Wall clock time and date at job start Tue Mar 31 2020 18:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99893 * 2 1 4 4 O 1.21610 * 120.00365 * 185.32759 * 3 2 1 5 5 C 1.47429 * 120.00083 * 5.32464 * 3 2 1 6 6 C 1.36085 * 126.44873 * 186.48440 * 5 3 2 7 7 O 1.34255 * 106.94700 * 180.02562 * 6 5 3 8 8 C 1.34057 * 108.22919 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.37877 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46788 * 269.97636 * 9 8 7 11 11 C 1.53000 * 117.49617 * 243.74560 * 10 9 8 12 12 C 1.53004 * 117.49415 * 175.08828 * 10 9 8 13 13 N 1.29935 * 109.23906 * 359.72265 * 8 7 6 14 14 C 1.46501 * 120.00197 * 180.02562 * 2 1 3 15 15 H 1.08999 * 110.64060 * 178.30958 * 14 2 1 16 16 C 1.54324 * 110.71433 * 301.44736 * 14 2 1 17 17 N 1.47024 * 107.27064 * 140.73764 * 16 14 2 18 18 C 1.36936 * 125.64878 * 181.02347 * 17 16 14 19 19 H 1.08000 * 120.00151 * 10.10897 * 18 17 16 20 20 C 1.38810 * 119.99959 * 190.11067 * 18 17 16 21 21 N 1.31627 * 119.99857 * 8.48686 * 20 18 17 22 22 Si 1.86801 * 120.00249 * 188.48813 * 20 18 17 23 23 H 1.48495 * 109.46885 * 265.00635 * 22 20 18 24 24 H 1.48506 * 109.47171 * 145.00617 * 22 20 18 25 25 H 1.48500 * 109.46827 * 25.00350 * 22 20 18 26 26 C 1.47420 * 108.69968 * 1.28465 * 17 16 14 27 27 C 1.55127 * 104.72505 * 335.55163 * 26 17 16 28 28 H 1.08996 * 111.19502 * 279.19158 * 27 26 17 29 29 O 1.42905 * 110.93752 * 155.28846 * 27 26 17 30 30 H 1.09005 * 109.47160 * 275.37732 * 1 2 3 31 31 H 1.08999 * 109.47441 * 35.38350 * 1 2 3 32 32 H 1.09007 * 109.46947 * 155.38224 * 1 2 3 33 33 H 1.07996 * 126.52945 * 0.02562 * 6 5 3 34 34 H 1.09000 * 109.46892 * 29.97838 * 9 8 7 35 35 H 1.08997 * 109.46750 * 149.97951 * 9 8 7 36 36 H 1.09002 * 115.55431 * 29.42228 * 10 9 8 37 37 H 1.08999 * 117.50346 * 0.02562 * 11 10 9 38 38 H 1.09008 * 117.50004 * 145.02493 * 11 10 9 39 39 H 1.09003 * 117.49785 * 214.97791 * 12 10 9 40 40 H 1.08998 * 117.50171 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.88633 * 21.31827 * 16 14 2 42 42 H 1.09005 * 109.88054 * 260.15270 * 16 14 2 43 43 H 0.97004 * 119.99579 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36766 * 94.48873 * 26 17 16 45 45 H 1.09011 * 110.36786 * 216.80451 * 26 17 16 46 46 H 0.96701 * 114.00199 * 67.96546 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3510 1.1696 -0.0978 5 6 1.4065 2.4412 0.1185 6 6 1.9348 3.6906 0.0099 7 8 0.9255 4.5587 0.1832 8 6 -0.1984 3.8587 0.3931 9 6 -1.5633 4.4509 0.6328 10 6 -1.7695 4.6657 2.1335 11 6 -2.8816 3.8661 2.8153 12 6 -3.0545 5.3682 2.5765 13 7 0.0739 2.5889 0.3508 14 6 2.1975 -1.2687 -0.0006 15 1 3.2726 -1.0916 -0.0306 16 6 1.8183 -2.1185 1.2305 17 7 1.7367 -3.5178 0.7866 18 6 1.4061 -4.5873 1.5753 19 1 1.0207 -4.4252 2.5711 20 6 1.5662 -5.8797 1.0949 21 7 2.1883 -6.0851 -0.0468 22 14 0.8989 -7.3275 2.0685 23 1 1.9771 -7.8899 2.9208 24 1 0.4127 -8.3722 1.1317 25 1 -0.2236 -6.8713 2.9271 26 6 2.0760 -3.5795 -0.6467 27 6 1.7549 -2.1622 -1.1893 28 1 0.6892 -2.0484 -1.3880 29 8 2.5246 -1.8766 -2.3590 30 1 -0.3634 0.0963 1.0232 31 1 -0.3634 0.8378 -0.5950 32 1 -0.3633 -0.9343 -0.4281 33 1 2.9691 3.9369 -0.1796 34 1 -1.6406 5.4069 0.1149 35 1 -2.3261 3.7702 0.2550 36 1 -0.8649 4.8614 2.7092 37 1 -3.4661 3.1867 2.1948 38 1 -2.7088 3.5360 3.8397 39 1 -2.9953 6.0257 3.4439 40 1 -3.7527 5.6777 1.7988 41 1 0.8527 -1.7964 1.6202 42 1 2.5834 -2.0179 2.0004 43 1 2.3005 -6.9883 -0.3823 44 1 3.1340 -3.8074 -0.7766 45 1 1.4617 -4.3262 -1.1502 46 1 2.2838 -2.4107 -3.1284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047581934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:12 Heat of formation + Delta-G solvation = -15.205751 kcal Electronic energy + Delta-G solvation = -29239.461871 eV Core-core repulsion = 25132.348766 eV Total energy + Delta-G solvation = -4107.113105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.50574 -41.23701 -39.41787 -38.44737 -36.78587 -36.52936 -35.77196 -33.83759 -32.79726 -30.51430 -29.18448 -28.91045 -27.82843 -26.61211 -24.92981 -23.18977 -23.02678 -22.41549 -22.07264 -21.32582 -20.42528 -19.08534 -18.99912 -18.39895 -17.88188 -17.60947 -17.30911 -16.75989 -16.59422 -16.30780 -15.80380 -15.48189 -15.17402 -15.12750 -14.85357 -14.52203 -14.47990 -14.34478 -13.89866 -13.74389 -13.58187 -13.42043 -13.21609 -13.10965 -12.78751 -12.73501 -12.67426 -12.29596 -12.23404 -12.06641 -11.92523 -11.76072 -11.57931 -11.29744 -11.24105 -10.94595 -10.85966 -10.75677 -10.14140 -9.70061 -8.97104 -7.91667 -5.30548 0.02444 0.91570 1.47188 1.48495 1.51237 1.58744 1.76271 2.10722 2.46690 2.73058 2.94927 3.03649 3.28447 3.47373 3.61503 3.76219 3.76588 3.82943 3.94963 4.04245 4.08812 4.13212 4.27904 4.28637 4.39289 4.45414 4.45815 4.58081 4.68933 4.72671 4.77015 4.78357 4.87414 4.89360 4.98285 5.10257 5.16589 5.29497 5.30421 5.33749 5.40162 5.44138 5.59123 6.10349 6.18808 6.46700 6.81614 6.92136 7.00363 7.65146 8.30630 9.19391 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.002816 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.122300 B = 9940.492139 C =11341.708546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.585 5.585 3 C 0.595 3.405 4 O -0.573 6.573 5 C -0.094 4.094 6 C 0.032 3.968 7 O -0.191 6.191 8 C 0.206 3.794 9 C 0.012 3.988 10 C -0.165 4.165 11 C -0.185 4.185 12 C -0.157 4.157 13 N -0.468 5.468 14 C 0.148 3.852 15 H 0.087 0.913 16 C 0.135 3.865 17 N -0.616 5.616 18 C -0.248 4.248 19 H 0.084 0.916 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.983 3.017 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.265 1.265 26 C 0.161 3.839 27 C 0.084 3.916 28 H 0.083 0.917 29 O -0.569 6.569 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.254 0.746 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.251 0.749 44 H 0.001 0.999 45 H 0.054 0.946 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 25.523 -0.567 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.314 5.314 3 C 0.384 3.616 4 O -0.453 6.453 5 C -0.213 4.213 6 C -0.043 4.043 7 O -0.077 6.077 8 C -0.003 4.003 9 C -0.026 4.026 10 C -0.184 4.184 11 C -0.222 4.222 12 C -0.194 4.194 13 N -0.197 5.197 14 C 0.043 3.957 15 H 0.105 0.895 16 C 0.008 3.992 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.102 0.898 20 C -0.253 4.253 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.190 1.190 26 C 0.035 3.965 27 C 0.023 3.977 28 H 0.101 0.899 29 O -0.376 6.376 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.269 0.731 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.654 25.264 -0.156 27.823 hybrid contribution 0.730 -1.348 0.093 1.535 sum -10.925 23.916 -0.063 26.293 Atomic orbital electron populations 1.22023 0.76606 1.03232 1.03139 1.47572 1.08618 1.04197 1.71035 1.17219 0.85772 0.82760 0.75861 1.90784 1.14500 1.87321 1.52698 1.21440 0.91355 0.94565 1.13934 1.25679 0.94464 0.86185 0.97938 1.84430 1.17079 1.38886 1.67330 1.26991 0.90476 0.84953 0.97912 1.19948 0.83809 1.03058 0.95776 1.22090 0.94477 1.07556 0.94253 1.23163 1.01802 0.95291 1.01933 1.23112 0.97792 0.94625 1.03845 1.70971 1.12493 1.17990 1.18291 1.21756 0.97115 0.82438 0.94390 0.89485 1.21581 0.98870 0.84561 0.94138 1.44524 1.81354 1.01961 1.06501 1.19422 1.35658 0.84670 0.97851 0.89815 1.25727 1.00588 0.99962 0.99058 1.70140 1.46471 1.20426 1.22561 0.85006 0.78043 0.78498 0.77392 1.21578 1.21639 1.18967 1.21834 0.97086 0.92978 0.84628 1.23465 0.94655 0.94403 0.85129 0.89910 1.86431 1.63621 1.65622 1.21907 0.91852 0.88453 0.91297 0.73058 0.85714 0.86082 0.88791 0.87801 0.89398 0.88078 0.86696 0.93243 0.96139 0.93987 0.98054 0.92724 0.75585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.60 8.04 127.77 1.03 3.63 16 2 N -0.58 -20.43 2.89 -819.81 -2.37 -22.80 16 3 C 0.59 20.93 7.66 86.66 0.66 21.59 16 4 O -0.57 -23.59 16.28 -4.06 -0.07 -23.66 16 5 C -0.09 -2.58 6.59 40.41 0.27 -2.31 16 6 C 0.03 0.66 11.95 67.32 0.80 1.46 16 7 O -0.19 -3.47 10.73 0.33 0.00 -3.46 16 8 C 0.21 3.66 7.51 88.39 0.66 4.33 16 9 C 0.01 0.11 6.12 29.85 0.18 0.29 16 10 C -0.16 -1.77 5.72 -10.79 -0.06 -1.83 16 11 C -0.18 -2.03 10.18 30.62 0.31 -1.71 16 12 C -0.16 -1.15 10.25 30.62 0.31 -0.84 16 13 N -0.47 -11.06 8.11 -293.02 -2.38 -13.43 16 14 C 0.15 6.07 3.08 46.18 0.14 6.21 16 15 H 0.09 4.06 7.00 -2.39 -0.02 4.04 16 16 C 0.13 6.01 6.88 86.73 0.60 6.60 16 17 N -0.62 -32.34 3.39 -691.54 -2.35 -34.69 16 18 C -0.25 -13.89 10.24 84.03 0.86 -13.03 16 19 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 20 C -0.06 -3.37 5.41 84.86 0.46 -2.91 16 21 N -0.95 -56.50 10.63 21.65 0.23 -56.27 16 22 Si 0.98 45.13 29.56 68.60 2.03 47.16 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C 0.16 8.07 5.17 86.93 0.45 8.52 16 27 C 0.08 3.38 3.95 32.06 0.13 3.51 16 28 H 0.08 3.01 6.16 -2.39 -0.01 3.00 16 29 O -0.57 -21.34 13.47 -148.98 -2.01 -23.34 16 30 H 0.06 1.76 8.07 -2.38 -0.02 1.74 16 31 H 0.10 2.51 5.91 -2.39 -0.01 2.50 16 32 H 0.07 1.96 6.15 -2.38 -0.01 1.94 16 33 H 0.25 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.12 0.94 7.88 -2.39 -0.02 0.92 16 36 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 37 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 38 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.05 2.06 7.06 -2.39 -0.02 2.04 16 42 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 45 H 0.05 2.95 6.88 -2.38 -0.02 2.93 16 46 H 0.39 11.07 9.12 -74.06 -0.68 10.40 16 Total: -1.00 -75.58 378.48 0.25 -75.33 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.34 Total: 21.65 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: 6.81 Total: 33.51 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -6.86 Total: -127.19 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -2.07 Total: -50.46 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.58 0.25 -75.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047581934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.121 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds