Wall clock time and date at job start Tue Mar 31 2020 18:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99785 * 2 1 4 4 C 1.39285 * 120.85095 * 359.97438 * 3 2 1 5 5 C 1.37947 * 119.09668 * 180.02562 * 4 3 2 6 6 N 1.31973 * 120.82433 * 0.02562 * 5 4 3 7 7 C 1.31954 * 121.86261 * 359.72122 * 6 5 4 8 8 C 1.37992 * 120.81884 * 0.53808 * 7 6 5 9 9 C 1.50701 * 120.45486 * 179.75456 * 8 7 6 10 10 C 1.50703 * 109.47064 * 264.72319 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99832 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 15 15 H 1.08995 * 110.64158 * 3.13788 * 14 12 10 16 16 C 1.54319 * 110.72250 * 126.47378 * 14 12 10 17 17 N 1.47022 * 107.27423 * 140.55658 * 16 14 12 18 18 C 1.36932 * 125.65267 * 181.02845 * 17 16 14 19 19 H 1.08006 * 119.99923 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00193 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99779 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46954 * 59.99810 * 22 20 18 24 24 H 1.48496 * 109.47133 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47231 * 300.00181 * 22 20 18 26 26 C 1.47433 * 108.69997 * 1.05789 * 17 16 14 27 27 C 1.54914 * 104.83194 * 335.87254 * 26 17 16 28 28 H 1.08994 * 111.00344 * 278.93611 * 27 26 17 29 29 O 1.42903 * 111.00001 * 155.08075 * 27 26 17 30 30 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46823 * 299.99741 * 1 2 3 32 32 H 1.08995 * 109.47266 * 59.99631 * 1 2 3 33 33 H 1.08010 * 120.45222 * 0.04704 * 4 3 2 34 34 H 1.07997 * 119.59112 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.59503 * 180.29457 * 7 6 5 36 36 H 1.09002 * 109.47060 * 24.72282 * 9 8 7 37 37 H 1.09001 * 109.47380 * 144.72370 * 9 8 7 38 38 H 1.08999 * 109.47333 * 89.99805 * 13 12 10 39 39 H 1.08997 * 109.47024 * 210.00620 * 13 12 10 40 40 H 1.09000 * 109.46875 * 330.00379 * 13 12 10 41 41 H 1.09002 * 109.88474 * 259.97105 * 16 14 12 42 42 H 1.09001 * 109.88474 * 21.14054 * 16 14 12 43 43 H 0.97006 * 119.99839 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36674 * 217.03333 * 26 17 16 45 45 H 1.09003 * 110.45502 * 94.75946 * 26 17 16 46 46 H 0.96702 * 113.99800 * 67.80862 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6458 -0.0016 7 6 4.0231 2.5510 0.0039 8 6 3.4346 1.3029 -0.0008 9 6 4.2838 0.0580 -0.0001 10 6 4.4642 -0.4278 -1.4152 11 8 3.9531 0.1770 -2.3338 12 7 5.1927 -1.5350 -1.6599 13 6 5.8097 -2.2660 -0.5503 14 6 5.3686 -2.0070 -3.0356 15 1 4.8956 -1.3228 -3.7400 16 6 6.8657 -2.1862 -3.3643 17 7 6.9919 -3.4070 -4.1736 18 6 8.1633 -3.9286 -4.6541 19 1 9.1005 -3.4342 -4.4448 20 6 8.1463 -5.0928 -5.4100 21 7 7.0043 -5.6955 -5.6645 22 14 9.7443 -5.8039 -6.0659 23 1 10.6455 -6.1264 -4.9305 24 1 9.4565 -7.0400 -6.8367 25 1 10.4013 -4.8101 -6.9524 26 6 5.6481 -3.9764 -4.3830 27 6 4.8024 -3.4422 -3.2001 28 1 4.9710 -4.0341 -2.3006 29 8 3.4140 -3.4097 -3.5368 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2244 2.3567 -0.0002 34 1 1.4008 4.5174 -0.0011 35 1 5.1000 2.6328 0.0081 36 1 5.2581 0.2830 0.4338 37 1 3.7934 -0.7162 0.5900 38 1 5.1169 -3.0238 -0.1845 39 1 6.7248 -2.7468 -0.8961 40 1 6.0465 -1.5711 0.2554 41 1 7.2264 -1.3273 -3.9303 42 1 7.4375 -2.2919 -2.4424 43 1 6.9925 -6.5093 -6.1924 44 1 5.6895 -5.0654 -4.3584 45 1 5.2330 -3.6345 -5.3311 46 1 3.0161 -4.2838 -3.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047424996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:32 Heat of formation + Delta-G solvation = -40.231369 kcal Electronic energy + Delta-G solvation = -29633.181040 eV Core-core repulsion = 25524.982743 eV Total energy + Delta-G solvation = -4108.198297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98906 -39.71690 -38.36494 -37.75145 -35.18183 -34.70540 -33.48811 -31.89570 -31.38249 -29.11495 -28.07952 -27.65586 -27.11161 -26.43096 -24.36589 -23.09067 -22.75466 -20.46277 -20.38694 -18.81640 -18.46316 -17.39715 -17.32858 -17.09039 -16.43949 -16.00968 -15.81105 -15.44325 -15.19188 -14.93810 -14.73457 -14.42492 -14.00518 -13.81088 -13.65147 -13.27817 -13.25229 -13.03028 -12.79139 -12.46339 -12.27771 -12.20467 -11.96912 -11.79709 -11.68675 -11.48705 -11.34801 -11.19096 -10.94511 -10.82915 -10.22079 -9.93434 -9.76825 -9.69762 -9.66231 -9.32484 -9.21057 -8.83514 -8.73308 -8.29181 -6.94387 -5.73360 -3.16955 0.91339 1.20907 2.85889 2.91581 3.16902 3.36465 3.41043 3.42191 3.69106 4.24328 4.40730 4.44044 4.57778 4.64958 4.69823 4.81956 4.86152 4.89286 5.05272 5.11197 5.20850 5.24939 5.34708 5.40336 5.41032 5.50523 5.57766 5.65832 5.67872 5.76572 5.85727 5.88413 5.92673 6.11431 6.19993 6.37686 6.48850 6.62990 6.93975 6.98659 7.34210 7.50238 7.63946 7.72171 7.85994 8.16706 8.27237 8.42928 9.11473 9.72153 10.34879 11.30106 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002675 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.478048 B =10465.094955 C =11089.151873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.508 5.508 7 C 0.144 3.856 8 C -0.147 4.147 9 C -0.087 4.087 10 C 0.519 3.481 11 O -0.533 6.533 12 N -0.602 5.602 13 C 0.070 3.930 14 C 0.137 3.863 15 H 0.110 0.890 16 C 0.130 3.870 17 N -0.599 5.599 18 C -0.225 4.225 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.129 3.871 27 C 0.065 3.935 28 H 0.059 0.941 29 O -0.563 6.563 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.254 0.746 44 H 0.111 0.889 45 H 0.024 0.976 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 10.432 16.681 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.220 5.220 7 C -0.012 4.012 8 C -0.150 4.150 9 C -0.128 4.128 10 C 0.307 3.693 11 O -0.409 6.409 12 N -0.335 5.335 13 C -0.073 4.073 14 C 0.034 3.966 15 H 0.128 0.872 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.353 4.353 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.748 3.252 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.003 3.997 27 C 0.004 3.996 28 H 0.076 0.924 29 O -0.367 6.367 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.129 0.871 45 H 0.042 0.958 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.236 11.799 16.092 22.900 hybrid contribution -0.001 -1.799 -0.458 1.857 sum -11.237 10.000 15.635 21.696 Atomic orbital electron populations 1.23133 0.77785 1.04464 1.01438 1.86095 1.21851 1.26138 1.87327 1.19112 0.91848 0.84733 0.91271 1.22163 1.01416 0.93183 1.11610 1.22509 0.90350 0.96865 0.92758 1.67721 1.07086 1.31881 1.15307 1.22506 1.00198 0.86117 0.92345 1.19767 0.90899 0.96478 1.07872 1.20441 1.00666 0.95856 0.95790 1.20354 0.78106 0.80105 0.90754 1.90697 1.47709 1.56290 1.46239 1.47759 1.51362 1.26775 1.07559 1.21860 0.99297 0.97019 0.89100 1.22112 0.96597 0.95542 0.82383 0.87209 1.21562 0.91899 0.91085 0.95175 1.44266 1.03358 1.24293 1.60729 1.19042 0.84560 1.05210 1.26515 0.90236 1.24811 0.97377 0.98056 1.00249 1.69750 1.23240 1.20505 1.43601 0.86104 0.82162 0.78327 0.78605 1.21068 1.21524 1.21105 1.22554 0.82950 1.01908 0.92288 1.23716 0.81284 0.95770 0.98782 0.92357 1.86465 1.23518 1.33446 1.93252 0.87817 0.92517 0.92262 0.84456 0.82661 0.82268 0.87763 0.87685 0.92669 0.89768 0.91203 0.95075 0.94760 0.93532 0.87147 0.95813 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -3.69 9.77 -18.91 -0.18 -3.87 16 3 C 0.18 2.30 6.70 -38.82 -0.26 2.04 16 4 C -0.26 -2.73 9.11 -39.30 -0.36 -3.09 16 5 C 0.13 1.40 11.17 -17.60 -0.20 1.20 16 6 N -0.51 -6.42 10.36 -13.33 -0.14 -6.56 16 7 C 0.14 1.75 10.83 -17.59 -0.19 1.56 16 8 C -0.15 -1.86 4.40 -104.34 -0.46 -2.32 16 9 C -0.09 -1.01 4.16 -29.03 -0.12 -1.13 16 10 C 0.52 8.42 7.67 -10.98 -0.08 8.34 16 11 O -0.53 -10.95 15.41 5.56 0.09 -10.86 16 12 N -0.60 -9.62 2.89 -171.84 -0.50 -10.11 16 13 C 0.07 0.84 9.10 59.85 0.54 1.39 16 14 C 0.14 2.70 3.10 -66.10 -0.20 2.49 16 15 H 0.11 2.47 7.00 -51.93 -0.36 2.11 16 16 C 0.13 2.73 6.80 -3.07 -0.02 2.71 16 17 N -0.60 -15.13 3.39 -170.06 -0.58 -15.71 16 18 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.13 3.12 5.62 -2.52 -0.01 3.10 16 27 C 0.07 1.30 4.00 -24.58 -0.10 1.20 16 28 H 0.06 1.10 7.29 -51.93 -0.38 0.72 16 29 O -0.56 -10.73 13.47 -35.23 -0.47 -11.21 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 32 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 33 H 0.14 1.03 6.47 -52.48 -0.34 0.69 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.10 0.87 7.32 -51.93 -0.38 0.49 16 37 H 0.10 1.09 7.73 -51.93 -0.40 0.69 16 38 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.08 1.10 6.08 -51.93 -0.32 0.78 16 40 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.67 5.93 -51.93 -0.31 0.36 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 45 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.37 5.49 9.12 45.56 0.42 5.91 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -36.01 373.97 -6.92 -42.93 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.59 Total: 6.82 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -0.72 Total: 12.05 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.65 Total: -58.08 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.57 Total: -25.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.01 -6.92 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047424996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.699 kcal (2) G-P(sol) polarization free energy of solvation -36.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds