Wall clock time and date at job start Tue Mar 31 2020 18:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35911 * 117.00063 * 2 1 4 4 C 1.39128 * 120.47391 * 0.02562 * 3 2 1 5 5 C 1.38543 * 118.37622 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.21769 * 359.97438 * 5 4 3 7 7 N 1.31844 * 120.88718 * 359.97438 * 6 5 4 8 8 C 1.31835 * 121.78262 * 0.02785 * 7 6 5 9 9 C 1.50701 * 119.65786 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47245 * 89.99656 * 9 8 7 11 11 O 1.21283 * 119.99889 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00125 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00099 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00004 * 179.97438 * 12 10 9 15 15 H 1.08997 * 110.63892 * 3.14629 * 14 12 10 16 16 C 1.54328 * 110.71730 * 126.47995 * 14 12 10 17 17 N 1.47019 * 107.26861 * 140.55641 * 16 14 12 18 18 C 1.36936 * 125.64887 * 181.02208 * 17 16 14 19 19 H 1.08005 * 119.99630 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00333 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99760 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00158 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47156 * 89.99806 * 22 20 18 24 24 H 1.48496 * 109.47234 * 209.99703 * 22 20 18 25 25 H 1.48497 * 109.47088 * 329.99778 * 22 20 18 26 26 C 1.47427 * 108.70393 * 1.05906 * 17 16 14 27 27 C 1.54907 * 104.82983 * 335.87088 * 26 17 16 28 28 H 1.08993 * 111.00460 * 278.93156 * 27 26 17 29 29 O 1.42909 * 111.00071 * 155.08665 * 27 26 17 30 30 H 1.08996 * 109.46909 * 300.00018 * 1 2 3 31 31 H 1.08997 * 109.46921 * 59.99774 * 1 2 3 32 32 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.81501 * 0.04263 * 4 3 2 34 34 H 1.07996 * 120.39076 * 180.25235 * 5 4 3 35 35 H 1.07996 * 119.55105 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46982 * 209.99084 * 9 8 7 37 37 H 1.08995 * 109.47259 * 329.99592 * 9 8 7 38 38 H 1.08999 * 109.46983 * 89.99862 * 13 12 10 39 39 H 1.09003 * 109.46876 * 209.99641 * 13 12 10 40 40 H 1.09003 * 109.46678 * 329.99379 * 13 12 10 41 41 H 1.09003 * 109.87881 * 259.97659 * 16 14 12 42 42 H 1.08998 * 109.88515 * 21.14149 * 16 14 12 43 43 H 0.97005 * 119.99788 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36696 * 217.02783 * 26 17 16 45 45 H 1.09006 * 110.45684 * 94.75804 * 26 17 16 46 46 H 0.96700 * 114.00102 * 67.79841 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3840 0.0005 5 6 1.9717 3.5946 0.0000 6 6 3.3543 3.5975 -0.0006 7 7 4.0335 2.4674 0.0000 8 6 3.4306 1.2950 0.0005 9 6 4.2543 0.0330 0.0005 10 6 4.5295 -0.3873 1.4213 11 8 4.0987 0.2727 2.3432 12 7 5.2533 -1.4971 1.6676 13 6 5.7732 -2.2947 0.5541 14 6 5.5213 -1.9054 3.0489 15 1 5.0206 -1.2384 3.7506 16 6 5.0905 -3.3694 3.2788 17 7 6.1084 -3.9944 4.1359 18 6 6.1065 -5.2974 4.5571 19 1 5.3080 -5.9603 4.2580 20 6 7.1307 -5.7662 5.3683 21 7 8.1040 -4.9584 5.7323 22 14 7.1284 -7.5439 5.9421 23 1 7.8591 -8.3825 4.9583 24 1 7.7960 -7.6378 7.2652 25 1 5.7282 -8.0244 6.0590 26 6 7.1312 -2.9857 4.4677 27 6 7.0478 -1.9452 3.3232 28 1 7.5940 -2.2869 2.4440 29 8 7.5240 -0.6690 3.7555 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2184 2.3518 0.0016 34 1 1.4234 4.5250 0.0045 35 1 3.8850 4.5381 -0.0014 36 1 3.7073 -0.7579 -0.5128 37 1 5.1979 0.2150 -0.5138 38 1 6.7629 -1.9311 0.2777 39 1 5.8414 -3.3397 0.8565 40 1 5.1020 -2.2067 -0.3003 41 1 4.1204 -3.3967 3.7750 42 1 5.0362 -3.8940 2.3249 43 1 8.8199 -5.2861 6.2989 44 1 8.1203 -3.4428 4.4937 45 1 6.9060 -2.5155 5.4251 46 1 8.4731 -0.6450 3.9392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047503901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:20 Heat of formation + Delta-G solvation = -67.055622 kcal Electronic energy + Delta-G solvation = -29584.001703 eV Core-core repulsion = 25474.640219 eV Total energy + Delta-G solvation = -4109.361484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89784 -41.01712 -39.37531 -39.03221 -36.75894 -36.28332 -34.30848 -33.71526 -32.42805 -30.67665 -29.46247 -28.63397 -28.27580 -27.76236 -26.20513 -23.84186 -23.77191 -22.34777 -21.82667 -20.16189 -19.05496 -19.03002 -18.77768 -18.16112 -17.81962 -17.47612 -17.06649 -16.72520 -16.46098 -16.39805 -15.66964 -15.38238 -15.31110 -14.89782 -14.78932 -14.67617 -14.40320 -14.20140 -14.03241 -13.82756 -13.55237 -13.25223 -13.19179 -13.12140 -13.06510 -12.89202 -12.72041 -12.61060 -12.34643 -12.30143 -12.05241 -11.91070 -11.47789 -11.15050 -10.89918 -10.76728 -10.59755 -10.55619 -9.65719 -9.32588 -8.97507 -7.80546 -5.28061 0.10489 0.31195 1.48338 1.50536 1.59132 1.61885 1.89682 2.25223 2.47944 2.79937 3.09621 3.29102 3.31333 3.62410 3.67247 3.72112 3.82043 3.83239 4.06450 4.09071 4.15675 4.24703 4.28350 4.34646 4.36799 4.42745 4.47508 4.48643 4.53601 4.64217 4.70659 4.78137 4.80587 4.98672 5.00448 5.05536 5.12304 5.35285 5.44628 5.51031 5.52848 5.66751 6.19570 6.23171 6.40456 6.83835 7.02376 7.03742 7.15908 7.68734 8.31926 9.21215 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.002725 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.551918 B =10274.481446 C =11040.040180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.045 3.955 7 N -0.470 5.470 8 C 0.092 3.908 9 C -0.072 4.072 10 C 0.521 3.479 11 O -0.585 6.585 12 N -0.600 5.600 13 C 0.063 3.937 14 C 0.148 3.852 15 H 0.075 0.925 16 C 0.133 3.867 17 N -0.617 5.617 18 C -0.241 4.241 19 H 0.087 0.913 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.986 3.014 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.137 3.863 27 C 0.085 3.915 28 H 0.080 0.920 29 O -0.573 6.573 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.249 0.751 44 H 0.090 0.910 45 H -0.015 1.015 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 13.186 -18.998 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.030 3.970 4 C -0.195 4.195 5 C -0.145 4.145 6 C -0.112 4.112 7 N -0.180 5.180 8 C -0.047 4.047 9 C -0.111 4.111 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.332 5.332 13 C -0.078 4.078 14 C 0.043 3.957 15 H 0.093 0.907 16 C 0.007 3.993 17 N -0.344 5.344 18 C -0.369 4.369 19 H 0.105 0.895 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.813 3.187 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.196 1.196 26 C 0.011 3.989 27 C 0.024 3.976 28 H 0.098 0.902 29 O -0.380 6.380 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.185 0.815 34 H 0.192 0.808 35 H 0.197 0.803 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.003 0.997 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.363 13.365 -18.502 25.957 hybrid contribution -0.296 -0.861 1.197 1.503 sum -12.659 12.504 -17.305 24.821 Atomic orbital electron populations 1.23395 0.76187 1.05804 1.02376 1.86069 1.23654 1.25878 1.88225 1.19997 0.93033 0.86325 0.97596 1.22071 1.02175 0.91589 1.03692 1.22390 0.95255 0.99506 0.97374 1.23135 0.92746 0.96393 0.98923 1.67398 1.41388 0.98416 1.10756 1.20130 0.88802 0.93642 1.02111 1.20465 1.02670 0.94975 0.93028 1.20986 0.76662 0.79359 0.91937 1.90658 1.53110 1.54533 1.48147 1.47782 1.52944 1.26074 1.06394 1.22176 1.00773 0.96320 0.88519 1.21644 0.94644 0.95369 0.84024 0.90711 1.21621 0.91899 0.90614 0.95150 1.44520 1.24400 1.07635 1.57887 1.19476 1.06910 0.85548 1.24985 0.89495 1.25679 0.97134 1.02556 1.00297 1.69993 1.13717 1.35299 1.40832 0.84976 0.77776 0.78988 0.76933 1.20615 1.22267 1.19613 1.22314 0.96223 0.88052 0.92350 1.23436 0.94031 0.83359 0.96791 0.90194 1.86445 1.30323 1.31365 1.89832 0.92348 0.90425 0.86463 0.81452 0.80811 0.80257 0.84696 0.85458 0.91012 0.90474 0.87404 0.96181 0.92242 0.94099 0.89267 0.99701 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 113.37 1.11 1.33 16 2 O -0.33 -7.23 9.55 -92.55 -0.88 -8.12 16 3 C 0.08 1.89 6.67 22.60 0.15 2.04 16 4 C -0.17 -3.04 9.14 22.56 0.21 -2.83 16 5 C -0.13 -2.04 10.11 22.35 0.23 -1.81 16 6 C 0.05 0.95 11.18 84.69 0.95 1.90 16 7 N -0.47 -13.22 10.27 -183.51 -1.88 -15.10 16 8 C 0.09 2.56 5.29 42.67 0.23 2.79 16 9 C -0.07 -1.80 4.33 29.10 0.13 -1.67 16 10 C 0.52 18.02 7.67 87.66 0.67 18.70 16 11 O -0.58 -26.01 15.41 -3.04 -0.05 -26.06 16 12 N -0.60 -19.70 2.89 -815.94 -2.35 -22.06 16 13 C 0.06 1.44 9.10 127.77 1.16 2.61 16 14 C 0.15 6.10 3.10 46.18 0.14 6.25 16 15 H 0.07 3.62 7.00 -2.39 -0.02 3.61 16 16 C 0.13 5.78 6.80 86.73 0.59 6.37 16 17 N -0.62 -32.15 3.39 -691.98 -2.35 -34.50 16 18 C -0.24 -13.34 10.27 84.03 0.86 -12.47 16 19 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 21 N -0.95 -55.82 10.09 21.65 0.22 -55.60 16 22 Si 0.99 44.87 29.55 68.60 2.03 46.90 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.14 6.97 5.62 86.85 0.49 7.46 16 27 C 0.08 3.49 4.00 31.98 0.13 3.62 16 28 H 0.08 2.98 7.29 -2.39 -0.02 2.97 16 29 O -0.57 -22.79 13.47 -148.98 -2.01 -24.80 16 30 H 0.06 0.71 7.70 -2.39 -0.02 0.69 16 31 H 0.08 0.62 7.70 -2.39 -0.02 0.60 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.17 1.85 6.45 -2.91 -0.02 1.83 16 34 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.14 2.64 6.78 -2.39 -0.02 2.62 16 37 H 0.13 2.70 8.11 -2.39 -0.02 2.68 16 38 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 39 H 0.08 1.90 6.08 -2.39 -0.01 1.89 16 40 H 0.11 1.66 6.44 -2.39 -0.02 1.64 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 2.30 5.94 -2.39 -0.01 2.29 16 43 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 44 H 0.09 4.94 5.87 -2.39 -0.01 4.93 16 45 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 46 H 0.39 11.97 9.12 -74.06 -0.68 11.30 16 Total: -1.00 -82.86 373.76 0.57 -82.28 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.34 Total: 25.91 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 7.51 Total: 31.14 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.37 Total: -127.26 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -2.94 Total: -58.97 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.86 0.57 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047503901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.226 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds