Wall clock time and date at job start Tue Mar 31 2020 18:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35916 * 116.99992 * 2 1 4 4 C 1.39133 * 120.47219 * 180.02562 * 3 2 1 5 5 C 1.38538 * 118.37197 * 180.02562 * 4 3 2 6 6 C 1.38250 * 119.22203 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.55458 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.46883 * 124.99956 * 7 6 5 9 9 O 1.21280 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99578 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00467 * 0.02562 * 10 8 7 12 12 C 1.46504 * 119.99722 * 180.02562 * 10 8 7 13 13 H 1.09006 * 110.91222 * 357.55504 * 12 10 8 14 14 C 1.54906 * 111.00297 * 121.45420 * 12 10 8 15 15 N 1.47430 * 104.82878 * 155.08657 * 14 12 10 16 16 C 1.36932 * 125.64879 * 155.89684 * 15 14 12 17 17 H 1.08008 * 120.00035 * 353.92642 * 16 15 14 18 18 C 1.38816 * 120.00432 * 173.92966 * 16 15 14 19 19 N 1.31620 * 119.99630 * 6.83687 * 18 16 15 20 20 Si 1.86798 * 120.00071 * 186.84234 * 18 16 15 21 21 H 1.48501 * 109.47283 * 94.98479 * 20 18 16 22 22 H 1.48503 * 109.46879 * 214.98026 * 20 18 16 23 23 H 1.48498 * 109.47381 * 334.98199 * 20 18 16 24 24 C 1.47023 * 108.70264 * 335.87265 * 15 14 12 25 25 C 1.54316 * 107.27193 * 1.05760 * 24 15 14 26 26 H 1.08995 * 110.72344 * 263.65459 * 25 24 15 27 27 O 1.42903 * 110.72084 * 140.55903 * 25 24 15 28 28 N 1.31842 * 120.88696 * 0.25540 * 6 5 4 29 29 C 1.31841 * 121.77816 * 359.46949 * 28 6 5 30 30 H 1.09000 * 109.46810 * 299.99497 * 1 2 3 31 31 H 1.08997 * 109.47504 * 60.00185 * 1 2 3 32 32 H 1.09003 * 109.46942 * 180.02562 * 1 2 3 33 33 H 1.08007 * 120.81649 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.38525 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47385 * 5.00322 * 7 6 5 36 36 H 1.08998 * 109.47480 * 245.00001 * 7 6 5 37 37 H 1.08993 * 109.47308 * 269.99764 * 11 10 8 38 38 H 1.09000 * 109.47169 * 29.99893 * 11 10 8 39 39 H 1.08997 * 109.47251 * 149.99475 * 11 10 8 40 40 H 1.08994 * 110.36732 * 36.25011 * 14 12 10 41 41 H 1.08995 * 110.37062 * 273.91938 * 14 12 10 42 42 H 0.97001 * 119.99594 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.88376 * 120.48321 * 24 15 14 44 44 H 1.09005 * 109.87936 * 241.48789 * 24 15 14 45 45 H 0.96700 * 113.99778 * 61.45081 * 27 25 24 46 46 H 1.08006 * 119.66012 * 180.26963 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5519 0.0000 6 6 3.2079 3.6721 0.0016 7 6 3.8344 5.0426 0.0029 8 6 3.3015 5.8396 -1.1600 9 8 2.4922 5.3436 -1.9150 10 7 3.7235 7.1039 -1.3602 11 6 4.7006 7.7032 -0.4479 12 6 3.2050 7.8788 -2.4902 13 1 2.5240 7.2786 -3.0938 14 6 2.5168 9.1783 -2.0031 15 7 2.6027 10.1028 -3.1483 16 6 1.7678 11.1625 -3.3829 17 1 0.9049 11.3199 -2.7527 18 6 2.0303 12.0344 -4.4307 19 7 3.0005 11.7696 -5.2797 20 14 1.0066 13.5834 -4.6355 21 1 1.6976 14.7235 -3.9813 22 1 0.8325 13.8740 -6.0814 23 1 -0.3239 13.3843 -4.0069 24 6 3.7338 9.6990 -3.9964 25 6 4.3627 8.4445 -3.3545 26 1 5.2152 8.7160 -2.7319 27 8 4.7510 7.5039 -4.3578 28 7 1.8945 3.5574 0.0077 29 6 1.3002 2.3805 0.0020 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0433 0.4029 -0.0014 34 1 5.0932 2.6551 -0.0008 35 1 4.9165 4.9476 -0.0874 36 1 3.5909 5.5527 0.9349 37 1 4.1776 8.2008 0.3687 38 1 5.3465 6.9236 -0.0441 39 1 5.3046 8.4310 -0.9895 40 1 3.0465 9.5888 -1.1436 41 1 1.4746 8.9838 -1.7501 42 1 3.1842 12.3790 -6.0117 43 1 3.3792 9.4639 -4.9999 44 1 4.4685 10.5029 -4.0419 45 1 5.4179 7.8380 -4.9731 46 1 0.2215 2.3264 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047502834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:16 Heat of formation + Delta-G solvation = -68.712751 kcal Electronic energy + Delta-G solvation = -28967.650819 eV Core-core repulsion = 24858.217477 eV Total energy + Delta-G solvation = -4109.433343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78464 -41.03724 -39.57216 -38.86458 -36.70937 -36.23655 -34.01179 -33.37939 -33.24526 -30.56096 -29.36753 -28.75744 -28.05740 -27.55935 -26.21886 -24.41836 -23.43346 -22.33926 -21.81972 -20.12020 -19.11962 -19.01612 -18.68566 -18.10383 -17.64547 -17.39625 -16.94182 -16.79261 -16.42599 -16.32439 -15.79222 -15.46388 -15.14525 -15.01745 -14.74044 -14.52449 -14.30433 -14.10833 -13.95099 -13.87601 -13.65951 -13.30821 -13.17221 -13.10370 -12.92246 -12.83726 -12.75333 -12.74150 -12.62992 -12.30456 -12.06925 -11.89943 -11.54617 -10.99879 -10.80474 -10.75738 -10.63016 -10.31561 -9.61154 -9.34417 -8.96082 -7.90827 -5.27689 0.12274 0.33168 1.45310 1.47093 1.56273 1.72717 1.95131 2.24041 2.47088 2.80224 3.13224 3.30800 3.32991 3.58449 3.66822 3.72240 3.78420 3.87572 4.01949 4.08735 4.11322 4.30977 4.33813 4.35877 4.40242 4.46594 4.49709 4.55316 4.58916 4.68054 4.73537 4.76192 4.82934 4.96162 5.02653 5.08800 5.12937 5.37704 5.40608 5.52334 5.57902 5.63345 6.11721 6.20877 6.49427 6.84495 7.02497 7.06770 7.28683 7.67486 8.31067 9.19478 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.002368 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.795524 B =11822.274193 C =12384.961745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.116 4.116 5 C -0.116 4.116 6 C 0.081 3.919 7 C -0.073 4.073 8 C 0.511 3.489 9 O -0.579 6.579 10 N -0.602 5.602 11 C 0.063 3.937 12 C 0.148 3.852 13 H 0.068 0.932 14 C 0.135 3.865 15 N -0.622 5.622 16 C -0.248 4.248 17 H 0.082 0.918 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.162 3.838 25 C 0.085 3.915 26 H 0.093 0.907 27 O -0.572 6.572 28 N -0.462 5.462 29 C 0.004 3.996 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.152 0.848 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.249 0.751 43 H 0.011 0.989 44 H 0.030 0.970 45 H 0.392 0.608 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -20.576 16.250 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.058 4.058 7 C -0.113 4.113 8 C 0.300 3.700 9 O -0.458 6.458 10 N -0.335 5.335 11 C -0.078 4.078 12 C 0.042 3.958 13 H 0.087 0.913 14 C 0.009 3.991 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.100 0.900 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.810 3.190 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.195 1.195 24 C 0.036 3.964 25 C 0.024 3.976 26 H 0.111 0.889 27 O -0.380 6.380 28 N -0.171 5.171 29 C -0.155 4.155 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.048 0.952 45 H 0.242 0.758 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.562 -20.519 16.054 26.640 hybrid contribution -0.400 0.865 -1.201 1.533 sum 5.162 -19.654 14.853 25.170 Atomic orbital electron populations 1.23376 0.76385 1.05975 1.02119 1.86040 1.23416 1.25632 1.88506 1.20262 0.94086 0.85713 0.98177 1.21273 0.91438 0.99905 1.01556 1.22179 1.02932 0.90593 0.97843 1.20921 0.89108 0.95939 0.99816 1.20691 1.02923 0.90189 0.97477 1.21192 0.80843 0.81310 0.86610 1.90705 1.35491 1.70587 1.49016 1.47777 1.44371 1.13097 1.28241 1.22210 0.91810 1.00752 0.93042 1.21779 0.94677 0.91950 0.87434 0.91346 1.21861 0.98102 0.88166 0.90991 1.44528 1.33836 1.31866 1.24732 1.19449 1.04825 1.01037 1.12318 0.89971 1.25698 1.00299 1.02112 0.97417 1.70156 1.34490 1.37927 1.17074 0.85016 0.78203 0.79303 0.76527 1.20738 1.22142 1.19505 1.21629 0.89335 0.92587 0.92812 1.23356 0.96402 0.88457 0.89367 0.88925 1.86464 1.64086 1.41767 1.45648 1.67243 1.13184 1.27530 1.09173 1.23045 1.01170 0.87190 1.04058 0.91522 0.92505 0.85525 0.81524 0.80108 0.83010 0.84913 0.90893 0.86808 0.90760 0.92931 0.94793 0.94125 0.97057 0.95193 0.75826 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 113.37 1.11 1.30 16 2 O -0.32 -6.13 10.51 -92.61 -0.97 -7.10 16 3 C 0.07 1.41 6.71 22.60 0.15 1.57 16 4 C -0.12 -2.07 10.13 22.56 0.23 -1.84 16 5 C -0.12 -1.98 9.70 22.34 0.22 -1.76 16 6 C 0.08 1.92 5.76 42.56 0.24 2.16 16 7 C -0.07 -1.38 4.65 29.10 0.14 -1.25 16 8 C 0.51 15.98 7.61 87.66 0.67 16.65 16 9 O -0.58 -24.94 14.72 -3.03 -0.04 -24.98 16 10 N -0.60 -17.83 2.91 -814.82 -2.37 -20.20 16 11 C 0.06 1.13 9.13 127.77 1.17 2.30 16 12 C 0.15 5.86 3.18 46.38 0.15 6.01 16 13 H 0.07 3.36 7.02 -2.38 -0.02 3.34 16 14 C 0.14 5.80 6.83 86.85 0.59 6.39 16 15 N -0.62 -32.81 3.39 -692.00 -2.35 -35.15 16 16 C -0.25 -14.16 10.26 84.04 0.86 -13.30 16 17 H 0.08 4.53 7.84 -2.91 -0.02 4.50 16 18 C -0.06 -3.55 5.48 84.86 0.47 -3.09 16 19 N -0.95 -56.92 10.36 21.65 0.22 -56.70 16 20 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.16 8.08 5.15 86.73 0.45 8.53 16 25 C 0.08 3.24 3.87 31.78 0.12 3.36 16 26 H 0.09 2.94 6.03 -2.39 -0.01 2.93 16 27 O -0.57 -21.33 13.39 -148.98 -2.00 -23.33 16 28 N -0.46 -13.72 9.23 -183.50 -1.69 -15.41 16 29 C 0.00 0.09 10.22 84.80 0.87 0.96 16 30 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 31 H 0.06 0.72 7.68 -2.39 -0.02 0.70 16 32 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.18 1.49 7.95 -2.91 -0.02 1.47 16 35 H 0.15 1.44 7.13 -2.39 -0.02 1.42 16 36 H 0.13 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 38 H 0.11 1.05 6.44 -2.39 -0.02 1.03 16 39 H 0.07 1.40 6.02 -2.39 -0.01 1.38 16 40 H 0.05 2.00 7.22 -2.39 -0.02 1.98 16 41 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.01 0.65 7.46 -2.39 -0.02 0.63 16 44 H 0.03 1.59 7.36 -2.38 -0.02 1.58 16 45 H 0.39 11.16 9.11 -74.06 -0.67 10.49 16 46 H 0.16 3.49 6.32 -2.91 -0.02 3.47 16 Total: -1.00 -87.45 373.98 0.60 -86.85 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.34 Total: 20.00 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 7.43 Total: 27.98 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.19 Total: -127.47 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -3.01 Total: -55.42 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -87.45 0.60 -86.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047502834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.140 kcal (2) G-P(sol) polarization free energy of solvation -87.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds