Wall clock time and date at job start Tue Mar 31 2020 18:50:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34777 * 120.00204 * 2 1
4 4 O 1.21693 * 120.00382 * 185.83898 * 3 2 1
5 5 C 1.46683 * 119.99677 * 5.84354 * 3 2 1
6 6 C 1.38158 * 126.18584 * 187.66074 * 5 3 2
7 7 C 1.38939 * 106.94677 * 179.87658 * 6 5 3
8 8 C 1.36274 * 108.02308 * 0.43690 * 7 6 5
9 9 N 1.34736 * 108.83585 * 359.67380 * 8 7 6
10 10 H 0.97008 * 125.71560 * 180.10326 * 9 8 7
11 11 C 1.51092 * 122.58458 * 179.58547 * 8 7 6
12 12 C 1.53547 * 107.71772 * 344.13207 * 11 8 7
13 13 O 1.42993 * 109.68502 * 48.02461 * 12 11 8
14 14 C 1.43421 * 114.33764 * 288.96503 * 13 12 11
15 15 C 1.46505 * 119.99884 * 180.02562 * 2 1 3
16 16 H 1.09003 * 110.63914 * 178.30792 * 15 2 1
17 17 C 1.54319 * 110.72128 * 301.45048 * 15 2 1
18 18 N 1.47017 * 107.27182 * 140.73389 * 17 15 2
19 19 C 1.36943 * 125.64983 * 181.08164 * 18 17 15
20 20 H 1.07998 * 119.99507 * 174.86995 * 19 18 17
21 21 C 1.38807 * 119.99547 * 354.87245 * 19 18 17
22 22 N 1.31616 * 120.00469 * 5.17646 * 21 19 18
23 23 Si 1.86801 * 119.99562 * 185.17296 * 21 19 18
24 24 H 1.48504 * 109.46991 * 94.99851 * 23 21 19
25 25 H 1.48500 * 109.47110 * 214.99458 * 23 21 19
26 26 H 1.48498 * 109.47354 * 334.99939 * 23 21 19
27 27 C 1.47433 * 108.70367 * 1.06076 * 18 17 15
28 28 C 1.54913 * 104.83031 * 335.87098 * 27 18 17
29 29 H 1.09004 * 111.00086 * 278.93715 * 28 27 18
30 30 O 1.42897 * 111.00345 * 155.08424 * 28 27 18
31 31 H 1.09007 * 109.46831 * 274.05009 * 1 2 3
32 32 H 1.08997 * 109.47189 * 34.04646 * 1 2 3
33 33 H 1.08995 * 109.47175 * 154.04835 * 1 2 3
34 34 H 1.07995 * 126.52968 * 0.02788 * 6 5 3
35 35 H 1.09004 * 109.80787 * 103.68475 * 11 8 7
36 36 H 1.09000 * 109.80989 * 224.51560 * 11 8 7
37 37 H 1.08994 * 109.43367 * 168.09271 * 12 11 8
38 38 H 1.08997 * 109.43273 * 288.00829 * 12 11 8
39 39 H 1.09006 * 109.76514 * 170.33620 * 14 13 12
40 40 H 1.09005 * 109.76197 * 291.10664 * 14 13 12
41 41 H 1.09004 * 109.87887 * 21.31565 * 17 15 2
42 42 H 1.09004 * 110.01231 * 260.22498 * 17 15 2
43 43 H 0.96998 * 120.00066 * 180.02562 * 22 21 19
44 44 H 1.08994 * 110.36729 * 94.71292 * 27 18 17
45 45 H 1.09000 * 110.36615 * 217.03752 * 27 18 17
46 46 H 0.96696 * 114.00301 * 61.45519 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3511 1.1700 -0.1072
5 6 1.4112 2.4342 0.1293
6 6 1.9480 3.7003 -0.0029
7 6 0.9101 4.6028 0.1938
8 6 -0.2242 3.8918 0.4487
9 7 0.0686 2.5772 0.4107
10 1 -0.5597 1.8526 0.5566
11 6 -1.5549 4.5532 0.7219
12 6 -1.2850 6.0292 1.0478
13 8 -0.4023 6.5848 0.0696
14 6 0.9484 6.1101 0.1549
15 6 2.1975 -1.2688 -0.0006
16 1 3.2726 -1.0917 -0.0306
17 6 1.8183 -2.1187 1.2304
18 7 1.7366 -3.5179 0.7864
19 6 1.4048 -4.5873 1.5747
20 1 1.2916 -5.5674 1.1353
21 6 1.2141 -4.4116 2.9383
22 7 1.2515 -3.2028 3.4577
23 14 0.9044 -5.8908 4.0363
24 1 2.1873 -6.3415 4.6332
25 1 -0.0401 -5.5146 5.1187
26 1 0.3198 -6.9922 3.2298
27 6 2.0706 -3.5788 -0.6484
28 6 1.7549 -2.1621 -1.1895
29 1 0.6892 -2.0482 -1.3881
30 8 2.5251 -1.8771 -2.3589
31 1 -0.3633 0.0726 1.0252
32 1 -0.3633 0.8515 -0.5753
33 1 -0.3633 -0.9240 -0.4497
34 1 2.9777 3.9425 -0.2203
35 1 -2.1917 4.4800 -0.1597
36 1 -2.0406 4.0697 1.5695
37 1 -2.2257 6.5798 1.0418
38 1 -0.8265 6.1050 2.0337
39 1 1.5116 6.4420 -0.7174
40 1 1.4161 6.4905 1.0630
41 1 0.8527 -1.7965 1.6201
42 1 2.5815 -2.0187 2.0022
43 1 1.1185 -3.0801 4.4107
44 1 3.1274 -3.8094 -0.7824
45 1 1.4524 -4.3231 -1.1504
46 1 2.3525 -2.4749 -3.0990
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001047406458.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:50:00
Heat of formation + Delta-G solvation = -51.856256 kcal
Electronic energy + Delta-G solvation = -29757.453813 eV
Core-core repulsion = 25648.751422 eV
Total energy + Delta-G solvation = -4108.702390 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.89832 -41.03930 -39.45742 -38.77492 -36.87141 -36.48850 -33.92264 -33.42750
-32.63877 -30.76154 -29.94729 -28.98433 -28.10590 -26.87814 -25.92843 -24.53351
-23.09638 -22.39077 -21.60636 -20.89861 -20.09423 -19.08185 -18.93572 -18.34898
-17.42971 -17.36040 -16.92510 -16.79365 -16.56515 -16.11669 -15.82583 -15.57136
-15.33459 -15.09347 -14.93463 -14.60297 -14.53068 -14.43017 -14.07357 -14.02700
-13.69334 -13.50892 -13.34423 -13.20439 -13.02795 -12.94325 -12.73961 -12.55813
-12.35853 -12.11907 -11.93558 -11.75623 -11.69732 -11.31634 -11.03298 -10.77846
-10.75189 -9.99838 -9.77245 -9.03145 -9.01467 -7.91861 -5.29512 0.32200
1.45044 1.47872 1.49597 1.55968 1.67116 2.01725 2.22057 2.44815
2.97397 3.03157 3.28846 3.43921 3.62178 3.66623 3.71747 3.82475
3.91693 3.96061 3.99706 4.04639 4.19530 4.27496 4.36202 4.42861
4.49447 4.54071 4.57083 4.66362 4.78179 4.80288 4.82365 4.91397
5.01075 5.01885 5.08975 5.15601 5.39511 5.43757 5.60748 5.67296
5.78206 6.06778 6.21673 6.23375 6.36667 6.84217 6.94259 7.00111
7.65348 8.28862 9.18393
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.015749 B = 0.002974 C = 0.002673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1777.474871 B = 9412.185667 C =10473.142668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 N -0.596 5.596
3 C 0.584 3.416
4 O -0.576 6.576
5 C -0.076 4.076
6 C -0.096 4.096
7 C -0.236 4.236
8 C 0.060 3.940
9 N -0.519 5.519
10 H 0.430 0.570
11 C -0.085 4.085
12 C 0.062 3.938
13 O -0.395 6.395
14 C 0.139 3.861
15 C 0.131 3.869
16 H 0.078 0.922
17 C 0.194 3.806
18 N -0.619 5.619
19 C -0.243 4.243
20 H 0.091 0.909
21 C -0.061 4.061
22 N -0.950 5.950
23 Si 0.980 3.020
24 H -0.293 1.293
25 H -0.293 1.293
26 H -0.263 1.263
27 C 0.104 3.896
28 C 0.097 3.903
29 H 0.089 0.911
30 O -0.568 6.568
31 H 0.069 0.931
32 H 0.095 0.905
33 H 0.094 0.906
34 H 0.145 0.855
35 H 0.104 0.896
36 H 0.110 0.890
37 H 0.129 0.871
38 H 0.060 0.940
39 H 0.110 0.890
40 H 0.072 0.928
41 H 0.039 0.961
42 H 0.005 0.995
43 H 0.248 0.752
44 H 0.026 0.974
45 H 0.070 0.930
46 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.217 16.106 -8.425 20.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 N -0.327 5.327
3 C 0.376 3.624
4 O -0.456 6.456
5 C -0.188 4.188
6 C -0.123 4.123
7 C -0.242 4.242
8 C -0.061 4.061
9 N -0.121 5.121
10 H 0.277 0.723
11 C -0.123 4.123
12 C -0.014 4.014
13 O -0.313 6.313
14 C 0.062 3.938
15 C 0.026 3.974
16 H 0.096 0.904
17 C 0.068 3.932
18 N -0.348 5.348
19 C -0.372 4.372
20 H 0.109 0.891
21 C -0.255 4.255
22 N -0.598 5.598
23 Si 0.808 3.192
24 H -0.220 1.220
25 H -0.220 1.220
26 H -0.187 1.187
27 C -0.022 4.022
28 C 0.037 3.963
29 H 0.106 0.894
30 O -0.375 6.375
31 H 0.087 0.913
32 H 0.113 0.887
33 H 0.113 0.887
34 H 0.163 0.837
35 H 0.122 0.878
36 H 0.128 0.872
37 H 0.147 0.853
38 H 0.079 0.921
39 H 0.128 0.872
40 H 0.090 0.910
41 H 0.057 0.943
42 H 0.023 0.977
43 H 0.057 0.943
44 H 0.044 0.956
45 H 0.088 0.912
46 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges -9.573 16.443 -8.033 20.653
hybrid contribution 0.126 -2.122 0.904 2.310
sum -9.447 14.321 -7.129 18.579
Atomic orbital electron populations
1.22305 0.78445 1.05069 1.02656 1.47548 1.07707 1.04798 1.72647
1.17482 0.86386 0.82772 0.75803 1.90775 1.14939 1.87094 1.52805
1.20066 0.84640 0.93983 1.20140 1.20958 0.99650 0.89613 1.02033
1.20215 0.93055 0.97674 1.13263 1.21008 0.98605 0.82839 1.03657
1.42691 1.08162 1.08140 1.53154 0.72271 1.21232 0.90212 0.96202
1.04677 1.22796 0.95411 0.91686 0.91556 1.87993 1.19991 1.66893
1.56451 1.21102 0.83599 0.86037 1.03050 1.22131 0.96782 0.82914
0.95577 0.90367 1.21042 0.98687 0.82913 0.90604 1.44508 1.81181
1.03361 1.05707 1.19487 1.39845 0.88455 0.89378 0.89129 1.25677
1.02229 0.99447 0.98100 1.70147 1.57038 1.21145 1.11455 0.85043
0.76970 0.78804 0.78387 1.22012 1.22004 1.18741 1.22382 0.98441
0.96188 0.85148 1.23166 0.94976 0.93428 0.84770 0.89357 1.86528
1.67183 1.59636 1.24191 0.91305 0.88691 0.88722 0.83687 0.87770
0.87201 0.85345 0.92146 0.87237 0.90998 0.94263 0.97653 0.94291
0.95614 0.91220 0.75260
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.48 7.61 127.77 0.97 2.45 16
2 N -0.60 -21.39 2.89 -820.64 -2.37 -23.76 16
3 C 0.58 22.58 7.63 86.45 0.66 23.24 16
4 O -0.58 -26.90 16.28 -4.33 -0.07 -26.97 16
5 C -0.08 -2.37 6.63 40.37 0.27 -2.10 16
6 C -0.10 -2.77 10.64 22.42 0.24 -2.53 16
7 C -0.24 -5.49 6.02 -20.11 -0.12 -5.61 16
8 C 0.06 1.23 7.14 41.78 0.30 1.52 16
9 N -0.52 -11.95 5.03 -171.10 -0.86 -12.81 16
10 H 0.43 8.04 4.97 -92.70 -0.46 7.58 16
11 C -0.09 -1.02 6.56 30.16 0.20 -0.82 16
12 C 0.06 0.73 6.78 72.17 0.49 1.22 16
13 O -0.39 -7.00 10.75 -148.98 -1.60 -8.60 16
14 C 0.14 2.51 7.25 71.28 0.52 3.03 16
15 C 0.13 5.47 3.09 46.18 0.14 5.62 16
16 H 0.08 3.79 7.00 -2.39 -0.02 3.77 16
17 C 0.19 9.60 5.02 86.73 0.44 10.04 16
18 N -0.62 -30.88 3.39 -691.98 -2.35 -33.22 16
19 C -0.24 -13.06 10.27 84.03 0.86 -12.20 16
20 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16
21 C -0.06 -3.37 5.48 84.86 0.47 -2.90 16
22 N -0.95 -55.57 10.34 21.65 0.22 -55.35 16
23 Si 0.98 44.29 29.56 68.60 2.03 46.32 16
24 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16
25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
26 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16
27 C 0.10 4.10 6.96 86.85 0.60 4.70 16
28 C 0.10 3.37 3.95 31.99 0.13 3.50 16
29 H 0.09 2.68 6.15 -2.38 -0.01 2.67 16
30 O -0.57 -17.98 13.47 -148.98 -2.01 -19.99 16
31 H 0.07 1.72 7.45 -2.38 -0.02 1.70 16
32 H 0.10 1.90 5.48 -2.39 -0.01 1.88 16
33 H 0.09 2.35 6.13 -2.39 -0.01 2.33 16
34 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16
35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
37 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16
38 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16
39 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16
40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16
41 H 0.04 2.03 6.43 -2.38 -0.02 2.01 16
42 H 0.01 0.31 7.36 -2.38 -0.02 0.29 16
43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16
44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
46 H 0.40 8.02 9.11 -74.06 -0.67 7.35 16
Total: -1.00 -78.63 363.42 -0.94 -79.57
By element:
Atomic # 1 Polarization: 25.74 SS G_CDS: -0.10 Total: 25.65 kcal
Atomic # 6 Polarization: 23.01 SS G_CDS: 6.16 Total: 29.16 kcal
Atomic # 7 Polarization: -119.79 SS G_CDS: -5.35 Total: -125.14 kcal
Atomic # 8 Polarization: -51.88 SS G_CDS: -3.68 Total: -55.56 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal
Total: -78.63 -0.94 -79.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047406458.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.719 kcal
(2) G-P(sol) polarization free energy of solvation -78.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds