Wall clock time and date at job start Tue Mar 31 2020 18:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35911 * 117.00063 * 2 1 4 4 C 1.39128 * 120.47391 * 0.02562 * 3 2 1 5 5 C 1.38543 * 118.37622 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.21769 * 359.97438 * 5 4 3 7 7 N 1.31844 * 120.88718 * 359.97438 * 6 5 4 8 8 C 1.31835 * 121.78262 * 0.02785 * 7 6 5 9 9 C 1.50701 * 119.65786 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47245 * 89.99656 * 9 8 7 11 11 O 1.21283 * 119.99889 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00125 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00099 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00004 * 179.97438 * 12 10 9 15 15 H 1.08997 * 110.63892 * 3.14629 * 14 12 10 16 16 C 1.54328 * 110.71730 * 126.47995 * 14 12 10 17 17 N 1.47019 * 107.26861 * 140.55641 * 16 14 12 18 18 C 1.36936 * 125.64887 * 181.02208 * 17 16 14 19 19 H 1.08005 * 119.99630 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00333 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99760 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00158 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47156 * 89.99806 * 22 20 18 24 24 H 1.48496 * 109.47234 * 209.99703 * 22 20 18 25 25 H 1.48497 * 109.47088 * 329.99778 * 22 20 18 26 26 C 1.47427 * 108.70393 * 1.05906 * 17 16 14 27 27 C 1.54907 * 104.82983 * 335.87088 * 26 17 16 28 28 H 1.08993 * 111.00460 * 278.93156 * 27 26 17 29 29 O 1.42909 * 111.00071 * 155.08665 * 27 26 17 30 30 H 1.08996 * 109.46909 * 300.00018 * 1 2 3 31 31 H 1.08997 * 109.46921 * 59.99774 * 1 2 3 32 32 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.81501 * 0.04263 * 4 3 2 34 34 H 1.07996 * 120.39076 * 180.25235 * 5 4 3 35 35 H 1.07996 * 119.55105 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46982 * 209.99084 * 9 8 7 37 37 H 1.08995 * 109.47259 * 329.99592 * 9 8 7 38 38 H 1.08999 * 109.46983 * 89.99862 * 13 12 10 39 39 H 1.09003 * 109.46876 * 209.99641 * 13 12 10 40 40 H 1.09003 * 109.46678 * 329.99379 * 13 12 10 41 41 H 1.09003 * 109.87881 * 259.97659 * 16 14 12 42 42 H 1.08998 * 109.88515 * 21.14149 * 16 14 12 43 43 H 0.97005 * 119.99788 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36696 * 217.02783 * 26 17 16 45 45 H 1.09006 * 110.45684 * 94.75804 * 26 17 16 46 46 H 0.96700 * 114.00102 * 67.79841 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3840 0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3543 3.5975 -0.0006 7 7 4.0335 2.4674 0.0000 8 6 3.4306 1.2950 0.0005 9 6 4.2543 0.0330 0.0005 10 6 4.5295 -0.3873 1.4213 11 8 4.0987 0.2727 2.3432 12 7 5.2533 -1.4971 1.6676 13 6 5.7732 -2.2947 0.5541 14 6 5.5213 -1.9054 3.0489 15 1 5.0206 -1.2384 3.7506 16 6 5.0905 -3.3694 3.2788 17 7 6.1084 -3.9944 4.1359 18 6 6.1065 -5.2974 4.5571 19 1 5.3080 -5.9603 4.2580 20 6 7.1307 -5.7662 5.3683 21 7 8.1040 -4.9584 5.7323 22 14 7.1284 -7.5439 5.9421 23 1 7.8591 -8.3825 4.9583 24 1 7.7960 -7.6378 7.2652 25 1 5.7282 -8.0244 6.0590 26 6 7.1312 -2.9857 4.4677 27 6 7.0478 -1.9452 3.3232 28 1 7.5940 -2.2869 2.4440 29 8 7.5240 -0.6690 3.7555 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2184 2.3518 0.0016 34 1 1.4234 4.5250 0.0045 35 1 3.8850 4.5381 -0.0014 36 1 3.7073 -0.7579 -0.5128 37 1 5.1979 0.2150 -0.5138 38 1 6.7629 -1.9311 0.2777 39 1 5.8414 -3.3397 0.8565 40 1 5.1020 -2.2067 -0.3003 41 1 4.1204 -3.3967 3.7750 42 1 5.0362 -3.8940 2.3249 43 1 8.8199 -5.2861 6.2989 44 1 8.1203 -3.4428 4.4937 45 1 6.9060 -2.5155 5.4251 46 1 8.4731 -0.6450 3.9392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047503901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:20 Heat of formation + Delta-G solvation = -38.423201 kcal Electronic energy + Delta-G solvation = -29582.760108 eV Core-core repulsion = 25474.640219 eV Total energy + Delta-G solvation = -4108.119889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00220 -39.66212 -38.31438 -37.67848 -35.12542 -34.66285 -33.29825 -31.95210 -31.51161 -29.13132 -28.07392 -27.64592 -27.10237 -26.41995 -24.35255 -23.06665 -22.75756 -20.43000 -20.37939 -18.75831 -18.27303 -17.38548 -17.29801 -17.07320 -16.41940 -16.37800 -15.93208 -15.53229 -15.20664 -14.75506 -14.57983 -14.15455 -13.99807 -13.73666 -13.56866 -13.28671 -13.16941 -12.90777 -12.73985 -12.46887 -12.20929 -12.14168 -11.89931 -11.69051 -11.68345 -11.55817 -11.41824 -11.16586 -10.91427 -10.81867 -10.17666 -9.97703 -9.90679 -9.72102 -9.67301 -9.56359 -9.17324 -8.71321 -8.49393 -8.23854 -6.91528 -5.71037 -3.14565 0.92786 1.11277 2.91882 2.96154 3.17308 3.37142 3.42407 3.44614 3.68314 4.13607 4.40551 4.43018 4.50166 4.69954 4.74596 4.84190 4.88016 4.90852 5.06766 5.20103 5.22710 5.23640 5.34343 5.39559 5.43683 5.56120 5.64825 5.71093 5.73511 5.81049 5.90074 5.91223 5.96829 6.15605 6.24066 6.25248 6.53282 6.66710 6.95957 7.01088 7.37937 7.53174 7.68260 7.75534 7.86397 8.20748 8.31641 8.48110 9.13914 9.74561 10.37541 11.32441 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.002725 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.551918 B =10274.481446 C =11040.040180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.063 3.937 7 N -0.437 5.437 8 C 0.130 3.870 9 C -0.084 4.084 10 C 0.526 3.474 11 O -0.534 6.534 12 N -0.602 5.602 13 C 0.070 3.930 14 C 0.138 3.862 15 H 0.110 0.890 16 C 0.130 3.870 17 N -0.599 5.599 18 C -0.224 4.224 19 H 0.080 0.920 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.917 3.083 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.129 3.871 27 C 0.065 3.935 28 H 0.059 0.941 29 O -0.562 6.562 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.111 0.889 45 H 0.024 0.976 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 13.033 -16.612 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.044 3.956 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.094 4.094 7 N -0.146 5.146 8 C -0.011 4.011 9 C -0.124 4.124 10 C 0.313 3.687 11 O -0.411 6.411 12 N -0.334 5.334 13 C -0.073 4.073 14 C 0.034 3.966 15 H 0.128 0.872 16 C 0.003 3.997 17 N -0.327 5.327 18 C -0.352 4.352 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.003 3.997 27 C 0.004 3.996 28 H 0.077 0.923 29 O -0.367 6.367 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.042 0.958 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.032 13.227 -16.064 23.552 hybrid contribution -0.629 -0.907 0.440 1.188 sum -11.661 12.320 -15.623 23.062 Atomic orbital electron populations 1.23111 0.78168 1.04417 1.01226 1.86117 1.21517 1.25882 1.88214 1.19834 0.93061 0.85224 0.97433 1.21640 1.00655 0.92138 1.04810 1.21958 0.95767 0.98151 0.99697 1.22595 0.91421 0.96306 0.99077 1.67453 1.40012 0.97503 1.09650 1.19975 0.87740 0.93442 0.99913 1.20482 1.01482 0.94248 0.96208 1.20168 0.77839 0.80134 0.90540 1.90690 1.51167 1.52958 1.46241 1.47723 1.53014 1.25613 1.07078 1.21871 0.99008 0.97500 0.88934 1.22108 0.95326 0.97025 0.82122 0.87223 1.21557 0.93392 0.89745 0.94977 1.44278 1.23221 1.07772 1.57398 1.19083 1.06706 0.84556 1.24847 0.90214 1.24811 0.97337 0.98477 0.99932 1.69764 1.13259 1.33647 1.40377 0.86030 0.77494 0.83795 0.77912 1.21526 1.21603 1.20676 1.22553 0.97525 0.87356 0.92274 1.23718 0.93506 0.84301 0.98070 0.92303 1.86471 1.28343 1.32000 1.89842 0.92503 0.92681 0.87815 0.84371 0.84578 0.82460 0.87039 0.87112 0.92577 0.89774 0.91177 0.95128 0.94741 0.93595 0.87138 0.95805 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.55 -19.46 -0.19 -3.78 16 3 C 0.09 1.17 6.67 -39.08 -0.26 0.91 16 4 C -0.17 -1.68 9.14 -39.14 -0.36 -2.04 16 5 C -0.14 -1.27 10.11 -39.46 -0.40 -1.67 16 6 C 0.06 0.70 11.18 -17.54 -0.20 0.51 16 7 N -0.44 -6.26 10.27 -9.35 -0.10 -6.36 16 8 C 0.13 1.84 5.29 -82.41 -0.44 1.41 16 9 C -0.08 -1.11 4.33 -29.03 -0.13 -1.23 16 10 C 0.53 9.17 7.67 -10.99 -0.08 9.09 16 11 O -0.53 -11.56 15.41 5.55 0.09 -11.47 16 12 N -0.60 -10.13 2.89 -171.83 -0.50 -10.62 16 13 C 0.07 0.89 9.10 59.85 0.54 1.43 16 14 C 0.14 2.79 3.10 -66.09 -0.20 2.59 16 15 H 0.11 2.53 7.00 -51.93 -0.36 2.17 16 16 C 0.13 2.80 6.80 -3.06 -0.02 2.78 16 17 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 18 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 22 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.13 3.16 5.62 -2.53 -0.01 3.15 16 27 C 0.06 1.32 4.00 -24.59 -0.10 1.23 16 28 H 0.06 1.13 7.29 -51.93 -0.38 0.76 16 29 O -0.56 -11.09 13.47 -35.23 -0.47 -11.56 16 30 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 31 H 0.05 0.30 7.70 -51.93 -0.40 -0.10 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.99 6.45 -52.49 -0.34 0.65 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.21 6.78 -51.93 -0.35 0.86 16 37 H 0.11 1.28 8.11 -51.93 -0.42 0.85 16 38 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.08 1.14 6.08 -51.93 -0.32 0.83 16 40 H 0.07 0.67 6.44 -51.93 -0.33 0.33 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.69 5.94 -51.93 -0.31 0.38 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.11 2.95 5.87 -51.93 -0.31 2.65 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.37 5.71 9.12 45.56 0.42 6.13 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -36.50 373.76 -7.06 -43.57 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.58 Total: 7.02 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.91 Total: 12.65 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.61 Total: -58.78 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.57 Total: -26.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.50 -7.06 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047503901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.146 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds