Wall clock time and date at job start Tue Mar 31 2020 18:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99785 * 2 1 4 4 C 1.39285 * 120.85095 * 359.97438 * 3 2 1 5 5 C 1.37947 * 119.09668 * 180.02562 * 4 3 2 6 6 N 1.31973 * 120.82433 * 0.02562 * 5 4 3 7 7 C 1.31954 * 121.86261 * 359.72122 * 6 5 4 8 8 C 1.37992 * 120.81884 * 0.53808 * 7 6 5 9 9 C 1.50701 * 120.45486 * 179.75456 * 8 7 6 10 10 C 1.50703 * 109.47064 * 264.72319 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99832 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 15 15 H 1.08995 * 110.64158 * 3.13788 * 14 12 10 16 16 C 1.54319 * 110.72250 * 126.47378 * 14 12 10 17 17 N 1.47022 * 107.27423 * 140.55658 * 16 14 12 18 18 C 1.36932 * 125.65267 * 181.02845 * 17 16 14 19 19 H 1.08006 * 119.99923 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00193 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99779 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46954 * 59.99810 * 22 20 18 24 24 H 1.48496 * 109.47133 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47231 * 300.00181 * 22 20 18 26 26 C 1.47433 * 108.69997 * 1.05789 * 17 16 14 27 27 C 1.54914 * 104.83194 * 335.87254 * 26 17 16 28 28 H 1.08994 * 111.00344 * 278.93611 * 27 26 17 29 29 O 1.42903 * 111.00001 * 155.08075 * 27 26 17 30 30 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46823 * 299.99741 * 1 2 3 32 32 H 1.08995 * 109.47266 * 59.99631 * 1 2 3 33 33 H 1.08010 * 120.45222 * 0.04704 * 4 3 2 34 34 H 1.07997 * 119.59112 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.59503 * 180.29457 * 7 6 5 36 36 H 1.09002 * 109.47060 * 24.72282 * 9 8 7 37 37 H 1.09001 * 109.47380 * 144.72370 * 9 8 7 38 38 H 1.08999 * 109.47333 * 89.99805 * 13 12 10 39 39 H 1.08997 * 109.47024 * 210.00620 * 13 12 10 40 40 H 1.09000 * 109.46875 * 330.00379 * 13 12 10 41 41 H 1.09002 * 109.88474 * 259.97105 * 16 14 12 42 42 H 1.09001 * 109.88474 * 21.14054 * 16 14 12 43 43 H 0.97006 * 119.99839 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36674 * 217.03333 * 26 17 16 45 45 H 1.09003 * 110.45502 * 94.75946 * 26 17 16 46 46 H 0.96702 * 113.99800 * 67.80862 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6458 -0.0016 7 6 4.0231 2.5510 0.0039 8 6 3.4346 1.3029 -0.0008 9 6 4.2838 0.0580 -0.0001 10 6 4.4642 -0.4278 -1.4152 11 8 3.9531 0.1770 -2.3338 12 7 5.1927 -1.5350 -1.6599 13 6 5.8097 -2.2660 -0.5503 14 6 5.3686 -2.0070 -3.0356 15 1 4.8956 -1.3228 -3.7400 16 6 6.8657 -2.1862 -3.3643 17 7 6.9919 -3.4070 -4.1736 18 6 8.1633 -3.9286 -4.6541 19 1 9.1005 -3.4342 -4.4448 20 6 8.1463 -5.0928 -5.4100 21 7 7.0043 -5.6955 -5.6645 22 14 9.7443 -5.8039 -6.0659 23 1 10.6455 -6.1264 -4.9305 24 1 9.4565 -7.0400 -6.8367 25 1 10.4013 -4.8101 -6.9524 26 6 5.6481 -3.9764 -4.3830 27 6 4.8024 -3.4422 -3.2001 28 1 4.9710 -4.0341 -2.3006 29 8 3.4140 -3.4097 -3.5368 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2244 2.3567 -0.0002 34 1 1.4008 4.5174 -0.0011 35 1 5.1000 2.6328 0.0081 36 1 5.2581 0.2830 0.4338 37 1 3.7934 -0.7162 0.5900 38 1 5.1169 -3.0238 -0.1845 39 1 6.7248 -2.7468 -0.8961 40 1 6.0465 -1.5711 0.2554 41 1 7.2264 -1.3273 -3.9303 42 1 7.4375 -2.2919 -2.4424 43 1 6.9925 -6.5093 -6.1924 44 1 5.6895 -5.0654 -4.3584 45 1 5.2330 -3.6345 -5.3311 46 1 3.0161 -4.2838 -3.6498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047424996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:31 Heat of formation + Delta-G solvation = -68.199883 kcal Electronic energy + Delta-G solvation = -29634.393846 eV Core-core repulsion = 25524.982743 eV Total energy + Delta-G solvation = -4109.411103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87563 -41.00786 -39.36988 -39.11633 -36.75850 -36.26874 -34.47657 -33.72724 -32.18324 -30.69114 -29.39448 -28.63926 -28.26843 -27.72592 -26.17659 -23.88596 -23.74909 -22.34802 -21.78337 -20.12521 -19.27744 -19.04356 -18.74739 -18.17058 -17.78528 -17.33925 -16.81219 -16.69934 -16.40529 -16.01997 -15.83215 -15.66090 -15.31906 -15.16019 -14.86337 -14.66088 -14.33834 -14.31155 -14.12306 -13.81785 -13.55056 -13.27602 -13.20588 -13.11389 -13.04810 -12.85559 -12.68309 -12.62123 -12.47864 -12.10814 -12.08279 -11.90474 -11.47441 -11.13198 -10.84472 -10.75908 -10.51754 -10.09281 -9.71636 -9.63555 -8.97603 -7.80840 -5.28203 0.09293 0.36324 1.48121 1.51488 1.57639 1.64875 1.94485 2.19736 2.48038 2.83461 3.09519 3.30618 3.47673 3.65203 3.68090 3.75222 3.80944 3.85219 3.95820 4.08357 4.16551 4.20447 4.29928 4.32991 4.33674 4.40282 4.46697 4.53851 4.61910 4.66268 4.68654 4.77900 4.80170 4.95671 5.00027 5.02298 5.09078 5.34999 5.44370 5.53555 5.59551 5.66552 6.19500 6.21568 6.44109 6.82868 7.03562 7.03796 7.20024 7.68793 8.31727 9.20631 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002675 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.478048 B =10465.094955 C =11089.151873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.325 6.325 3 C 0.166 3.834 4 C -0.263 4.263 5 C 0.125 3.875 6 N -0.533 5.533 7 C 0.133 3.867 8 C -0.168 4.168 9 C -0.074 4.074 10 C 0.515 3.485 11 O -0.585 6.585 12 N -0.601 5.601 13 C 0.063 3.937 14 C 0.148 3.852 15 H 0.075 0.925 16 C 0.132 3.868 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.087 0.913 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.282 1.282 26 C 0.136 3.864 27 C 0.086 3.914 28 H 0.079 0.921 29 O -0.572 6.572 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.164 0.836 34 H 0.185 0.815 35 H 0.176 0.824 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.249 0.751 44 H 0.089 0.911 45 H -0.016 1.016 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 10.779 19.211 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.112 3.888 4 C -0.284 4.284 5 C -0.031 4.031 6 N -0.245 5.245 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.114 4.114 10 C 0.305 3.695 11 O -0.464 6.464 12 N -0.333 5.333 13 C -0.078 4.078 14 C 0.043 3.957 15 H 0.093 0.907 16 C 0.006 3.994 17 N -0.345 5.345 18 C -0.370 4.370 19 H 0.105 0.895 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.812 3.188 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.010 3.990 27 C 0.025 3.975 28 H 0.097 0.903 29 O -0.379 6.379 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.202 0.798 35 H 0.193 0.807 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.002 0.998 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -11.122 12.145 18.675 24.899 hybrid contribution -0.134 -1.864 -1.264 2.256 sum -11.257 10.281 17.411 23.142 Atomic orbital electron populations 1.23401 0.75953 1.05755 1.02529 1.86052 1.23893 1.26314 1.87357 1.19431 0.92339 0.85486 0.91511 1.22471 1.02789 0.92498 1.10628 1.23051 0.90064 0.98227 0.91759 1.67749 1.08178 1.32347 1.16244 1.22831 1.01138 0.86066 0.92158 1.19978 0.91453 0.96953 1.08758 1.20462 1.02718 0.95800 0.92406 1.21234 0.76794 0.79247 0.92253 1.90674 1.49729 1.57781 1.48264 1.47815 1.51601 1.27131 1.06706 1.22170 0.98828 0.98150 0.88627 1.21621 0.95064 0.94551 0.84450 0.90712 1.21642 0.93387 0.89061 0.95335 1.44513 1.03154 1.25668 1.61150 1.19444 0.85577 1.05425 1.26600 0.89515 1.25669 1.00548 0.98580 1.00807 1.69984 1.25113 1.20607 1.44128 0.85065 0.78528 0.77094 0.78088 1.19622 1.21999 1.20814 1.22317 0.83607 1.00520 0.92549 1.23417 0.80951 0.95846 0.97288 0.90280 1.86439 1.22895 1.35354 1.93192 0.86560 0.90208 0.92316 0.81847 0.79816 0.80683 0.84066 0.86049 0.91283 0.90720 0.86989 0.96202 0.92177 0.94099 0.89356 0.99794 0.75911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.84 113.37 1.12 1.36 16 2 O -0.33 -7.43 9.77 -90.59 -0.88 -8.31 16 3 C 0.17 3.93 6.70 22.76 0.15 4.08 16 4 C -0.26 -5.03 9.11 22.45 0.20 -4.83 16 5 C 0.12 2.45 11.17 84.60 0.95 3.39 16 6 N -0.53 -12.87 10.36 -196.09 -2.03 -14.90 16 7 C 0.13 3.08 10.83 84.62 0.92 3.99 16 8 C -0.17 -4.00 4.40 -19.68 -0.09 -4.08 16 9 C -0.07 -1.52 4.16 29.10 0.12 -1.40 16 10 C 0.51 16.06 7.67 87.66 0.67 16.73 16 11 O -0.58 -24.30 15.41 -3.02 -0.05 -24.35 16 12 N -0.60 -18.24 2.89 -815.97 -2.35 -20.59 16 13 C 0.06 1.30 9.10 127.77 1.16 2.47 16 14 C 0.15 5.86 3.10 46.18 0.14 6.01 16 15 H 0.07 3.51 7.00 -2.39 -0.02 3.49 16 16 C 0.13 5.57 6.80 86.73 0.59 6.16 16 17 N -0.62 -31.72 3.39 -691.95 -2.35 -34.07 16 18 C -0.24 -13.29 10.27 84.04 0.86 -12.43 16 19 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 20 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 21 N -0.95 -55.37 10.09 21.65 0.22 -55.15 16 22 Si 0.98 44.56 29.55 68.60 2.03 46.59 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.14 6.82 5.62 86.86 0.49 7.31 16 27 C 0.09 3.42 4.00 31.99 0.13 3.55 16 28 H 0.08 2.85 7.29 -2.39 -0.02 2.83 16 29 O -0.57 -21.82 13.47 -148.98 -2.01 -23.83 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 0.71 7.71 -2.39 -0.02 0.69 16 32 H 0.06 0.80 7.71 -2.39 -0.02 0.78 16 33 H 0.16 2.06 6.47 -2.91 -0.02 2.04 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.14 1.78 7.32 -2.39 -0.02 1.76 16 37 H 0.12 2.12 7.73 -2.39 -0.02 2.10 16 38 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 39 H 0.07 1.72 6.08 -2.39 -0.01 1.70 16 40 H 0.11 1.37 6.44 -2.39 -0.02 1.35 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 2.25 5.93 -2.39 -0.01 2.24 16 43 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 44 H 0.09 4.83 5.87 -2.39 -0.01 4.81 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.39 11.38 9.12 -74.06 -0.68 10.71 16 Total: -1.00 -81.36 373.97 0.80 -80.56 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.34 Total: 24.80 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 7.88 Total: 29.26 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.52 Total: -124.72 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.94 Total: -56.49 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -81.36 0.80 -80.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047424996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.360 kcal (2) G-P(sol) polarization free energy of solvation -81.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds