Wall clock time and date at job start Tue Mar 31 2020 19:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35706 * 117.00127 * 2 1 4 4 C 1.41927 * 126.87966 * 180.02562 * 3 2 1 5 5 C 1.35271 * 103.96255 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.71264 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47416 * 89.99179 * 6 5 4 8 8 C 1.50703 * 109.46921 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00317 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00101 * 179.97438 * 8 7 6 11 11 C 1.46776 * 125.33520 * 0.02562 * 10 8 7 12 12 C 1.53971 * 106.62673 * 198.51561 * 11 10 8 13 13 H 1.09002 * 113.01755 * 94.27673 * 12 11 10 14 14 C 1.53926 * 109.91794 * 221.55636 * 12 11 10 15 15 N 1.47621 * 106.28305 * 80.85137 * 14 12 11 16 16 C 1.36936 * 125.43814 * 198.68628 * 15 14 12 17 17 H 1.08002 * 119.99503 * 180.83715 * 16 15 14 18 18 C 1.38811 * 120.00226 * 0.83460 * 16 15 14 19 19 N 1.31614 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47180 * 120.00094 * 20 18 16 23 23 H 1.48501 * 109.47205 * 240.00459 * 20 18 16 24 24 C 1.46632 * 109.22512 * 19.40863 * 15 14 12 25 25 C 1.53696 * 108.01255 * 358.47815 * 24 15 14 26 26 H 1.09004 * 113.05609 * 106.18489 * 25 24 15 27 27 C 1.46663 * 125.34360 * 179.97438 * 10 8 7 28 28 O 1.34082 * 106.57972 * 0.23927 * 5 4 3 29 29 N 1.20915 * 111.71940 * 359.56657 * 28 5 4 30 30 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46781 * 299.99463 * 1 2 3 32 32 H 1.08997 * 109.47050 * 59.99243 * 1 2 3 33 33 H 1.08004 * 128.02193 * 359.97438 * 4 3 2 34 34 H 1.09006 * 109.46605 * 329.99111 * 6 5 4 35 35 H 1.09006 * 109.47107 * 209.99796 * 6 5 4 36 36 H 1.09000 * 109.47354 * 60.00795 * 7 6 5 37 37 H 1.09002 * 109.47515 * 299.99874 * 7 6 5 38 38 H 1.09003 * 110.03209 * 79.22309 * 11 10 8 39 39 H 1.08996 * 110.02884 * 317.80292 * 11 10 8 40 40 H 1.08995 * 110.01213 * 201.20095 * 14 12 11 41 41 H 1.08999 * 110.00929 * 322.56835 * 14 12 11 42 42 H 0.97005 * 120.00075 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.76271 * 238.83852 * 24 15 14 44 44 H 1.09002 * 109.76158 * 118.11564 * 24 15 14 45 45 H 1.09013 * 109.76822 * 59.83729 * 27 10 8 46 46 H 1.08998 * 109.77415 * 299.08915 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4434 1.4526 -0.0005 5 6 3.5398 2.8019 0.0003 6 6 4.8089 3.6144 0.0008 7 6 5.2385 3.8902 -1.4415 8 6 6.5081 4.7022 -1.4409 9 8 7.0192 5.0279 -0.3903 10 7 7.0761 5.0657 -2.6078 11 6 6.5602 4.7365 -3.9419 12 6 7.7290 4.9278 -4.9258 13 1 8.2757 4.0056 -5.1227 14 6 7.2277 5.6156 -6.2083 15 7 7.1551 7.0581 -5.9032 16 6 6.4351 7.9839 -6.6099 17 1 6.4556 9.0229 -6.3158 18 6 5.6789 7.5871 -7.7042 19 7 5.6536 6.3209 -8.0623 20 14 4.6961 8.8501 -8.6678 21 1 4.8915 10.1935 -8.0659 22 1 5.1606 8.8677 -10.0781 23 1 3.2552 8.4931 -8.6256 24 6 7.9903 7.3466 -4.7330 25 6 8.5969 6.0219 -4.2437 26 1 9.6571 5.9255 -4.4781 27 6 8.3060 5.8530 -2.7438 28 8 2.2852 3.2750 0.0066 29 7 1.4701 2.3819 0.0010 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 4.2448 0.7285 -0.0006 34 1 5.5947 3.0605 0.5144 35 1 4.6350 4.5596 0.5152 36 1 4.4528 4.4442 -1.9551 37 1 5.4125 2.9450 -1.9558 38 1 5.7406 5.4067 -4.2012 39 1 6.2185 3.7018 -3.9652 40 1 7.9181 5.4227 -7.0294 41 1 6.2330 5.2498 -6.4633 42 1 5.1249 6.0435 -8.8268 43 1 7.3802 7.7861 -3.9440 44 1 8.7873 8.0367 -5.0102 45 1 9.1336 5.3297 -2.2646 46 1 8.1709 6.8308 -2.2816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048843539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:31 Heat of formation + Delta-G solvation = 3.389453 kcal Electronic energy + Delta-G solvation = -28748.290151 eV Core-core repulsion = 24641.983395 eV Total energy + Delta-G solvation = -4106.306756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.95136 -41.49316 -39.85296 -39.68381 -36.55467 -35.71491 -34.11341 -33.85178 -31.96225 -31.53986 -30.94570 -28.57466 -27.50988 -27.02488 -25.93338 -24.46519 -23.99004 -22.10189 -21.80784 -20.77594 -20.23345 -19.11302 -18.81575 -18.71604 -17.85901 -17.73286 -17.35107 -16.73252 -16.54116 -16.41807 -16.15888 -15.97240 -15.49572 -15.08441 -14.88039 -14.50214 -14.37186 -14.01998 -13.66761 -13.63616 -13.49313 -13.26768 -13.16363 -13.11220 -12.98051 -12.85471 -12.73419 -12.66622 -12.43977 -11.97064 -11.92438 -11.84622 -11.71065 -11.48387 -11.35120 -10.98011 -10.69372 -10.51834 -10.30175 -9.60241 -8.84528 -7.78702 -5.18388 0.36348 1.21725 1.47539 1.48706 1.57885 1.62121 1.75259 1.95693 2.25238 2.50587 3.17119 3.32566 3.35962 3.60181 3.67937 3.82475 3.86581 3.91597 3.96062 4.04355 4.18942 4.22153 4.24506 4.33305 4.34287 4.44212 4.51199 4.57794 4.60149 4.69114 4.82070 4.85564 4.90351 4.94281 4.98268 5.06895 5.07731 5.22165 5.28343 5.36691 5.50810 5.63986 5.85969 5.93342 6.31794 6.55051 7.12823 7.14757 7.18706 7.81631 8.43124 9.25387 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.002659 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.427544 B =10527.507944 C =12177.737394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.194 3.806 4 C -0.229 4.229 5 C 0.008 3.992 6 C -0.016 4.016 7 C -0.130 4.130 8 C 0.530 3.470 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.119 3.881 12 C -0.110 4.110 13 H 0.119 0.881 14 C 0.174 3.826 15 N -0.622 5.622 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.139 3.861 25 C -0.096 4.096 26 H 0.120 0.880 27 C 0.122 3.878 28 O 0.085 5.915 29 N -0.434 5.434 30 H 0.135 0.865 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.205 0.795 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.049 0.951 39 H 0.099 0.901 40 H -0.006 1.006 41 H 0.069 0.931 42 H 0.247 0.753 43 H 0.018 0.982 44 H 0.021 0.979 45 H 0.082 0.918 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -13.201 15.785 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.201 6.201 3 C -0.003 4.003 4 C -0.250 4.250 5 C -0.055 4.055 6 C -0.054 4.054 7 C -0.169 4.169 8 C 0.320 3.680 9 O -0.459 6.459 10 N -0.343 5.343 11 C -0.003 4.003 12 C -0.130 4.130 13 H 0.137 0.863 14 C 0.049 3.951 15 N -0.348 5.348 16 C -0.366 4.366 17 H 0.092 0.908 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.801 3.199 21 H -0.197 1.197 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.013 3.987 25 C -0.115 4.115 26 H 0.138 0.862 27 C 0.000 4.000 28 O 0.026 5.974 29 N -0.163 5.163 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.222 0.778 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.012 0.988 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.039 0.961 45 H 0.100 0.900 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.820 -12.895 16.251 20.936 hybrid contribution -0.314 0.613 -1.073 1.275 sum -3.133 -12.282 15.178 19.774 Atomic orbital electron populations 1.23292 0.75485 1.05962 1.02072 1.86179 1.24035 1.20607 1.89311 1.22411 0.91955 0.85802 1.00152 1.22168 0.94105 0.96000 1.12745 1.24514 0.87837 0.93452 0.99742 1.19916 0.88355 1.00461 0.96708 1.21642 0.94547 1.02205 0.98548 1.20557 0.86045 0.79826 0.81558 1.90684 1.65799 1.58068 1.31319 1.48393 1.26441 1.53208 1.06252 1.21980 0.96555 1.01452 0.80359 1.23114 0.95663 0.98859 0.95374 0.86347 1.21333 0.99850 0.82599 0.91343 1.44723 1.53579 1.05017 1.31502 1.19384 1.20058 0.89787 1.07400 0.90751 1.25479 1.01828 0.98226 0.99729 1.70054 1.45312 1.14981 1.28910 0.85104 0.78007 0.78653 0.78131 1.19651 1.21983 1.21857 1.21352 0.92580 0.95694 0.89043 1.22746 1.00978 0.94498 0.93322 0.86185 1.21751 0.87101 0.95670 0.95502 1.84785 1.13098 1.30178 1.69301 1.74139 1.16509 0.97308 1.28334 0.84673 0.92418 0.92714 0.77763 0.85828 0.88593 0.88096 0.85830 0.93266 0.88306 0.98793 0.91293 0.94300 0.96426 0.96053 0.89953 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.74 113.37 1.22 1.60 16 2 O -0.29 -6.08 10.57 -90.27 -0.95 -7.03 16 3 C 0.19 4.40 8.01 85.79 0.69 5.09 16 4 C -0.23 -4.06 11.10 22.50 0.25 -3.81 16 5 C 0.01 0.15 6.73 25.00 0.17 0.32 16 6 C -0.02 -0.26 5.07 29.85 0.15 -0.11 16 7 C -0.13 -2.34 4.72 29.85 0.14 -2.20 16 8 C 0.53 13.51 7.84 87.66 0.69 14.20 16 9 O -0.58 -17.86 16.29 -3.04 -0.05 -17.91 16 10 N -0.61 -16.48 3.31 -817.38 -2.71 -19.19 16 11 C 0.12 3.37 5.88 86.65 0.51 3.88 16 12 C -0.11 -3.40 4.12 -9.32 -0.04 -3.44 16 13 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 14 C 0.17 7.68 4.94 86.48 0.43 8.11 16 15 N -0.62 -30.13 3.39 -695.66 -2.36 -32.49 16 16 C -0.24 -12.87 10.25 84.03 0.86 -12.01 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 18 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 19 N -0.94 -53.39 10.15 21.65 0.22 -53.17 16 20 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 C 0.14 5.38 6.60 86.59 0.57 5.95 16 25 C -0.10 -2.83 4.01 -9.49 -0.04 -2.86 16 26 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 27 C 0.12 3.30 6.23 86.59 0.54 3.84 16 28 O 0.09 2.03 11.19 71.25 0.80 2.83 16 29 N -0.43 -11.05 11.54 -172.60 -1.99 -13.04 16 30 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.12 1.67 8.10 -2.38 -0.02 1.65 16 35 H 0.10 1.68 8.10 -2.38 -0.02 1.66 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 1.68 7.87 -2.39 -0.02 1.66 16 38 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16 39 H 0.10 2.18 7.61 -2.39 -0.02 2.16 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.07 3.47 5.98 -2.39 -0.01 3.46 16 42 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 43 H 0.02 0.72 7.29 -2.39 -0.02 0.70 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.06 1.71 7.43 -2.39 -0.02 1.69 16 Total: -1.00 -70.04 376.64 2.57 -67.48 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.99 Total: 10.04 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.60 Total: 15.76 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.84 Total: -117.89 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.21 Total: -22.11 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.04 2.57 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048843539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.866 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds