Wall clock time and date at job start Tue Mar 31 2020 18:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99893 * 2 1 4 4 O 1.21610 * 120.00365 * 185.32759 * 3 2 1 5 5 C 1.47429 * 120.00083 * 5.32464 * 3 2 1 6 6 C 1.36085 * 126.44873 * 186.48440 * 5 3 2 7 7 O 1.34255 * 106.94700 * 180.02562 * 6 5 3 8 8 C 1.34057 * 108.22919 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.37877 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46788 * 269.97636 * 9 8 7 11 11 C 1.53000 * 117.49617 * 243.74560 * 10 9 8 12 12 C 1.53004 * 117.49415 * 175.08828 * 10 9 8 13 13 N 1.29935 * 109.23906 * 359.72265 * 8 7 6 14 14 C 1.46501 * 120.00197 * 180.02562 * 2 1 3 15 15 H 1.08999 * 110.64060 * 178.30958 * 14 2 1 16 16 C 1.54324 * 110.71433 * 301.44736 * 14 2 1 17 17 N 1.47024 * 107.27064 * 140.73764 * 16 14 2 18 18 C 1.36936 * 125.64878 * 181.02347 * 17 16 14 19 19 H 1.08000 * 120.00151 * 10.10897 * 18 17 16 20 20 C 1.38810 * 119.99959 * 190.11067 * 18 17 16 21 21 N 1.31627 * 119.99857 * 8.48686 * 20 18 17 22 22 Si 1.86801 * 120.00249 * 188.48813 * 20 18 17 23 23 H 1.48495 * 109.46885 * 265.00635 * 22 20 18 24 24 H 1.48506 * 109.47171 * 145.00617 * 22 20 18 25 25 H 1.48500 * 109.46827 * 25.00350 * 22 20 18 26 26 C 1.47420 * 108.69968 * 1.28465 * 17 16 14 27 27 C 1.55127 * 104.72505 * 335.55163 * 26 17 16 28 28 H 1.08996 * 111.19502 * 279.19158 * 27 26 17 29 29 O 1.42905 * 110.93752 * 155.28846 * 27 26 17 30 30 H 1.09005 * 109.47160 * 275.37732 * 1 2 3 31 31 H 1.08999 * 109.47441 * 35.38350 * 1 2 3 32 32 H 1.09007 * 109.46947 * 155.38224 * 1 2 3 33 33 H 1.07996 * 126.52945 * 0.02562 * 6 5 3 34 34 H 1.09000 * 109.46892 * 29.97838 * 9 8 7 35 35 H 1.08997 * 109.46750 * 149.97951 * 9 8 7 36 36 H 1.09002 * 115.55431 * 29.42228 * 10 9 8 37 37 H 1.08999 * 117.50346 * 0.02562 * 11 10 9 38 38 H 1.09008 * 117.50004 * 145.02493 * 11 10 9 39 39 H 1.09003 * 117.49785 * 214.97791 * 12 10 9 40 40 H 1.08998 * 117.50171 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.88633 * 21.31827 * 16 14 2 42 42 H 1.09005 * 109.88054 * 260.15270 * 16 14 2 43 43 H 0.97004 * 119.99579 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36766 * 94.48873 * 26 17 16 45 45 H 1.09011 * 110.36786 * 216.80451 * 26 17 16 46 46 H 0.96701 * 114.00199 * 67.96546 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3510 1.1696 -0.0978 5 6 1.4065 2.4412 0.1185 6 6 1.9348 3.6906 0.0099 7 8 0.9255 4.5587 0.1832 8 6 -0.1984 3.8587 0.3931 9 6 -1.5633 4.4509 0.6328 10 6 -1.7695 4.6657 2.1335 11 6 -2.8816 3.8661 2.8153 12 6 -3.0545 5.3682 2.5765 13 7 0.0739 2.5889 0.3508 14 6 2.1975 -1.2687 -0.0006 15 1 3.2726 -1.0916 -0.0306 16 6 1.8183 -2.1185 1.2305 17 7 1.7367 -3.5178 0.7866 18 6 1.4061 -4.5873 1.5753 19 1 1.0207 -4.4252 2.5711 20 6 1.5662 -5.8797 1.0949 21 7 2.1883 -6.0851 -0.0468 22 14 0.8989 -7.3275 2.0685 23 1 1.9771 -7.8899 2.9208 24 1 0.4127 -8.3722 1.1317 25 1 -0.2236 -6.8713 2.9271 26 6 2.0760 -3.5795 -0.6467 27 6 1.7549 -2.1622 -1.1893 28 1 0.6892 -2.0484 -1.3880 29 8 2.5246 -1.8766 -2.3590 30 1 -0.3634 0.0963 1.0232 31 1 -0.3634 0.8378 -0.5950 32 1 -0.3633 -0.9343 -0.4281 33 1 2.9691 3.9369 -0.1796 34 1 -1.6406 5.4069 0.1149 35 1 -2.3261 3.7702 0.2550 36 1 -0.8649 4.8614 2.7092 37 1 -3.4661 3.1867 2.1948 38 1 -2.7088 3.5360 3.8397 39 1 -2.9953 6.0257 3.4439 40 1 -3.7527 5.6777 1.7988 41 1 0.8527 -1.7964 1.6202 42 1 2.5834 -2.0179 2.0004 43 1 2.3005 -6.9883 -0.3823 44 1 3.1340 -3.8074 -0.7766 45 1 1.4617 -4.3262 -1.1502 46 1 2.2838 -2.4107 -3.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047581934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:13 Heat of formation + Delta-G solvation = 10.430057 kcal Electronic energy + Delta-G solvation = -29238.350219 eV Core-core repulsion = 25132.348766 eV Total energy + Delta-G solvation = -4106.001453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.62199 -39.76941 -38.00455 -37.76092 -35.34397 -35.03154 -34.50332 -32.16361 -31.75694 -28.73595 -28.15844 -27.34869 -26.49579 -24.83965 -23.56936 -22.75836 -22.23818 -21.18461 -20.49301 -20.28623 -19.06341 -17.79819 -17.14009 -17.04746 -16.95849 -16.41085 -16.08887 -15.72573 -15.00319 -14.81394 -14.64805 -14.46833 -13.90938 -13.84865 -13.64764 -13.21471 -13.10133 -12.96901 -12.72696 -12.42852 -12.15837 -12.06824 -11.89626 -11.80269 -11.51692 -11.40006 -11.17610 -10.87535 -10.83724 -10.80776 -10.65427 -10.44102 -10.15385 -9.96945 -9.92163 -9.78453 -9.25836 -9.19212 -8.66512 -8.27604 -6.88522 -5.79393 -3.14467 0.97966 1.87031 2.33812 3.05753 3.32215 3.37390 3.38254 3.43036 3.45084 3.62142 4.28292 4.40979 4.45685 4.48220 4.59743 4.67709 4.69182 4.86084 5.09603 5.16078 5.27245 5.33080 5.38614 5.40180 5.46662 5.47657 5.54289 5.57840 5.68731 5.71487 5.73746 5.78407 5.89407 5.95025 6.12000 6.15342 6.24250 6.56130 6.63857 6.91339 7.29466 7.32260 7.48008 7.60805 7.70028 8.13226 8.22209 8.27909 9.11851 9.73234 10.38693 11.32856 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.002816 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.122300 B = 9940.492139 C =11341.708546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.582 5.582 3 C 0.598 3.402 4 O -0.537 6.537 5 C -0.061 4.061 6 C 0.008 3.992 7 O -0.197 6.197 8 C 0.194 3.806 9 C 0.009 3.991 10 C -0.156 4.156 11 C -0.171 4.171 12 C -0.175 4.175 13 N -0.447 5.447 14 C 0.137 3.863 15 H 0.113 0.887 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.151 3.849 27 C 0.062 3.938 28 H 0.062 0.938 29 O -0.562 6.562 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.230 0.770 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 23.405 -0.671 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.312 5.312 3 C 0.384 3.616 4 O -0.415 6.415 5 C -0.181 4.181 6 C -0.066 4.066 7 O -0.083 6.083 8 C -0.015 4.015 9 C -0.029 4.029 10 C -0.175 4.175 11 C -0.208 4.208 12 C -0.212 4.212 13 N -0.177 5.177 14 C 0.033 3.967 15 H 0.131 0.869 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.025 3.975 27 C 0.002 3.998 28 H 0.080 0.920 29 O -0.366 6.366 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.417 23.125 -0.257 24.970 hybrid contribution 0.034 -0.793 0.101 0.800 sum -9.383 22.332 -0.156 24.224 Atomic orbital electron populations 1.21942 0.78464 1.02710 1.02594 1.47564 1.07666 1.05138 1.70872 1.16779 0.85963 0.81834 0.76976 1.90814 1.12901 1.86656 1.51086 1.21843 0.90318 0.95396 1.10515 1.25264 0.93540 0.87065 1.00690 1.84373 1.17104 1.39278 1.67590 1.26238 0.89579 0.85579 1.00114 1.19687 0.85864 1.01692 0.95633 1.22143 0.94444 1.06609 0.94345 1.23107 1.01368 0.94064 1.02241 1.23029 0.98938 0.95686 1.03500 1.71056 1.13247 1.16499 1.16917 1.22184 0.98157 0.81237 0.95096 0.86911 1.21553 0.98579 0.85886 0.93547 1.44271 1.81508 1.00888 1.05897 1.19036 1.35750 0.83726 0.97315 0.90335 1.24860 1.00154 0.97364 0.97911 1.69943 1.45351 1.20211 1.21025 0.86079 0.78546 0.82191 0.78808 1.21528 1.21579 1.20505 1.22075 0.99895 0.90723 0.84827 1.23789 0.93604 0.97596 0.84850 0.92024 1.86461 1.63422 1.65225 1.21492 0.92224 0.89914 0.91228 0.75345 0.88352 0.87240 0.87495 0.88121 0.88541 0.88517 0.88392 0.94797 0.95015 0.93571 0.94286 0.90587 0.77947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 8.04 59.85 0.48 1.75 16 2 N -0.58 -10.27 2.89 -173.10 -0.50 -10.77 16 3 C 0.60 10.56 7.66 -12.52 -0.10 10.47 16 4 O -0.54 -10.89 16.28 5.27 0.09 -10.81 16 5 C -0.06 -0.87 6.59 -83.02 -0.55 -1.41 16 6 C 0.01 0.09 11.95 29.96 0.36 0.45 16 7 O -0.20 -2.05 10.73 6.50 0.07 -1.98 16 8 C 0.19 1.96 7.51 -13.08 -0.10 1.87 16 9 C 0.01 0.06 6.12 -27.88 -0.17 -0.11 16 10 C -0.16 -1.02 5.72 -90.62 -0.52 -1.54 16 11 C -0.17 -1.09 10.18 -26.69 -0.27 -1.36 16 12 C -0.17 -0.88 10.25 -26.69 -0.27 -1.16 16 13 N -0.45 -5.69 8.11 -7.65 -0.06 -5.75 16 14 C 0.14 2.76 3.08 -66.10 -0.20 2.56 16 15 H 0.11 2.53 7.00 -51.93 -0.36 2.17 16 16 C 0.13 2.88 6.88 -3.06 -0.02 2.86 16 17 N -0.60 -15.37 3.39 -169.93 -0.58 -15.95 16 18 C -0.23 -6.38 10.24 -15.06 -0.15 -6.54 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.69 16 20 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16 21 N -0.92 -26.69 10.63 55.49 0.59 -26.10 16 22 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.15 3.66 5.17 -2.41 -0.01 3.65 16 27 C 0.06 1.24 3.95 -24.47 -0.10 1.15 16 28 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 29 O -0.56 -10.60 13.47 -35.23 -0.47 -11.08 16 30 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.08 1.14 5.91 -51.93 -0.31 0.84 16 32 H 0.07 1.05 6.15 -51.92 -0.32 0.73 16 33 H 0.23 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.61 7.88 -51.93 -0.41 0.20 16 36 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.71 7.06 -51.93 -0.37 0.35 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.04 1.05 8.08 -51.93 -0.42 0.63 16 45 H 0.08 1.98 6.88 -51.92 -0.36 1.62 16 46 H 0.37 5.39 9.12 45.56 0.42 5.80 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -34.26 378.48 -7.69 -41.95 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.79 Total: 5.60 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -1.72 Total: 12.37 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.55 Total: -58.57 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.32 Total: -23.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.26 -7.69 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047581934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.385 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds