Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99831 * 2 1 4 4 O 1.21277 * 119.99747 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.99775 * 359.97438 * 3 2 1 6 6 H 1.09003 * 110.87868 * 62.39453 * 5 3 2 7 7 C 1.55141 * 110.99737 * 298.54576 * 5 3 2 8 8 C 1.54309 * 103.02260 * 206.22246 * 7 5 3 9 9 N 1.47437 * 107.23739 * 22.28099 * 8 7 5 10 10 C 1.46899 * 111.00221 * 123.25934 * 9 8 7 11 11 C 1.52997 * 109.47254 * 69.87589 * 10 9 8 12 12 F 1.39905 * 109.47157 * 59.99979 * 11 10 9 13 13 F 1.39900 * 109.47010 * 300.00370 * 11 10 9 14 14 F 1.39897 * 109.47422 * 180.02562 * 11 10 9 15 15 C 1.47845 * 108.56728 * 0.99088 * 9 8 7 16 16 C 1.46504 * 120.00279 * 179.97438 * 2 1 3 17 17 C 1.53943 * 113.73863 * 38.74349 * 16 2 1 18 18 N 1.47814 * 86.03509 * 222.08747 * 17 16 2 19 19 C 1.36938 * 134.45724 * 204.64743 * 18 17 16 20 20 H 1.07998 * 120.00223 * 179.85834 * 19 18 17 21 21 C 1.38814 * 119.99786 * 359.86357 * 19 18 17 22 22 N 1.31621 * 119.99974 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99942 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46848 * 59.99972 * 23 21 19 25 25 H 1.48496 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46999 * 300.00025 * 23 21 19 27 27 C 1.47583 * 91.05365 * 24.54814 * 18 17 16 28 28 H 1.09003 * 109.47057 * 90.00004 * 1 2 3 29 29 H 1.09002 * 109.47155 * 209.99839 * 1 2 3 30 30 H 1.08999 * 109.47381 * 329.99838 * 1 2 3 31 31 H 1.08995 * 110.70214 * 87.83033 * 7 5 3 32 32 H 1.09004 * 110.85015 * 324.67309 * 7 5 3 33 33 H 1.09005 * 109.88721 * 262.87564 * 8 7 5 34 34 H 1.09000 * 109.89208 * 141.68769 * 8 7 5 35 35 H 1.09002 * 109.47043 * 309.87518 * 10 9 8 36 36 H 1.09001 * 109.46901 * 189.87739 * 10 9 8 37 37 H 1.08999 * 110.37756 * 94.73374 * 15 9 8 38 38 H 1.08997 * 110.37801 * 217.07712 * 15 9 8 39 39 H 1.08992 * 112.94248 * 170.33504 * 16 2 1 40 40 H 1.09000 * 113.76909 * 336.34232 * 17 16 2 41 41 H 1.08994 * 113.77059 * 107.74781 * 17 16 2 42 42 H 0.96996 * 119.99318 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.77012 * 221.15843 * 27 18 17 44 44 H 1.08999 * 113.76657 * 89.75163 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7820 2.5729 0.9017 7 6 0.5085 2.6073 -1.2733 8 6 0.3876 4.1352 -1.4517 9 7 1.5253 4.7493 -0.7429 10 6 2.3192 5.5892 -1.6497 11 6 1.5158 6.8363 -2.0242 12 9 1.2106 7.5595 -0.8661 13 9 0.3304 6.4536 -2.6609 14 9 2.2716 7.6359 -2.8882 15 6 2.3523 3.6723 -0.1581 16 6 2.1976 -1.2687 0.0006 17 6 1.5557 -2.3554 -0.8809 18 7 1.8611 -3.2878 0.2247 19 6 2.0639 -4.6393 0.3112 20 1 2.2810 -5.0927 1.2670 21 6 1.9907 -5.4265 -0.8299 22 7 1.7257 -4.8739 -1.9947 23 14 2.2681 -7.2701 -0.7121 24 1 1.2585 -7.8652 0.1998 25 1 2.1356 -7.8777 -2.0606 26 1 3.6300 -7.5328 -0.1818 27 6 1.8621 -2.1775 1.1970 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 -0.4723 2.1589 -1.1148 32 1 1.0022 2.1566 -2.1342 33 1 -0.5504 4.4858 -1.0211 34 1 0.4297 4.3894 -2.5109 35 1 2.5570 5.0257 -2.5520 36 1 3.2428 5.8873 -1.1535 37 1 3.1705 3.4145 -0.8305 38 1 2.7404 3.9770 0.8137 39 1 3.2669 -1.1420 -0.1680 40 1 0.4888 -2.2099 -1.0506 41 1 2.1092 -2.5618 -1.7968 42 1 1.6749 -5.4240 -2.7920 43 1 2.6600 -2.2422 1.9368 44 1 0.8855 -1.9796 1.6388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043655853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = -114.049689 kcal Electronic energy + Delta-G solvation = -29670.493724 eV Core-core repulsion = 25017.237684 eV Total energy + Delta-G solvation = -4653.256040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.36774 -47.93286 -47.79028 -40.51236 -38.84450 -37.46290 -34.67930 -33.16378 -31.94128 -29.43817 -28.71133 -27.56796 -26.73553 -24.87989 -24.05765 -23.41265 -22.05254 -21.40963 -19.60592 -18.83974 -18.76091 -18.54407 -17.64870 -17.26789 -16.84872 -16.27519 -16.18259 -15.36332 -14.98948 -14.84228 -14.72223 -14.50729 -14.27657 -14.08961 -13.98850 -13.91068 -13.87724 -13.73279 -13.57249 -13.38855 -12.88518 -12.53066 -12.31971 -12.15698 -11.88036 -11.84305 -11.63715 -11.50162 -11.37898 -11.35051 -11.05766 -10.91960 -10.75247 -10.31518 -10.13232 -9.61778 -9.51938 -8.96211 -8.85668 -8.22335 -6.97223 -5.83976 -3.16997 2.38044 2.72420 3.01955 3.31260 3.37162 3.41005 3.41971 3.50561 3.71417 4.02635 4.23703 4.31020 4.42006 4.53025 4.71394 4.83545 4.89001 4.96909 5.10750 5.14306 5.25785 5.31080 5.39310 5.44709 5.50939 5.57878 5.65490 5.73951 5.82551 5.83535 6.02902 6.10227 6.30730 6.33720 6.37518 6.51709 6.70398 7.12567 7.26385 7.45212 7.67830 7.89855 8.33655 8.97046 9.63258 10.49564 11.33198 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.002116 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.113628 B =13231.978521 C =13387.168813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.595 5.595 3 C 0.520 3.480 4 O -0.546 6.546 5 C -0.117 4.117 6 H 0.112 0.888 7 C -0.134 4.134 8 C 0.030 3.970 9 N -0.525 5.525 10 C 0.003 3.997 11 C 0.458 3.542 12 F -0.174 7.174 13 F -0.183 7.183 14 F -0.185 7.185 15 C 0.066 3.934 16 C 0.090 3.910 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.108 3.892 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 23.432 0.505 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.327 5.327 3 C 0.307 3.693 4 O -0.423 6.423 5 C -0.139 4.139 6 H 0.130 0.870 7 C -0.172 4.172 8 C -0.098 4.098 9 N -0.249 5.249 10 C -0.127 4.127 11 C 0.403 3.597 12 F -0.155 7.155 13 F -0.164 7.164 14 F -0.167 7.167 15 C -0.061 4.061 16 C -0.014 4.014 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.019 4.019 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.492 23.422 0.750 23.693 hybrid contribution 0.002 -1.374 -0.673 1.530 sum -3.490 22.048 0.077 22.323 Atomic orbital electron populations 1.21898 0.79925 1.02979 1.01952 1.48008 1.06928 1.06165 1.71603 1.20230 0.87774 0.84987 0.76323 1.90687 1.13872 1.87360 1.50427 1.22403 0.97787 0.92880 1.00877 0.86990 1.22919 1.01002 0.96323 0.96996 1.23195 0.94916 0.93136 0.98520 1.63563 1.08909 1.21677 1.30775 1.23403 0.97234 0.92352 0.99735 1.20442 0.78610 0.86017 0.74583 1.93206 1.93516 1.79794 1.49003 1.93156 1.49807 1.90757 1.82712 1.93191 1.76038 1.76279 1.71170 1.22852 0.94566 0.87482 1.01178 1.24063 0.98022 0.79782 0.99518 1.22650 0.96834 0.83484 0.93861 1.45699 1.81987 1.02200 1.03397 1.18948 1.41673 0.80210 0.94337 0.90078 1.24808 1.01843 0.98323 0.95343 1.69801 1.54472 1.34470 0.98046 0.86158 0.78137 0.84526 0.76693 1.21115 1.21500 1.20961 1.22967 0.98049 0.87313 0.93538 0.92326 0.90349 0.91467 0.89120 0.90501 0.89320 0.91129 0.89736 0.86097 0.91302 0.88812 0.86691 0.95052 0.90578 0.93477 0.93486 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 7.49 59.85 0.45 1.32 16 2 N -0.60 -8.90 3.09 -175.75 -0.54 -9.44 16 3 C 0.52 7.50 7.08 -10.99 -0.08 7.42 16 4 O -0.55 -9.89 15.28 5.56 0.08 -9.80 16 5 C -0.12 -1.17 2.44 -89.63 -0.22 -1.39 16 6 H 0.11 0.97 7.57 -51.93 -0.39 0.58 16 7 C -0.13 -1.13 5.38 -24.91 -0.13 -1.26 16 8 C 0.03 0.23 5.63 -2.84 -0.02 0.22 16 9 N -0.52 -4.47 5.08 -231.26 -1.18 -5.64 16 10 C 0.00 0.02 4.71 -3.83 -0.02 0.00 16 11 C 0.46 3.81 3.27 37.16 0.12 3.93 16 12 F -0.17 -1.68 17.24 2.25 0.04 -1.64 16 13 F -0.18 -1.64 14.49 2.25 0.03 -1.60 16 14 F -0.19 -1.61 17.32 2.25 0.04 -1.57 16 15 C 0.07 0.63 5.75 -2.29 -0.01 0.62 16 16 C 0.09 1.72 4.40 -70.15 -0.31 1.41 16 17 C 0.16 3.59 6.97 -2.84 -0.02 3.57 16 18 N -0.61 -15.30 3.70 -177.89 -0.66 -15.96 16 19 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.86 11.39 55.49 0.63 -26.23 16 23 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.11 2.20 8.46 -2.96 -0.03 2.17 16 28 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 29 H 0.08 1.00 6.35 -51.93 -0.33 0.67 16 30 H 0.07 0.57 5.95 -51.93 -0.31 0.26 16 31 H 0.09 0.64 6.39 -51.93 -0.33 0.30 16 32 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 35 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 36 H 0.12 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.07 0.74 7.18 -51.93 -0.37 0.37 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.12 2.43 7.22 -51.93 -0.37 2.06 16 40 H 0.03 0.70 6.83 -51.93 -0.35 0.34 16 41 H 0.08 1.96 7.17 -51.93 -0.37 1.59 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.66 6.84 -51.93 -0.36 0.31 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -32.21 356.04 -7.69 -39.90 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.97 Total: -1.56 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.52 Total: 11.35 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -1.75 Total: -57.28 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.11 Total: -4.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.21 -7.69 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043655853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.148 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds