Wall clock time and date at job start Tue Mar 31 2020 18:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99641 * 2 1 4 4 O 1.21584 * 119.99758 * 183.74673 * 3 2 1 5 5 C 1.47509 * 120.00487 * 3.75267 * 3 2 1 6 6 O 1.35196 * 127.15316 * 352.53379 * 5 3 2 7 7 N 1.21469 * 111.55649 * 179.97438 * 6 5 3 8 8 C 1.29071 * 111.68507 * 359.90238 * 7 6 5 9 9 C 1.35247 * 127.15783 * 172.56382 * 5 3 2 10 10 C 1.50108 * 131.33464 * 0.21336 * 9 5 3 11 11 C 1.53573 * 108.01449 * 163.82620 * 10 9 5 12 12 C 1.53004 * 109.80880 * 50.05030 * 11 10 9 13 13 C 1.50401 * 130.37935 * 180.42519 * 8 7 6 14 14 C 1.46495 * 120.00232 * 180.02562 * 2 1 3 15 15 H 1.08992 * 110.88730 * 177.56700 * 14 2 1 16 16 C 1.54914 * 111.00356 * 301.45179 * 14 2 1 17 17 N 1.47425 * 104.83178 * 155.08238 * 16 14 2 18 18 C 1.36938 * 125.64719 * 155.90766 * 17 16 14 19 19 H 1.07997 * 119.99895 * 354.76176 * 18 17 16 20 20 C 1.38814 * 119.99936 * 174.75597 * 18 17 16 21 21 N 1.31623 * 119.99786 * 5.42699 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 185.41976 * 20 18 17 23 23 H 1.48503 * 109.46987 * 95.00056 * 22 20 18 24 24 H 1.48493 * 109.46960 * 215.00134 * 22 20 18 25 25 H 1.48498 * 109.46795 * 335.00366 * 22 20 18 26 26 C 1.47029 * 108.70437 * 335.87087 * 17 16 14 27 27 C 1.54326 * 107.26977 * 1.05760 * 26 17 16 28 28 H 1.08993 * 110.72161 * 263.83017 * 27 26 17 29 29 O 1.42894 * 110.71693 * 140.55640 * 27 26 17 30 30 H 1.09004 * 109.47621 * 83.98994 * 1 2 3 31 31 H 1.09001 * 109.47107 * 203.99072 * 1 2 3 32 32 H 1.09003 * 109.47050 * 323.98844 * 1 2 3 33 33 H 1.08994 * 109.75582 * 44.19555 * 10 9 5 34 34 H 1.09004 * 109.74893 * 283.45304 * 10 9 5 35 35 H 1.08998 * 109.41625 * 289.94489 * 11 10 9 36 36 H 1.09003 * 109.36050 * 170.11918 * 11 10 9 37 37 H 1.09001 * 109.37912 * 48.44884 * 12 11 10 38 38 H 1.09000 * 109.38340 * 168.22297 * 12 11 10 39 39 H 1.08997 * 109.60366 * 43.39826 * 13 8 7 40 40 H 1.09004 * 109.74887 * 282.77320 * 13 8 7 41 41 H 1.09000 * 110.36606 * 273.92204 * 16 14 2 42 42 H 1.09004 * 110.36461 * 36.13562 * 16 14 2 43 43 H 0.96999 * 119.99836 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.88171 * 120.47540 * 26 17 16 45 45 H 1.09001 * 109.87719 * 241.49187 * 26 17 16 46 46 H 0.96695 * 114.00296 * 66.48209 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3527 1.1684 -0.0688 5 6 1.4037 2.4434 0.0836 6 8 0.0645 2.6196 0.0251 7 7 -0.2360 3.7923 0.1237 8 6 0.8060 4.5420 0.2586 9 6 1.9291 3.6805 0.2341 10 6 3.3512 4.1456 0.3552 11 6 3.3793 5.6593 0.0976 12 6 2.3209 6.3516 0.9588 13 6 0.9192 6.0329 0.4214 14 6 2.1975 -1.2687 -0.0006 15 1 3.2729 -1.0964 -0.0437 16 6 1.8217 -2.1274 1.2328 17 7 2.0992 -3.5164 0.8242 18 6 2.3685 -4.5586 1.6707 19 1 2.4737 -4.3801 2.7306 20 6 2.5063 -5.8446 1.1664 21 7 2.4845 -6.0473 -0.1339 22 14 2.7226 -7.2872 2.3333 23 1 1.4020 -7.9131 2.5966 24 1 3.6313 -8.2883 1.7193 25 1 3.3064 -6.8067 3.6113 26 6 2.0381 -3.5977 -0.6425 27 6 1.7320 -2.1791 -1.1676 28 1 0.6643 -2.0572 -1.3495 29 8 2.4825 -1.9057 -2.3524 30 1 -0.3634 0.1076 -1.0220 31 1 -0.3633 -0.9389 0.4178 32 1 -0.3633 0.8313 0.6042 33 1 3.9699 3.6349 -0.3825 34 1 3.7233 3.9356 1.3580 35 1 3.1723 5.8517 -0.9551 36 1 4.3648 6.0506 0.3504 37 1 2.4034 5.9983 1.9867 38 1 2.4818 7.4293 0.9329 39 1 0.1661 6.3819 1.1278 40 1 0.7747 6.5207 -0.5427 41 1 2.4389 -1.8531 2.0883 42 1 0.7655 -2.0046 1.4729 43 1 2.5804 -6.9460 -0.4863 44 1 2.9956 -3.9396 -1.0351 45 1 1.2474 -4.2852 -0.9430 46 1 2.2303 -2.4486 -3.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047457884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:54 Heat of formation + Delta-G solvation = 10.928540 kcal Electronic energy + Delta-G solvation = -29842.184168 eV Core-core repulsion = 25736.204331 eV Total energy + Delta-G solvation = -4105.979837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.12235 -39.96764 -38.17231 -37.78964 -35.32487 -34.86590 -33.13227 -32.57551 -31.90728 -30.16308 -28.59194 -27.43757 -26.85579 -25.36823 -24.56991 -23.42509 -23.09280 -20.51854 -20.41559 -20.17637 -19.27609 -17.91294 -17.65088 -17.14557 -16.86659 -16.11108 -15.99314 -15.28343 -15.11098 -14.90592 -14.55930 -14.26434 -14.11156 -14.03671 -13.59370 -13.18327 -13.05655 -13.00039 -12.74729 -12.70084 -12.35551 -12.13680 -11.99823 -11.95281 -11.51981 -11.32237 -11.28401 -11.26598 -10.89805 -10.84406 -10.81276 -10.24756 -10.13738 -10.08587 -9.98924 -9.84867 -9.60846 -9.34564 -8.74995 -8.48287 -6.95669 -5.80671 -3.15643 0.74044 1.88115 2.49014 2.97352 3.11374 3.36677 3.42169 3.44206 3.64654 4.14488 4.41393 4.44546 4.49189 4.57313 4.67427 4.72876 4.91276 5.08425 5.10998 5.15389 5.19274 5.23985 5.39722 5.42482 5.48124 5.49313 5.59612 5.61411 5.62071 5.67998 5.76341 5.78802 5.86213 5.93529 5.97811 6.00650 6.07627 6.39635 6.49279 6.75193 7.29972 7.33367 7.43913 7.70352 7.84611 8.05668 8.13539 8.15577 9.10229 9.70393 10.33225 11.30960 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.002612 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.551289 B =10716.427549 C =10801.193920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.585 5.585 3 C 0.602 3.398 4 O -0.508 6.508 5 C -0.069 4.069 6 O 0.101 5.899 7 N -0.341 5.341 8 C 0.017 3.983 9 C -0.125 4.125 10 C -0.051 4.051 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.040 4.040 14 C 0.133 3.867 15 H 0.118 0.882 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.152 3.848 27 C 0.066 3.934 28 H 0.059 0.941 29 O -0.561 6.561 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.029 0.971 43 H 0.254 0.746 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 22.749 -1.212 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.316 5.316 3 C 0.387 3.613 4 O -0.384 6.384 5 C -0.133 4.133 6 O 0.033 5.967 7 N -0.045 5.045 8 C -0.144 4.144 9 C -0.129 4.129 10 C -0.088 4.088 11 C -0.159 4.159 12 C -0.157 4.157 13 C -0.078 4.078 14 C 0.030 3.970 15 H 0.136 0.864 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.026 3.974 27 C 0.006 3.994 28 H 0.076 0.924 29 O -0.366 6.366 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.188 23.146 -0.925 23.540 hybrid contribution 0.267 -1.314 0.167 1.351 sum -3.921 21.832 -0.759 22.194 Atomic orbital electron populations 1.22080 0.78882 1.04179 1.02575 1.47644 1.07463 1.05513 1.70943 1.16573 0.86076 0.80838 0.77794 1.90852 1.11891 1.85496 1.50141 1.23492 0.83898 0.96940 1.08994 1.85420 1.22276 1.20654 1.68334 1.73396 1.24316 0.90075 1.16721 1.23313 0.88198 0.99323 1.03529 1.21096 0.98803 0.90573 1.02465 1.20134 0.89323 0.95456 1.03876 1.21676 0.99467 0.94241 1.00485 1.21629 0.93011 1.00964 1.00093 1.20078 0.98808 0.86108 1.02825 1.22535 0.98356 0.80443 0.95716 0.86364 1.21792 0.98116 0.85655 0.94044 1.44234 1.83277 1.03131 1.01964 1.19078 1.42122 0.85138 0.89625 0.90081 1.24840 1.01715 0.97452 0.96178 1.69942 1.56214 1.20549 1.10070 0.86054 0.77497 0.82246 0.79699 1.21530 1.21665 1.20517 1.21862 1.01833 0.89553 0.84113 1.23542 0.93668 0.97283 0.84905 0.92361 1.86485 1.63988 1.64862 1.21228 0.91950 0.89300 0.90309 0.88662 0.89454 0.91425 0.90575 0.91203 0.90461 0.89520 0.89352 0.93187 0.95401 0.93587 0.92413 0.92920 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.30 59.85 0.50 1.33 16 2 N -0.58 -9.30 2.91 -172.71 -0.50 -9.80 16 3 C 0.60 9.86 7.67 -12.48 -0.10 9.76 16 4 O -0.51 -9.60 15.27 5.29 0.08 -9.52 16 5 C -0.07 -0.97 6.86 -36.87 -0.25 -1.23 16 6 O 0.10 1.34 8.07 13.80 0.11 1.45 16 7 N -0.34 -4.45 12.03 33.09 0.40 -4.06 16 8 C 0.02 0.20 7.21 -82.63 -0.60 -0.40 16 9 C -0.12 -1.55 6.02 -104.70 -0.63 -2.18 16 10 C -0.05 -0.52 5.66 -27.87 -0.16 -0.68 16 11 C -0.12 -0.88 5.87 -26.43 -0.16 -1.03 16 12 C -0.12 -0.75 5.85 -26.48 -0.15 -0.90 16 13 C -0.04 -0.31 6.30 -27.78 -0.17 -0.48 16 14 C 0.13 2.50 3.17 -65.78 -0.21 2.29 16 15 H 0.12 2.53 7.01 -51.93 -0.36 2.17 16 16 C 0.13 2.66 6.79 -2.53 -0.02 2.65 16 17 N -0.60 -14.89 3.39 -170.06 -0.58 -15.47 16 18 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 21 N -0.92 -26.34 10.34 55.49 0.57 -25.76 16 22 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.15 3.56 5.16 -3.06 -0.02 3.55 16 27 C 0.07 1.25 3.89 -24.89 -0.10 1.15 16 28 H 0.06 0.99 7.07 -51.93 -0.37 0.62 16 29 O -0.56 -10.21 13.39 -35.23 -0.47 -10.68 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.11 6.33 -51.93 -0.33 0.78 16 32 H 0.08 0.91 5.45 -51.93 -0.28 0.63 16 33 H 0.10 1.10 7.67 -51.93 -0.40 0.71 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.53 6.34 -51.93 -0.33 0.20 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.53 7.45 -51.93 -0.39 1.15 16 45 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 46 H 0.37 5.22 9.12 45.56 0.42 5.64 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -32.62 363.91 -8.01 -40.63 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.77 Total: 3.92 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.31 Total: 7.11 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.11 Total: -55.08 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.28 Total: -18.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.62 -8.01 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047457884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.560 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds