Wall clock time and date at job start Tue Mar 31 2020 19:16:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35706 * 117.00127 * 2 1
4 4 C 1.41927 * 126.87966 * 180.02562 * 3 2 1
5 5 C 1.35271 * 103.96255 * 180.02562 * 4 3 2
6 6 C 1.50698 * 126.71264 * 179.97438 * 5 4 3
7 7 C 1.52994 * 109.47416 * 89.99179 * 6 5 4
8 8 C 1.50703 * 109.46921 * 180.02562 * 7 6 5
9 9 O 1.21284 * 120.00317 * 0.02562 * 8 7 6
10 10 N 1.34779 * 120.00101 * 179.97438 * 8 7 6
11 11 C 1.46776 * 125.33520 * 0.02562 * 10 8 7
12 12 C 1.53971 * 106.62673 * 198.51561 * 11 10 8
13 13 H 1.09002 * 113.01755 * 94.27673 * 12 11 10
14 14 C 1.53926 * 109.91794 * 221.55636 * 12 11 10
15 15 N 1.47621 * 106.28305 * 80.85137 * 14 12 11
16 16 C 1.36936 * 125.43814 * 198.68628 * 15 14 12
17 17 H 1.08002 * 119.99503 * 180.83715 * 16 15 14
18 18 C 1.38811 * 120.00226 * 0.83460 * 16 15 14
19 19 N 1.31614 * 120.00009 * 0.02562 * 18 16 15
20 20 Si 1.86801 * 120.00001 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.47045 * 0.02562 * 20 18 16
22 22 H 1.48495 * 109.47180 * 120.00094 * 20 18 16
23 23 H 1.48501 * 109.47205 * 240.00459 * 20 18 16
24 24 C 1.46632 * 109.22512 * 19.40863 * 15 14 12
25 25 C 1.53696 * 108.01255 * 358.47815 * 24 15 14
26 26 H 1.09004 * 113.05609 * 106.18489 * 25 24 15
27 27 C 1.46663 * 125.34360 * 179.97438 * 10 8 7
28 28 O 1.34082 * 106.57972 * 0.23927 * 5 4 3
29 29 N 1.20915 * 111.71940 * 359.56657 * 28 5 4
30 30 H 1.08995 * 109.47137 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46781 * 299.99463 * 1 2 3
32 32 H 1.08997 * 109.47050 * 59.99243 * 1 2 3
33 33 H 1.08004 * 128.02193 * 359.97438 * 4 3 2
34 34 H 1.09006 * 109.46605 * 329.99111 * 6 5 4
35 35 H 1.09006 * 109.47107 * 209.99796 * 6 5 4
36 36 H 1.09000 * 109.47354 * 60.00795 * 7 6 5
37 37 H 1.09002 * 109.47515 * 299.99874 * 7 6 5
38 38 H 1.09003 * 110.03209 * 79.22309 * 11 10 8
39 39 H 1.08996 * 110.02884 * 317.80292 * 11 10 8
40 40 H 1.08995 * 110.01213 * 201.20095 * 14 12 11
41 41 H 1.08999 * 110.00929 * 322.56835 * 14 12 11
42 42 H 0.97005 * 120.00075 * 179.97438 * 19 18 16
43 43 H 1.08994 * 109.76271 * 238.83852 * 24 15 14
44 44 H 1.09002 * 109.76158 * 118.11564 * 24 15 14
45 45 H 1.09013 * 109.76822 * 59.83729 * 27 10 8
46 46 H 1.08998 * 109.77415 * 299.08915 * 27 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0452 1.2091 0.0000
4 6 3.4434 1.4526 -0.0005
5 6 3.5398 2.8019 0.0003
6 6 4.8089 3.6144 0.0008
7 6 5.2385 3.8902 -1.4415
8 6 6.5081 4.7022 -1.4409
9 8 7.0192 5.0279 -0.3903
10 7 7.0761 5.0657 -2.6078
11 6 6.5602 4.7365 -3.9419
12 6 7.7290 4.9278 -4.9258
13 1 8.2757 4.0056 -5.1227
14 6 7.2277 5.6156 -6.2083
15 7 7.1551 7.0581 -5.9032
16 6 6.4351 7.9839 -6.6099
17 1 6.4556 9.0229 -6.3158
18 6 5.6789 7.5871 -7.7042
19 7 5.6536 6.3209 -8.0623
20 14 4.6961 8.8501 -8.6678
21 1 4.8915 10.1935 -8.0659
22 1 5.1606 8.8677 -10.0781
23 1 3.2552 8.4931 -8.6256
24 6 7.9903 7.3466 -4.7330
25 6 8.5969 6.0219 -4.2437
26 1 9.6571 5.9255 -4.4781
27 6 8.3060 5.8530 -2.7438
28 8 2.2852 3.2750 0.0066
29 7 1.4701 2.3819 0.0010
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3633 0.5139 -0.8899
33 1 4.2448 0.7285 -0.0006
34 1 5.5947 3.0605 0.5144
35 1 4.6350 4.5596 0.5152
36 1 4.4528 4.4442 -1.9551
37 1 5.4125 2.9450 -1.9558
38 1 5.7406 5.4067 -4.2012
39 1 6.2185 3.7018 -3.9652
40 1 7.9181 5.4227 -7.0294
41 1 6.2330 5.2498 -6.4633
42 1 5.1249 6.0435 -8.8268
43 1 7.3802 7.7861 -3.9440
44 1 8.7873 8.0367 -5.0102
45 1 9.1336 5.3297 -2.2646
46 1 8.1709 6.8308 -2.2816
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001048843539.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:16:31
Heat of formation + Delta-G solvation = 3.389453 kcal
Electronic energy + Delta-G solvation = -28748.290151 eV
Core-core repulsion = 24641.983395 eV
Total energy + Delta-G solvation = -4106.306756 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-45.95136 -41.49316 -39.85296 -39.68381 -36.55467 -35.71491 -34.11341 -33.85178
-31.96225 -31.53986 -30.94570 -28.57466 -27.50988 -27.02488 -25.93338 -24.46519
-23.99004 -22.10189 -21.80784 -20.77594 -20.23345 -19.11302 -18.81575 -18.71604
-17.85901 -17.73286 -17.35107 -16.73252 -16.54116 -16.41807 -16.15888 -15.97240
-15.49572 -15.08441 -14.88039 -14.50214 -14.37186 -14.01998 -13.66761 -13.63616
-13.49313 -13.26768 -13.16363 -13.11220 -12.98051 -12.85471 -12.73419 -12.66622
-12.43977 -11.97064 -11.92438 -11.84622 -11.71065 -11.48387 -11.35120 -10.98011
-10.69372 -10.51834 -10.30175 -9.60241 -8.84528 -7.78702 -5.18388 0.36348
1.21725 1.47539 1.48706 1.57885 1.62121 1.75259 1.95693 2.25238
2.50587 3.17119 3.32566 3.35962 3.60181 3.67937 3.82475 3.86581
3.91597 3.96062 4.04355 4.18942 4.22153 4.24506 4.33305 4.34287
4.44212 4.51199 4.57794 4.60149 4.69114 4.82070 4.85564 4.90351
4.94281 4.98268 5.06895 5.07731 5.22165 5.28343 5.36691 5.50810
5.63986 5.85969 5.93342 6.31794 6.55051 7.12823 7.14757 7.18706
7.81631 8.43124 9.25387
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011359 B = 0.002659 C = 0.002299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2464.427544 B =10527.507944 C =12177.737394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.295 6.295
3 C 0.194 3.806
4 C -0.229 4.229
5 C 0.008 3.992
6 C -0.016 4.016
7 C -0.130 4.130
8 C 0.530 3.470
9 O -0.578 6.578
10 N -0.610 5.610
11 C 0.119 3.881
12 C -0.110 4.110
13 H 0.119 0.881
14 C 0.174 3.826
15 N -0.622 5.622
16 C -0.237 4.237
17 H 0.075 0.925
18 C -0.059 4.059
19 N -0.943 5.943
20 Si 0.972 3.028
21 H -0.272 1.272
22 H -0.293 1.293
23 H -0.292 1.292
24 C 0.139 3.861
25 C -0.096 4.096
26 H 0.120 0.880
27 C 0.122 3.878
28 O 0.085 5.915
29 N -0.434 5.434
30 H 0.135 0.865
31 H 0.057 0.943
32 H 0.054 0.946
33 H 0.205 0.795
34 H 0.124 0.876
35 H 0.096 0.904
36 H 0.101 0.899
37 H 0.124 0.876
38 H 0.049 0.951
39 H 0.099 0.901
40 H -0.006 1.006
41 H 0.069 0.931
42 H 0.247 0.753
43 H 0.018 0.982
44 H 0.021 0.979
45 H 0.082 0.918
46 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.747 -13.201 15.785 20.651
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.201 6.201
3 C -0.003 4.003
4 C -0.250 4.250
5 C -0.055 4.055
6 C -0.054 4.054
7 C -0.169 4.169
8 C 0.320 3.680
9 O -0.459 6.459
10 N -0.343 5.343
11 C -0.003 4.003
12 C -0.130 4.130
13 H 0.137 0.863
14 C 0.049 3.951
15 N -0.348 5.348
16 C -0.366 4.366
17 H 0.092 0.908
18 C -0.253 4.253
19 N -0.593 5.593
20 Si 0.801 3.199
21 H -0.197 1.197
22 H -0.220 1.220
23 H -0.219 1.219
24 C 0.013 3.987
25 C -0.115 4.115
26 H 0.138 0.862
27 C 0.000 4.000
28 O 0.026 5.974
29 N -0.163 5.163
30 H 0.153 0.847
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.222 0.778
34 H 0.142 0.858
35 H 0.114 0.886
36 H 0.119 0.881
37 H 0.142 0.858
38 H 0.067 0.933
39 H 0.117 0.883
40 H 0.012 0.988
41 H 0.087 0.913
42 H 0.057 0.943
43 H 0.036 0.964
44 H 0.039 0.961
45 H 0.100 0.900
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -2.820 -12.895 16.251 20.936
hybrid contribution -0.314 0.613 -1.073 1.275
sum -3.133 -12.282 15.178 19.774
Atomic orbital electron populations
1.23292 0.75485 1.05962 1.02072 1.86179 1.24035 1.20607 1.89311
1.22411 0.91955 0.85802 1.00152 1.22168 0.94105 0.96000 1.12745
1.24514 0.87837 0.93452 0.99742 1.19916 0.88355 1.00461 0.96708
1.21642 0.94547 1.02205 0.98548 1.20557 0.86045 0.79826 0.81558
1.90684 1.65799 1.58068 1.31319 1.48393 1.26441 1.53208 1.06252
1.21980 0.96555 1.01452 0.80359 1.23114 0.95663 0.98859 0.95374
0.86347 1.21333 0.99850 0.82599 0.91343 1.44723 1.53579 1.05017
1.31502 1.19384 1.20058 0.89787 1.07400 0.90751 1.25479 1.01828
0.98226 0.99729 1.70054 1.45312 1.14981 1.28910 0.85104 0.78007
0.78653 0.78131 1.19651 1.21983 1.21857 1.21352 0.92580 0.95694
0.89043 1.22746 1.00978 0.94498 0.93322 0.86185 1.21751 0.87101
0.95670 0.95502 1.84785 1.13098 1.30178 1.69301 1.74139 1.16509
0.97308 1.28334 0.84673 0.92418 0.92714 0.77763 0.85828 0.88593
0.88096 0.85830 0.93266 0.88306 0.98793 0.91293 0.94300 0.96426
0.96053 0.89953 0.92327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.74 113.37 1.22 1.60 16
2 O -0.29 -6.08 10.57 -90.27 -0.95 -7.03 16
3 C 0.19 4.40 8.01 85.79 0.69 5.09 16
4 C -0.23 -4.06 11.10 22.50 0.25 -3.81 16
5 C 0.01 0.15 6.73 25.00 0.17 0.32 16
6 C -0.02 -0.26 5.07 29.85 0.15 -0.11 16
7 C -0.13 -2.34 4.72 29.85 0.14 -2.20 16
8 C 0.53 13.51 7.84 87.66 0.69 14.20 16
9 O -0.58 -17.86 16.29 -3.04 -0.05 -17.91 16
10 N -0.61 -16.48 3.31 -817.38 -2.71 -19.19 16
11 C 0.12 3.37 5.88 86.65 0.51 3.88 16
12 C -0.11 -3.40 4.12 -9.32 -0.04 -3.44 16
13 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16
14 C 0.17 7.68 4.94 86.48 0.43 8.11 16
15 N -0.62 -30.13 3.39 -695.66 -2.36 -32.49 16
16 C -0.24 -12.87 10.25 84.03 0.86 -12.01 16
17 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16
18 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16
19 N -0.94 -53.39 10.15 21.65 0.22 -53.17 16
20 Si 0.97 44.70 29.55 68.60 2.03 46.73 16
21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16
24 C 0.14 5.38 6.60 86.59 0.57 5.95 16
25 C -0.10 -2.83 4.01 -9.49 -0.04 -2.86 16
26 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16
27 C 0.12 3.30 6.23 86.59 0.54 3.84 16
28 O 0.09 2.03 11.19 71.25 0.80 2.83 16
29 N -0.43 -11.05 11.54 -172.60 -1.99 -13.04 16
30 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16
32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16
34 H 0.12 1.67 8.10 -2.38 -0.02 1.65 16
35 H 0.10 1.68 8.10 -2.38 -0.02 1.66 16
36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16
37 H 0.12 1.68 7.87 -2.39 -0.02 1.66 16
38 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16
39 H 0.10 2.18 7.61 -2.39 -0.02 2.16 16
40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
41 H 0.07 3.47 5.98 -2.39 -0.01 3.46 16
42 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16
43 H 0.02 0.72 7.29 -2.39 -0.02 0.70 16
44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
45 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16
46 H 0.06 1.71 7.43 -2.39 -0.02 1.69 16
Total: -1.00 -70.04 376.64 2.57 -67.48
By element:
Atomic # 1 Polarization: 9.06 SS G_CDS: 0.99 Total: 10.04 kcal
Atomic # 6 Polarization: 9.16 SS G_CDS: 6.60 Total: 15.76 kcal
Atomic # 7 Polarization: -111.05 SS G_CDS: -6.84 Total: -117.89 kcal
Atomic # 8 Polarization: -21.91 SS G_CDS: -0.21 Total: -22.11 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal
Total: -70.04 2.57 -67.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001048843539.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.866 kcal
(2) G-P(sol) polarization free energy of solvation -70.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds