Wall clock time and date at job start Tue Mar 31 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99831 * 2 1 4 4 O 1.21277 * 119.99747 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.99775 * 359.97438 * 3 2 1 6 6 H 1.09003 * 110.87868 * 62.39453 * 5 3 2 7 7 C 1.55141 * 110.99737 * 298.54576 * 5 3 2 8 8 C 1.54309 * 103.02260 * 206.22246 * 7 5 3 9 9 N 1.47437 * 107.23739 * 22.28099 * 8 7 5 10 10 C 1.46899 * 111.00221 * 123.25934 * 9 8 7 11 11 C 1.52997 * 109.47254 * 69.87589 * 10 9 8 12 12 F 1.39905 * 109.47157 * 59.99979 * 11 10 9 13 13 F 1.39900 * 109.47010 * 300.00370 * 11 10 9 14 14 F 1.39897 * 109.47422 * 180.02562 * 11 10 9 15 15 C 1.47845 * 108.56728 * 0.99088 * 9 8 7 16 16 C 1.46504 * 120.00279 * 179.97438 * 2 1 3 17 17 C 1.53943 * 113.73863 * 38.74349 * 16 2 1 18 18 N 1.47814 * 86.03509 * 222.08747 * 17 16 2 19 19 C 1.36938 * 134.45724 * 204.64743 * 18 17 16 20 20 H 1.07998 * 120.00223 * 179.85834 * 19 18 17 21 21 C 1.38814 * 119.99786 * 359.86357 * 19 18 17 22 22 N 1.31621 * 119.99974 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99942 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46848 * 59.99972 * 23 21 19 25 25 H 1.48496 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46999 * 300.00025 * 23 21 19 27 27 C 1.47583 * 91.05365 * 24.54814 * 18 17 16 28 28 H 1.09003 * 109.47057 * 90.00004 * 1 2 3 29 29 H 1.09002 * 109.47155 * 209.99839 * 1 2 3 30 30 H 1.08999 * 109.47381 * 329.99838 * 1 2 3 31 31 H 1.08995 * 110.70214 * 87.83033 * 7 5 3 32 32 H 1.09004 * 110.85015 * 324.67309 * 7 5 3 33 33 H 1.09005 * 109.88721 * 262.87564 * 8 7 5 34 34 H 1.09000 * 109.89208 * 141.68769 * 8 7 5 35 35 H 1.09002 * 109.47043 * 309.87518 * 10 9 8 36 36 H 1.09001 * 109.46901 * 189.87739 * 10 9 8 37 37 H 1.08999 * 110.37756 * 94.73374 * 15 9 8 38 38 H 1.08997 * 110.37801 * 217.07712 * 15 9 8 39 39 H 1.08992 * 112.94248 * 170.33504 * 16 2 1 40 40 H 1.09000 * 113.76909 * 336.34232 * 17 16 2 41 41 H 1.08994 * 113.77059 * 107.74781 * 17 16 2 42 42 H 0.96996 * 119.99318 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.77012 * 221.15843 * 27 18 17 44 44 H 1.08999 * 113.76657 * 89.75163 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.7820 2.5729 0.9017 7 6 0.5085 2.6073 -1.2733 8 6 0.3876 4.1352 -1.4517 9 7 1.5253 4.7493 -0.7429 10 6 2.3192 5.5892 -1.6497 11 6 1.5158 6.8363 -2.0242 12 9 1.2106 7.5595 -0.8661 13 9 0.3304 6.4536 -2.6609 14 9 2.2716 7.6359 -2.8882 15 6 2.3523 3.6723 -0.1581 16 6 2.1976 -1.2687 0.0006 17 6 1.5557 -2.3554 -0.8809 18 7 1.8611 -3.2878 0.2247 19 6 2.0639 -4.6393 0.3112 20 1 2.2810 -5.0927 1.2670 21 6 1.9907 -5.4265 -0.8299 22 7 1.7257 -4.8739 -1.9947 23 14 2.2681 -7.2701 -0.7121 24 1 1.2585 -7.8652 0.1998 25 1 2.1356 -7.8777 -2.0606 26 1 3.6300 -7.5328 -0.1818 27 6 1.8621 -2.1775 1.1970 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 -0.4723 2.1589 -1.1148 32 1 1.0022 2.1566 -2.1342 33 1 -0.5504 4.4858 -1.0211 34 1 0.4297 4.3894 -2.5109 35 1 2.5570 5.0257 -2.5520 36 1 3.2428 5.8873 -1.1535 37 1 3.1705 3.4145 -0.8305 38 1 2.7404 3.9770 0.8137 39 1 3.2669 -1.1420 -0.1680 40 1 0.4888 -2.2099 -1.0506 41 1 2.1092 -2.5618 -1.7968 42 1 1.6749 -5.4240 -2.7920 43 1 2.6600 -2.2422 1.9368 44 1 0.8855 -1.9796 1.6388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043655853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:22 Heat of formation + Delta-G solvation = -135.962104 kcal Electronic energy + Delta-G solvation = -29671.443918 eV Core-core repulsion = 25017.237684 eV Total energy + Delta-G solvation = -4654.206234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.04205 -48.60352 -48.48491 -41.60636 -40.00239 -38.80135 -36.01184 -34.29444 -33.58615 -30.20965 -29.83811 -28.94450 -27.88795 -26.63419 -25.46580 -24.21904 -23.27763 -22.08439 -20.97470 -19.88374 -19.50881 -19.42490 -18.87758 -18.46679 -18.02725 -17.49025 -17.05681 -16.89965 -16.13572 -16.11386 -15.70021 -15.42733 -15.33433 -14.96104 -14.88714 -14.77909 -14.66948 -14.61102 -14.41357 -14.30061 -14.18083 -13.79943 -13.55143 -13.28440 -13.18117 -13.10094 -12.87874 -12.80896 -12.58336 -12.57606 -12.26477 -12.17592 -12.04806 -11.98653 -11.71267 -11.55192 -10.88133 -10.74499 -9.62110 -9.54774 -8.97550 -7.94364 -5.28477 1.45124 1.48607 1.54686 1.58542 1.71575 1.96111 2.46144 2.55277 2.88529 3.09260 3.24604 3.30551 3.38839 3.50955 3.59716 3.73582 3.82047 4.07862 4.15609 4.26400 4.28935 4.31047 4.35691 4.39633 4.48317 4.65187 4.67248 4.73646 4.83691 4.85093 4.91659 4.95577 5.07726 5.17901 5.18511 5.23318 5.45135 5.62347 5.67650 5.71566 5.87892 6.48040 6.87493 7.16183 7.55929 8.49188 9.22459 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.033007 B = 0.002116 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.113628 B =13231.978521 C =13387.168813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.519 3.481 4 O -0.587 6.587 5 C -0.108 4.108 6 H 0.138 0.862 7 C -0.128 4.128 8 C 0.031 3.969 9 N -0.527 5.527 10 C 0.003 3.997 11 C 0.460 3.540 12 F -0.182 7.182 13 F -0.186 7.186 14 F -0.188 7.188 15 C 0.070 3.930 16 C 0.116 3.884 17 C 0.163 3.837 18 N -0.638 5.638 19 C -0.237 4.237 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.953 5.953 23 Si 0.981 3.019 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.115 3.885 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.049 0.951 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 24.573 1.522 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.327 5.327 3 C 0.308 3.692 4 O -0.468 6.468 5 C -0.129 4.129 6 H 0.156 0.844 7 C -0.167 4.167 8 C -0.096 4.096 9 N -0.252 5.252 10 C -0.127 4.127 11 C 0.406 3.594 12 F -0.163 7.163 13 F -0.168 7.168 14 F -0.170 7.170 15 C -0.057 4.057 16 C 0.010 3.990 17 C 0.036 3.964 18 N -0.365 5.365 19 C -0.365 4.365 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.204 1.204 27 C -0.011 4.011 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.852 24.607 1.794 25.145 hybrid contribution 0.423 -1.633 -0.980 1.951 sum -4.429 22.974 0.814 23.411 Atomic orbital electron populations 1.22156 0.77376 1.04467 1.03108 1.47961 1.08334 1.04762 1.71646 1.20994 0.87464 0.85982 0.74777 1.90674 1.16036 1.87993 1.52093 1.22395 0.97795 0.89934 1.02797 0.84449 1.22923 1.01444 0.96854 0.95459 1.23236 0.95060 0.92537 0.98762 1.63567 1.08987 1.21209 1.31395 1.23471 0.97342 0.91742 1.00138 1.20548 0.78497 0.86157 0.74214 1.93189 1.93598 1.80089 1.49469 1.93148 1.50110 1.90754 1.82772 1.93186 1.76076 1.76439 1.71250 1.22773 0.94198 0.87669 1.01107 1.23250 0.96771 0.81377 0.97572 1.22508 0.96803 0.84625 0.92429 1.46030 1.82373 1.02430 1.05703 1.19344 1.40798 0.81795 0.94569 0.89681 1.25656 1.02383 1.02686 0.95099 1.69990 1.56008 1.35647 0.98455 0.85114 0.78275 0.79307 0.76401 1.20032 1.21959 1.20362 1.23075 0.99248 0.85514 0.93263 0.91382 0.91421 0.87380 0.87002 0.91959 0.88303 0.90924 0.88851 0.84840 0.92907 0.88497 0.89158 0.94285 0.94533 0.94121 0.93259 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 7.49 127.77 0.96 2.38 16 2 N -0.60 -16.99 3.09 -828.33 -2.56 -19.56 16 3 C 0.52 14.28 7.08 87.65 0.62 14.90 16 4 O -0.59 -21.32 15.28 -3.02 -0.05 -21.37 16 5 C -0.11 -1.86 2.44 -10.15 -0.02 -1.88 16 6 H 0.14 1.77 7.57 -2.39 -0.02 1.75 16 7 C -0.13 -1.79 5.38 31.77 0.17 -1.62 16 8 C 0.03 0.40 5.63 86.64 0.49 0.89 16 9 N -0.53 -7.72 5.08 -885.56 -4.50 -12.23 16 10 C 0.00 0.04 4.71 86.30 0.41 0.45 16 11 C 0.46 6.89 3.27 71.98 0.24 7.12 16 12 F -0.18 -3.23 17.24 44.97 0.78 -2.45 16 13 F -0.19 -3.00 14.49 44.97 0.65 -2.34 16 14 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 15 C 0.07 1.21 5.75 86.78 0.50 1.70 16 16 C 0.12 4.45 4.40 46.75 0.21 4.66 16 17 C 0.16 7.55 6.97 86.44 0.60 8.15 16 18 N -0.64 -32.56 3.70 -716.73 -2.65 -35.22 16 19 C -0.24 -13.25 10.70 84.03 0.90 -12.35 16 20 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.95 -56.98 11.39 21.65 0.25 -56.74 16 23 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.11 4.58 8.46 86.49 0.73 5.31 16 28 H 0.07 1.27 7.68 -2.39 -0.02 1.26 16 29 H 0.07 1.55 6.35 -2.39 -0.02 1.54 16 30 H 0.11 1.31 5.95 -2.39 -0.01 1.30 16 31 H 0.11 1.10 6.39 -2.39 -0.02 1.08 16 32 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 33 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.07 0.94 5.99 -2.39 -0.01 0.92 16 35 H 0.09 1.04 7.96 -2.39 -0.02 1.02 16 36 H 0.13 1.34 8.07 -2.39 -0.02 1.32 16 37 H 0.05 1.09 7.18 -2.39 -0.02 1.08 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 3.96 7.22 -2.39 -0.02 3.94 16 40 H 0.04 1.74 6.83 -2.39 -0.02 1.73 16 41 H 0.04 1.97 7.17 -2.39 -0.02 1.95 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 2.16 6.84 -2.39 -0.02 2.14 16 Total: -1.00 -71.33 356.04 2.01 -69.33 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.03 Total: 8.92 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 6.26 Total: 26.49 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -9.47 Total: -123.73 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 2.21 Total: -7.03 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.33 2.01 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043655853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.635 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds