Wall clock time and date at job start Tue Mar 31 2020 18:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99641 * 2 1 4 4 O 1.21584 * 119.99758 * 183.74673 * 3 2 1 5 5 C 1.47509 * 120.00487 * 3.75267 * 3 2 1 6 6 O 1.35196 * 127.15316 * 352.53379 * 5 3 2 7 7 N 1.21469 * 111.55649 * 179.97438 * 6 5 3 8 8 C 1.29071 * 111.68507 * 359.90238 * 7 6 5 9 9 C 1.35247 * 127.15783 * 172.56382 * 5 3 2 10 10 C 1.50108 * 131.33464 * 0.21336 * 9 5 3 11 11 C 1.53573 * 108.01449 * 163.82620 * 10 9 5 12 12 C 1.53004 * 109.80880 * 50.05030 * 11 10 9 13 13 C 1.50401 * 130.37935 * 180.42519 * 8 7 6 14 14 C 1.46495 * 120.00232 * 180.02562 * 2 1 3 15 15 H 1.08992 * 110.88730 * 177.56700 * 14 2 1 16 16 C 1.54914 * 111.00356 * 301.45179 * 14 2 1 17 17 N 1.47425 * 104.83178 * 155.08238 * 16 14 2 18 18 C 1.36938 * 125.64719 * 155.90766 * 17 16 14 19 19 H 1.07997 * 119.99895 * 354.76176 * 18 17 16 20 20 C 1.38814 * 119.99936 * 174.75597 * 18 17 16 21 21 N 1.31623 * 119.99786 * 5.42699 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 185.41976 * 20 18 17 23 23 H 1.48503 * 109.46987 * 95.00056 * 22 20 18 24 24 H 1.48493 * 109.46960 * 215.00134 * 22 20 18 25 25 H 1.48498 * 109.46795 * 335.00366 * 22 20 18 26 26 C 1.47029 * 108.70437 * 335.87087 * 17 16 14 27 27 C 1.54326 * 107.26977 * 1.05760 * 26 17 16 28 28 H 1.08993 * 110.72161 * 263.83017 * 27 26 17 29 29 O 1.42894 * 110.71693 * 140.55640 * 27 26 17 30 30 H 1.09004 * 109.47621 * 83.98994 * 1 2 3 31 31 H 1.09001 * 109.47107 * 203.99072 * 1 2 3 32 32 H 1.09003 * 109.47050 * 323.98844 * 1 2 3 33 33 H 1.08994 * 109.75582 * 44.19555 * 10 9 5 34 34 H 1.09004 * 109.74893 * 283.45304 * 10 9 5 35 35 H 1.08998 * 109.41625 * 289.94489 * 11 10 9 36 36 H 1.09003 * 109.36050 * 170.11918 * 11 10 9 37 37 H 1.09001 * 109.37912 * 48.44884 * 12 11 10 38 38 H 1.09000 * 109.38340 * 168.22297 * 12 11 10 39 39 H 1.08997 * 109.60366 * 43.39826 * 13 8 7 40 40 H 1.09004 * 109.74887 * 282.77320 * 13 8 7 41 41 H 1.09000 * 110.36606 * 273.92204 * 16 14 2 42 42 H 1.09004 * 110.36461 * 36.13562 * 16 14 2 43 43 H 0.96999 * 119.99836 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.88171 * 120.47540 * 26 17 16 45 45 H 1.09001 * 109.87719 * 241.49187 * 26 17 16 46 46 H 0.96695 * 114.00296 * 66.48209 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3527 1.1684 -0.0688 5 6 1.4037 2.4434 0.0836 6 8 0.0645 2.6196 0.0251 7 7 -0.2360 3.7923 0.1237 8 6 0.8060 4.5420 0.2586 9 6 1.9291 3.6805 0.2341 10 6 3.3512 4.1456 0.3552 11 6 3.3793 5.6593 0.0976 12 6 2.3209 6.3516 0.9588 13 6 0.9192 6.0329 0.4214 14 6 2.1975 -1.2687 -0.0006 15 1 3.2729 -1.0964 -0.0437 16 6 1.8217 -2.1274 1.2328 17 7 2.0992 -3.5164 0.8242 18 6 2.3685 -4.5586 1.6707 19 1 2.4737 -4.3801 2.7306 20 6 2.5063 -5.8446 1.1664 21 7 2.4845 -6.0473 -0.1339 22 14 2.7226 -7.2872 2.3333 23 1 1.4020 -7.9131 2.5966 24 1 3.6313 -8.2883 1.7193 25 1 3.3064 -6.8067 3.6113 26 6 2.0381 -3.5977 -0.6425 27 6 1.7320 -2.1791 -1.1676 28 1 0.6643 -2.0572 -1.3495 29 8 2.4825 -1.9057 -2.3524 30 1 -0.3634 0.1076 -1.0220 31 1 -0.3633 -0.9389 0.4178 32 1 -0.3633 0.8313 0.6042 33 1 3.9699 3.6349 -0.3825 34 1 3.7233 3.9356 1.3580 35 1 3.1723 5.8517 -0.9551 36 1 4.3648 6.0506 0.3504 37 1 2.4034 5.9983 1.9867 38 1 2.4818 7.4293 0.9329 39 1 0.1661 6.3819 1.1278 40 1 0.7747 6.5207 -0.5427 41 1 2.4389 -1.8531 2.0883 42 1 0.7655 -2.0046 1.4729 43 1 2.5804 -6.9460 -0.4863 44 1 2.9956 -3.9396 -1.0351 45 1 1.2474 -4.2852 -0.9430 46 1 2.2303 -2.4486 -3.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047457884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:53 Heat of formation + Delta-G solvation = -12.066525 kcal Electronic energy + Delta-G solvation = -29843.181309 eV Core-core repulsion = 25736.204331 eV Total energy + Delta-G solvation = -4106.976978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.08232 -41.34461 -39.53407 -38.72412 -36.76887 -36.48513 -34.22362 -33.67511 -33.38112 -31.13067 -30.23363 -29.06138 -28.07353 -26.65687 -25.89768 -24.36099 -24.21897 -22.32126 -21.68499 -20.97457 -20.51490 -19.05559 -18.88974 -18.85276 -18.25095 -17.60367 -17.04863 -16.68531 -16.33840 -16.05684 -15.80041 -15.73907 -15.20096 -14.90509 -14.77712 -14.54492 -14.35984 -14.27481 -14.07787 -13.77932 -13.70591 -13.39964 -13.17834 -13.12889 -13.02503 -12.84980 -12.74391 -12.66744 -12.07023 -11.91577 -11.89474 -11.87555 -11.58937 -11.54883 -11.40908 -10.97333 -10.94930 -10.76220 -10.62785 -9.86486 -8.96585 -7.89239 -5.26630 -0.34297 0.96650 1.30484 1.47577 1.48723 1.57874 1.74839 1.95337 2.47662 2.83899 3.07243 3.23360 3.33022 3.52431 3.61748 3.77101 3.79942 3.90233 3.95188 4.00765 4.06657 4.19547 4.28712 4.35077 4.39127 4.41674 4.48489 4.51991 4.56166 4.73584 4.84919 4.87933 4.90025 4.97604 4.97690 5.13881 5.14485 5.28909 5.31421 5.39947 5.40558 5.41201 5.65289 6.04331 6.12123 6.66736 6.83169 6.97860 7.03385 7.68092 8.30757 9.20850 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.002612 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.551289 B =10716.427549 C =10801.193920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.583 5.583 3 C 0.602 3.398 4 O -0.542 6.542 5 C -0.088 4.088 6 O 0.096 5.904 7 N -0.354 5.354 8 C 0.024 3.976 9 C -0.122 4.122 10 C -0.055 4.055 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.043 4.043 14 C 0.146 3.854 15 H 0.088 0.912 16 C 0.133 3.867 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.086 0.914 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.164 3.836 27 C 0.085 3.915 28 H 0.088 0.912 29 O -0.571 6.571 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.249 0.751 44 H 0.017 0.983 45 H 0.030 0.970 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 25.333 -0.552 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.314 5.314 3 C 0.389 3.611 4 O -0.420 6.420 5 C -0.152 4.152 6 O 0.030 5.970 7 N -0.060 5.060 8 C -0.137 4.137 9 C -0.127 4.127 10 C -0.092 4.092 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.080 4.080 14 C 0.042 3.958 15 H 0.107 0.893 16 C 0.007 3.993 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.104 0.896 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.038 3.962 27 C 0.025 3.975 28 H 0.106 0.894 29 O -0.378 6.378 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.048 0.952 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.328 25.751 -0.266 26.298 hybrid contribution 0.623 -2.026 -0.048 2.120 sum -4.705 23.725 -0.314 24.189 Atomic orbital electron populations 1.22288 0.76606 1.04983 1.03958 1.47609 1.08659 1.04298 1.70789 1.16804 0.85835 0.81531 0.76970 1.90829 1.13419 1.86147 1.51627 1.23119 0.84577 0.96330 1.11143 1.85395 1.21606 1.21020 1.68970 1.73380 1.24966 0.90138 1.17504 1.23931 0.87049 1.00980 1.01709 1.21509 1.00122 0.90270 1.00791 1.20248 0.87828 0.97825 1.03333 1.21690 1.01049 0.91701 1.00958 1.21650 0.91605 1.02560 0.99425 1.20354 1.00119 0.83356 1.04202 1.22054 0.97122 0.81646 0.95024 0.89337 1.21898 0.99218 0.83690 0.94529 1.44490 1.83300 1.04517 1.02448 1.19455 1.41533 0.86122 0.90315 0.89634 1.25675 1.02108 0.99968 0.97706 1.70146 1.57340 1.20553 1.11626 0.85030 0.77281 0.78762 0.78063 1.21036 1.22236 1.19327 1.21607 0.98813 0.92047 0.83771 1.23299 0.95130 0.94053 0.85039 0.89449 1.86453 1.64407 1.65250 1.21700 0.90404 0.88818 0.89011 0.90431 0.89379 0.91203 0.88786 0.91482 0.87570 0.88151 0.87726 0.93554 0.92965 0.94162 0.96521 0.95219 0.75641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.48 8.30 127.77 1.06 2.54 16 2 N -0.58 -18.22 2.91 -818.60 -2.38 -20.60 16 3 C 0.60 19.76 7.67 86.69 0.66 20.43 16 4 O -0.54 -21.06 15.27 -3.98 -0.06 -21.12 16 5 C -0.09 -2.42 6.86 24.03 0.16 -2.26 16 6 O 0.10 2.43 8.07 59.41 0.48 2.91 16 7 N -0.35 -8.63 12.03 -51.06 -0.61 -9.24 16 8 C 0.02 0.50 7.21 43.69 0.31 0.82 16 9 C -0.12 -2.91 6.02 -19.92 -0.12 -3.03 16 10 C -0.06 -1.09 5.66 29.86 0.17 -0.92 16 11 C -0.12 -1.39 5.87 30.79 0.18 -1.21 16 12 C -0.11 -1.04 5.85 30.75 0.18 -0.86 16 13 C -0.04 -0.51 6.30 29.91 0.19 -0.32 16 14 C 0.15 5.54 3.17 46.39 0.15 5.69 16 15 H 0.09 3.93 7.01 -2.39 -0.02 3.91 16 16 C 0.13 5.40 6.79 86.86 0.59 5.99 16 17 N -0.62 -31.43 3.39 -691.96 -2.35 -33.78 16 18 C -0.25 -13.58 10.27 84.03 0.86 -12.72 16 19 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.06 -3.43 5.48 84.86 0.47 -2.96 16 21 N -0.95 -55.89 10.34 21.65 0.22 -55.67 16 22 Si 0.98 45.12 29.56 68.60 2.03 47.14 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.16 7.91 5.16 86.73 0.45 8.36 16 27 C 0.09 3.20 3.89 31.79 0.12 3.32 16 28 H 0.09 2.81 7.07 -2.39 -0.02 2.79 16 29 O -0.57 -20.71 13.39 -148.98 -1.99 -22.70 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 2.12 6.33 -2.39 -0.02 2.11 16 32 H 0.09 1.96 5.45 -2.39 -0.01 1.95 16 33 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 0.82 8.11 -2.39 -0.02 0.80 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 38 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.91 6.34 -2.39 -0.02 1.89 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.02 0.93 7.45 -2.39 -0.02 0.91 16 45 H 0.03 1.55 7.36 -2.39 -0.02 1.54 16 46 H 0.39 10.79 9.12 -74.06 -0.68 10.11 16 Total: -1.00 -72.70 363.91 1.12 -71.59 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.35 Total: 18.60 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 5.44 Total: 22.87 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.12 Total: -119.30 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.58 Total: -40.91 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.70 1.12 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047457884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.521 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds