Wall clock time and date at job start Tue Mar 31 2020 19:16:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35706 * 117.00127 * 2 1
4 4 C 1.41927 * 126.87966 * 180.02562 * 3 2 1
5 5 C 1.35271 * 103.96255 * 180.02562 * 4 3 2
6 6 C 1.50698 * 126.71264 * 179.97438 * 5 4 3
7 7 C 1.52994 * 109.47416 * 89.99179 * 6 5 4
8 8 C 1.50703 * 109.46921 * 180.02562 * 7 6 5
9 9 O 1.21284 * 120.00317 * 0.02562 * 8 7 6
10 10 N 1.34779 * 120.00101 * 179.97438 * 8 7 6
11 11 C 1.46776 * 125.33520 * 0.02562 * 10 8 7
12 12 C 1.53971 * 106.62673 * 198.51561 * 11 10 8
13 13 H 1.09002 * 113.01755 * 94.27673 * 12 11 10
14 14 C 1.53926 * 109.91794 * 221.55636 * 12 11 10
15 15 N 1.47621 * 106.28305 * 80.85137 * 14 12 11
16 16 C 1.36936 * 125.43814 * 198.68628 * 15 14 12
17 17 H 1.08002 * 119.99503 * 180.83715 * 16 15 14
18 18 C 1.38811 * 120.00226 * 0.83460 * 16 15 14
19 19 N 1.31614 * 120.00009 * 0.02562 * 18 16 15
20 20 Si 1.86801 * 120.00001 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.47045 * 0.02562 * 20 18 16
22 22 H 1.48495 * 109.47180 * 120.00094 * 20 18 16
23 23 H 1.48501 * 109.47205 * 240.00459 * 20 18 16
24 24 C 1.46632 * 109.22512 * 19.40863 * 15 14 12
25 25 C 1.53696 * 108.01255 * 358.47815 * 24 15 14
26 26 H 1.09004 * 113.05609 * 106.18489 * 25 24 15
27 27 C 1.46663 * 125.34360 * 179.97438 * 10 8 7
28 28 O 1.34082 * 106.57972 * 0.23927 * 5 4 3
29 29 N 1.20915 * 111.71940 * 359.56657 * 28 5 4
30 30 H 1.08995 * 109.47137 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46781 * 299.99463 * 1 2 3
32 32 H 1.08997 * 109.47050 * 59.99243 * 1 2 3
33 33 H 1.08004 * 128.02193 * 359.97438 * 4 3 2
34 34 H 1.09006 * 109.46605 * 329.99111 * 6 5 4
35 35 H 1.09006 * 109.47107 * 209.99796 * 6 5 4
36 36 H 1.09000 * 109.47354 * 60.00795 * 7 6 5
37 37 H 1.09002 * 109.47515 * 299.99874 * 7 6 5
38 38 H 1.09003 * 110.03209 * 79.22309 * 11 10 8
39 39 H 1.08996 * 110.02884 * 317.80292 * 11 10 8
40 40 H 1.08995 * 110.01213 * 201.20095 * 14 12 11
41 41 H 1.08999 * 110.00929 * 322.56835 * 14 12 11
42 42 H 0.97005 * 120.00075 * 179.97438 * 19 18 16
43 43 H 1.08994 * 109.76271 * 238.83852 * 24 15 14
44 44 H 1.09002 * 109.76158 * 118.11564 * 24 15 14
45 45 H 1.09013 * 109.76822 * 59.83729 * 27 10 8
46 46 H 1.08998 * 109.77415 * 299.08915 * 27 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0452 1.2091 0.0000
4 6 3.4434 1.4526 -0.0005
5 6 3.5398 2.8019 0.0003
6 6 4.8089 3.6144 0.0008
7 6 5.2385 3.8902 -1.4415
8 6 6.5081 4.7022 -1.4409
9 8 7.0192 5.0279 -0.3903
10 7 7.0761 5.0657 -2.6078
11 6 6.5602 4.7365 -3.9419
12 6 7.7290 4.9278 -4.9258
13 1 8.2757 4.0056 -5.1227
14 6 7.2277 5.6156 -6.2083
15 7 7.1551 7.0581 -5.9032
16 6 6.4351 7.9839 -6.6099
17 1 6.4556 9.0229 -6.3158
18 6 5.6789 7.5871 -7.7042
19 7 5.6536 6.3209 -8.0623
20 14 4.6961 8.8501 -8.6678
21 1 4.8915 10.1935 -8.0659
22 1 5.1606 8.8677 -10.0781
23 1 3.2552 8.4931 -8.6256
24 6 7.9903 7.3466 -4.7330
25 6 8.5969 6.0219 -4.2437
26 1 9.6571 5.9255 -4.4781
27 6 8.3060 5.8530 -2.7438
28 8 2.2852 3.2750 0.0066
29 7 1.4701 2.3819 0.0010
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3633 0.5139 -0.8899
33 1 4.2448 0.7285 -0.0006
34 1 5.5947 3.0605 0.5144
35 1 4.6350 4.5596 0.5152
36 1 4.4528 4.4442 -1.9551
37 1 5.4125 2.9450 -1.9558
38 1 5.7406 5.4067 -4.2012
39 1 6.2185 3.7018 -3.9652
40 1 7.9181 5.4227 -7.0294
41 1 6.2330 5.2498 -6.4633
42 1 5.1249 6.0435 -8.8268
43 1 7.3802 7.7861 -3.9440
44 1 8.7873 8.0367 -5.0102
45 1 9.1336 5.3297 -2.2646
46 1 8.1709 6.8308 -2.2816
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001048843539.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:16:32
Heat of formation + Delta-G solvation = 24.317586 kcal
Electronic energy + Delta-G solvation = -28747.382639 eV
Core-core repulsion = 24641.983395 eV
Total energy + Delta-G solvation = -4105.399244 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-45.10012 -40.26071 -39.08424 -38.39273 -35.06714 -34.80564 -33.05313 -32.37057
-30.82483 -30.06294 -29.61692 -27.90258 -26.06940 -25.53698 -24.66867 -23.61216
-22.67900 -21.29332 -20.15231 -19.40212 -19.12052 -18.19708 -17.87626 -17.13647
-16.97302 -16.59244 -16.21040 -15.76032 -15.35966 -15.27346 -14.92638 -14.74538
-14.11879 -13.98060 -13.70992 -13.27558 -12.92389 -12.85627 -12.71649 -12.53297
-12.40995 -12.15164 -12.13379 -11.83332 -11.63222 -11.52843 -11.50559 -11.13642
-10.99152 -10.87215 -10.44057 -10.16506 -10.09345 -9.92119 -9.87430 -9.68751
-9.63338 -9.43537 -8.70135 -8.41336 -6.90440 -5.75215 -3.13702 1.17385
2.03895 2.49595 2.70400 2.82683 3.22723 3.36058 3.42597 3.44329
3.97191 4.40794 4.44006 4.63411 4.67523 4.73076 4.79275 4.82597
4.88078 4.91393 5.05655 5.15512 5.20155 5.22032 5.32627 5.43571
5.48126 5.54271 5.62411 5.68648 5.71932 5.79940 5.84033 5.89965
6.13728 6.22590 6.34072 6.45068 6.61159 6.65809 6.70216 6.79357
7.35759 7.56251 7.68665 7.74087 8.01857 8.23429 8.24280 9.14766
9.75854 10.39009 11.31460
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011359 B = 0.002659 C = 0.002299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2464.427544 B =10527.507944 C =12177.737394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.285 6.285
3 C 0.207 3.793
4 C -0.234 4.234
5 C 0.004 3.996
6 C -0.025 4.025
7 C -0.136 4.136
8 C 0.529 3.471
9 O -0.553 6.553
10 N -0.607 5.607
11 C 0.109 3.891
12 C -0.122 4.122
13 H 0.086 0.914
14 C 0.168 3.832
15 N -0.602 5.602
16 C -0.223 4.223
17 H 0.078 0.922
18 C -0.009 4.009
19 N -0.923 5.923
20 Si 0.913 3.087
21 H -0.280 1.280
22 H -0.291 1.291
23 H -0.290 1.290
24 C 0.143 3.857
25 C -0.109 4.109
26 H 0.095 0.905
27 C 0.120 3.880
28 O 0.102 5.898
29 N -0.410 5.410
30 H 0.105 0.895
31 H 0.058 0.942
32 H 0.060 0.940
33 H 0.179 0.821
34 H 0.108 0.892
35 H 0.101 0.899
36 H 0.102 0.898
37 H 0.100 0.900
38 H 0.083 0.917
39 H 0.067 0.933
40 H 0.022 0.978
41 H 0.099 0.901
42 H 0.252 0.748
43 H 0.026 0.974
44 H 0.022 0.978
45 H 0.062 0.938
46 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.482 -11.797 14.725 19.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.192 6.192
3 C 0.009 3.991
4 C -0.255 4.255
5 C -0.060 4.060
6 C -0.063 4.063
7 C -0.176 4.176
8 C 0.318 3.682
9 O -0.432 6.432
10 N -0.340 5.340
11 C -0.013 4.013
12 C -0.142 4.142
13 H 0.105 0.895
14 C 0.043 3.957
15 N -0.328 5.328
16 C -0.351 4.351
17 H 0.096 0.904
18 C -0.205 4.205
19 N -0.571 5.571
20 Si 0.744 3.256
21 H -0.205 1.205
22 H -0.218 1.218
23 H -0.217 1.217
24 C 0.017 3.983
25 C -0.129 4.129
26 H 0.113 0.887
27 C -0.003 4.003
28 O 0.041 5.959
29 N -0.137 5.137
30 H 0.123 0.877
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.196 0.804
34 H 0.127 0.873
35 H 0.119 0.881
36 H 0.121 0.879
37 H 0.118 0.882
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.040 0.960
41 H 0.117 0.883
42 H 0.063 0.937
43 H 0.044 0.956
44 H 0.040 0.960
45 H 0.080 0.920
46 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -3.570 -11.502 15.168 19.368
hybrid contribution -0.080 0.137 -0.763 0.779
sum -3.650 -11.364 14.406 18.708
Atomic orbital electron populations
1.23063 0.76860 1.04032 1.02401 1.86185 1.22571 1.20979 1.89417
1.22026 0.90967 0.85706 1.00365 1.21801 0.94273 0.95699 1.13765
1.24362 0.88314 0.93229 1.00064 1.19946 0.88520 1.00537 0.97324
1.21634 0.96593 1.01815 0.97544 1.20019 0.85551 0.80245 0.82388
1.90691 1.64868 1.57019 1.30596 1.48338 1.26351 1.53081 1.06225
1.22190 0.98192 1.00438 0.80471 1.23227 0.94932 0.98002 0.98078
0.89527 1.21573 1.01961 0.82966 0.89182 1.44456 1.53248 1.04418
1.30709 1.19110 1.19789 0.89191 1.07011 0.90382 1.24767 1.00582
0.96541 0.98614 1.69838 1.44750 1.13748 1.28804 0.86019 0.79653
0.80233 0.79721 1.20532 1.21757 1.21707 1.21203 0.93209 0.93265
0.90661 1.22785 1.00015 0.97333 0.92743 0.88707 1.21793 0.86282
0.95645 0.96577 1.84823 1.12275 1.29968 1.68797 1.74150 1.15721
0.96708 1.27118 0.87698 0.92311 0.92162 0.80387 0.87340 0.88082
0.87921 0.88214 0.89885 0.91489 0.96039 0.88280 0.93732 0.95626
0.96023 0.92002 0.91353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 10.74 101.05 1.08 1.33 16
2 O -0.29 -3.11 10.57 -18.82 -0.20 -3.31 16
3 C 0.21 2.46 8.01 -16.66 -0.13 2.33 16
4 C -0.23 -2.33 11.10 -39.23 -0.44 -2.76 16
5 C 0.00 0.04 6.73 -35.37 -0.24 -0.20 16
6 C -0.02 -0.23 5.07 -27.89 -0.14 -0.37 16
7 C -0.14 -1.40 4.72 -27.88 -0.13 -1.53 16
8 C 0.53 7.36 7.84 -10.98 -0.09 7.28 16
9 O -0.55 -9.11 16.29 5.55 0.09 -9.02 16
10 N -0.61 -8.90 3.31 -172.29 -0.57 -9.47 16
11 C 0.11 1.65 5.88 -3.39 -0.02 1.63 16
12 C -0.12 -2.00 4.12 -88.35 -0.36 -2.37 16
13 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16
14 C 0.17 3.68 4.94 -2.95 -0.01 3.67 16
15 N -0.60 -14.36 3.39 -171.23 -0.58 -14.94 16
16 C -0.22 -5.93 10.25 -15.06 -0.15 -6.08 16
17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16
19 N -0.92 -25.50 10.15 55.49 0.56 -24.94 16
20 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16
21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
24 C 0.14 2.79 6.60 -3.61 -0.02 2.77 16
25 C -0.11 -1.72 4.01 -88.60 -0.36 -2.08 16
26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
27 C 0.12 1.76 6.23 -3.58 -0.02 1.74 16
28 O 0.10 1.24 11.19 17.07 0.19 1.43 16
29 N -0.41 -5.30 11.54 30.38 0.35 -4.95 16
30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.18 1.33 8.06 -52.48 -0.42 0.90 16
34 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16
35 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16
36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16
37 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16
38 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16
39 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16
40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
41 H 0.10 2.43 5.98 -51.93 -0.31 2.12 16
42 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16
43 H 0.03 0.52 7.29 -51.93 -0.38 0.14 16
44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
45 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16
46 H 0.07 1.05 7.43 -51.93 -0.39 0.66 16
LS Contribution 376.64 15.07 5.68 5.68
Total: -1.00 -31.61 376.64 -7.53 -39.14
By element:
Atomic # 1 Polarization: 5.87 SS G_CDS: -6.90 Total: -1.02 kcal
Atomic # 6 Polarization: 6.13 SS G_CDS: -1.13 Total: 5.00 kcal
Atomic # 7 Polarization: -54.07 SS G_CDS: -0.24 Total: -54.30 kcal
Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.90 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -31.61 -7.53 -39.14 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001048843539.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.457 kcal
(2) G-P(sol) polarization free energy of solvation -31.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds