -13.27 16 16 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 17 C -0.05 -2.80 4.90 84.86 0.42 -2.39 16 18 N -0.93 -54.91 11.20 21.65 0.24 -54.67 16 19 Si 0.96 44.28 29.59 68.60 2.03 46.30 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 C 0.14 5.55 6.20 86.41 0.54 6.09 16 24 C -0.10 -2.94 4.83 30.42 0.15 -2.79 16 25 C -0.25 -5.77 10.94 22.84 0.25 -5.52 16 26 C 0.47 11.19 8.02 85.25 0.68 11.87 16 27 O -0.56 -17.28 17.84 -5.26 -0.09 -17.38 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.11 0.69 8.03 -2.39 -0.02 0.67 16 31 H 0.09 1.01 7.72 -2.39 -0.02 0.99 16 32 H 0.10 0.93 7.83 -2.38 -0.02 0.91 16 33 H 0.11 1.22 8.01 -2.39 -0.02 1.21 16 34 H 0.10 1.18 7.99 -2.38 -0.02 1.16 16 35 H 0.08 2.12 7.97 -2.39 -0.02 2.10 16 36 H 0.06 2.03 6.10 -2.39 -0.01 2.01 16 37 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.75 6.02 -2.39 -0.01 2.73 16 40 H -0.01 -0.38 7.63 -2.38 -0.02 -0.40 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 43 H 0.00 0.08 6.58 -2.39 -0.02 0.07 16 44 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.07 1.74 7.84 -2.39 -0.02 1.73 16 46 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -76.32 367.37 3.85 -72.47 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.99 Total: 6.13 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.74 Total: 21.53 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -6.37 Total: -111.24 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: 0.45 Total: -35.19 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -76.32 3.85 -72.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040681529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.939 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds