Wall clock time and date at job start Tue Mar 31 2020 19:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35511 * 116.99680 * 2 1 4 4 C 1.39213 * 120.90327 * 0.25304 * 3 2 1 5 5 C 1.37900 * 119.39040 * 180.23419 * 4 3 2 6 6 N 1.32083 * 121.28927 * 359.75757 * 5 4 3 7 7 C 1.32182 * 121.98085 * 0.02562 * 6 5 4 8 8 O 1.35422 * 119.77734 * 180.02562 * 7 6 5 9 9 C 1.40293 * 120.44533 * 359.97438 * 7 6 5 10 10 C 1.47231 * 120.65533 * 179.97438 * 9 7 6 11 11 O 1.21615 * 119.99871 * 89.99766 * 10 9 7 12 12 N 1.34775 * 119.99491 * 270.00015 * 10 9 7 13 13 C 1.46504 * 119.99344 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.49277 * 325.04713 * 13 12 10 15 15 C 1.52567 * 109.48729 * 204.99642 * 13 12 10 16 16 C 1.47100 * 114.32638 * 155.02181 * 15 13 12 17 17 C 1.54867 * 110.31821 * 62.80448 * 16 15 13 18 18 N 1.44576 * 109.57815 * 288.74676 * 17 16 15 19 19 C 1.36936 * 118.64501 * 270.71540 * 18 17 16 20 20 H 1.07998 * 119.99825 * 26.54553 * 19 18 17 21 21 C 1.38816 * 120.00147 * 206.54702 * 19 18 17 22 22 N 1.31620 * 120.00010 * 15.71271 * 21 19 18 23 23 Si 1.86801 * 120.00173 * 195.70570 * 21 19 18 24 24 H 1.48498 * 109.46655 * 90.00102 * 23 21 19 25 25 H 1.48493 * 109.47402 * 210.00226 * 23 21 19 26 26 H 1.48497 * 109.46980 * 330.00537 * 23 21 19 27 27 C 1.47583 * 122.73176 * 90.76402 * 18 17 16 28 28 C 1.50880 * 109.48926 * 85.11525 * 13 12 10 29 29 H 1.09000 * 109.47013 * 59.99866 * 1 2 3 30 30 H 1.08996 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47172 * 300.00363 * 1 2 3 32 32 H 1.08004 * 120.30106 * 359.97076 * 4 3 2 33 33 H 1.07999 * 119.35705 * 179.74258 * 5 4 3 34 34 H 0.96704 * 113.99808 * 269.98098 * 8 7 6 35 35 H 0.97003 * 120.00321 * 359.97438 * 12 10 9 36 36 H 1.09009 * 108.51355 * 33.77535 * 15 13 12 37 37 H 1.09000 * 108.51925 * 276.27830 * 15 13 12 38 38 H 1.09002 * 109.32725 * 302.54812 * 16 15 13 39 39 H 1.08994 * 109.18922 * 182.97739 * 16 15 13 40 40 H 1.09000 * 109.45067 * 48.76869 * 17 16 15 41 41 H 1.09000 * 109.44925 * 168.71914 * 17 16 15 42 42 H 0.97000 * 120.00099 * 179.97438 * 22 21 19 43 43 H 1.09004 * 108.94507 * 197.15215 * 27 18 17 44 44 H 1.08999 * 108.89440 * 78.46204 * 27 18 17 45 45 H 1.08997 * 109.36857 * 332.04484 * 28 13 12 46 46 H 1.09005 * 109.36868 * 91.78379 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3045 2.3867 0.0053 5 6 1.9626 3.5985 0.0002 6 7 3.2819 3.6626 -0.0048 7 6 4.0355 2.5767 -0.0057 8 8 5.3846 2.6943 -0.0104 9 6 3.4472 1.3031 -0.0008 10 6 4.2822 0.0904 -0.0023 11 8 4.6318 -0.4084 1.0503 12 7 4.6592 -0.4666 -1.1702 13 6 5.4905 -1.6729 -1.1717 14 1 6.1855 -1.6367 -0.3329 15 6 6.2737 -1.7497 -2.4788 16 6 7.5189 -2.5282 -2.3943 17 6 7.2073 -4.0049 -2.0468 18 7 6.7700 -4.0972 -0.6719 19 6 7.7113 -4.2818 0.3054 20 1 8.7244 -3.9411 0.1505 21 6 7.3634 -4.9068 1.4950 22 7 6.2421 -5.5913 1.5754 23 14 8.4867 -4.7765 2.9819 24 1 8.1082 -3.5863 3.7852 25 1 8.3506 -5.9990 3.8138 26 1 9.8942 -4.6405 2.5284 27 6 5.3510 -4.0019 -0.2778 28 6 4.6098 -2.8914 -1.0442 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2250 2.3528 0.0090 33 1 1.3882 4.5131 0.0001 34 1 5.7735 2.7269 -0.8952 35 1 4.3800 -0.0688 -2.0098 36 1 6.5202 -0.7359 -2.7946 37 1 5.6352 -2.1996 -3.2391 38 1 8.1585 -2.1028 -1.6209 39 1 8.0347 -2.4843 -3.3534 40 1 6.4197 -4.3739 -2.7037 41 1 8.1056 -4.6071 -2.1833 42 1 5.9991 -6.0284 2.4066 43 1 5.2937 -3.7934 0.7906 44 1 4.8640 -4.9561 -0.4785 45 1 3.7005 -2.6253 -0.5053 46 1 4.3479 -3.2538 -2.0383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052871240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:32 Heat of formation + Delta-G solvation = -76.529565 kcal Electronic energy + Delta-G solvation = -30238.850344 eV Core-core repulsion = 26129.078039 eV Total energy + Delta-G solvation = -4109.772305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19138 -40.72308 -39.89449 -39.09040 -37.87186 -36.33421 -34.53305 -33.25280 -32.66640 -32.02334 -31.39524 -28.48828 -27.87236 -26.21665 -25.24623 -24.81675 -23.92245 -21.99325 -21.57865 -21.00336 -20.30295 -18.82322 -18.61724 -18.55963 -18.26857 -17.50500 -17.01456 -16.75890 -16.35069 -16.16956 -16.01588 -15.71440 -15.52473 -15.25514 -15.05566 -14.81408 -14.38002 -14.16449 -14.02328 -13.71042 -13.61793 -13.23576 -13.02288 -12.94601 -12.79738 -12.57600 -12.54328 -12.47519 -12.16165 -12.02727 -11.76143 -11.54725 -11.42969 -11.35400 -11.28805 -10.59551 -10.45209 -10.17312 -10.11681 -10.05388 -8.65290 -7.86596 -5.31671 -0.32086 0.05647 1.38440 1.45144 1.47360 1.49433 1.87997 2.08057 2.42697 2.49296 2.66128 3.28135 3.48645 3.68075 3.73396 3.77623 3.83257 3.91250 4.08393 4.27040 4.33639 4.34991 4.38446 4.45739 4.47668 4.49478 4.67898 4.71623 4.81849 4.84656 4.94471 5.00918 5.15091 5.21667 5.24232 5.25076 5.34845 5.50413 5.57789 5.61894 5.69976 5.76347 6.05402 6.40799 6.43124 6.52503 6.78283 7.18156 7.22412 7.96392 8.34212 9.18345 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003510 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.036339 B = 7975.454523 C = 8098.443652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.207 3.793 4 C -0.258 4.258 5 C 0.177 3.823 6 N -0.541 5.541 7 C 0.376 3.624 8 O -0.488 6.488 9 C -0.256 4.256 10 C 0.577 3.423 11 O -0.580 6.580 12 N -0.697 5.697 13 C 0.163 3.837 14 H 0.048 0.952 15 C -0.101 4.101 16 C -0.132 4.132 17 C 0.147 3.853 18 N -0.604 5.604 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.954 3.046 24 H -0.300 1.300 25 H -0.290 1.290 26 H -0.261 1.261 27 C 0.197 3.803 28 C -0.130 4.130 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.213 0.787 34 H 0.424 0.576 35 H 0.412 0.588 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.246 0.754 43 H 0.024 0.976 44 H -0.003 1.003 45 H 0.044 0.956 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 19.485 -13.424 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.152 3.848 4 C -0.278 4.278 5 C 0.022 3.978 6 N -0.264 5.264 7 C 0.197 3.803 8 O -0.298 6.298 9 C -0.264 4.264 10 C 0.363 3.637 11 O -0.459 6.459 12 N -0.348 5.348 13 C 0.059 3.941 14 H 0.066 0.934 15 C -0.139 4.139 16 C -0.173 4.173 17 C 0.021 3.979 18 N -0.326 5.326 19 C -0.391 4.391 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.783 3.217 24 H -0.228 1.228 25 H -0.217 1.217 26 H -0.186 1.186 27 C 0.071 3.929 28 C -0.170 4.170 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.207 0.793 33 H 0.229 0.771 34 H 0.286 0.714 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.024 19.534 -12.022 26.884 hybrid contribution 0.048 -1.130 0.816 1.395 sum -13.976 18.403 -11.206 25.682 Atomic orbital electron populations 1.23602 0.74435 1.06191 1.03854 1.86123 1.25240 1.26247 1.86419 1.19334 0.89709 0.86541 0.89248 1.22556 1.03677 0.90873 1.10713 1.23224 0.87747 0.99093 0.87702 1.67407 1.08819 1.31252 1.18886 1.18839 0.84840 0.85510 0.91144 1.84722 1.14203 1.95115 1.35802 1.20264 0.92783 0.94531 1.18782 1.18004 0.78818 0.82971 0.83917 1.90868 1.56779 1.64609 1.33671 1.45983 1.52386 1.28470 1.07918 1.20231 0.91380 0.82596 0.99886 0.93390 1.20519 0.97109 1.01707 0.94580 1.21300 0.97147 0.97431 1.01399 1.20970 0.97649 0.94789 0.84484 1.43842 1.02413 1.83940 1.02454 1.19504 0.93035 1.30248 0.96333 0.91617 1.25706 0.99051 0.97728 1.02013 1.70204 1.26347 1.35758 1.25777 0.85452 0.79620 0.76284 0.80325 1.22756 1.21653 1.18570 1.20557 0.83137 0.92854 0.96321 1.22219 0.97830 0.96127 1.00796 0.89054 0.86995 0.90473 0.79313 0.77085 0.71404 0.75073 0.89928 0.90057 0.94460 0.88895 0.93260 0.94206 0.94508 0.95695 0.98461 0.93766 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.33 -7.90 10.03 -88.13 -0.88 -8.79 16 3 C 0.21 4.75 6.74 23.09 0.16 4.91 16 4 C -0.26 -3.47 9.09 22.42 0.20 -3.27 16 5 C 0.18 2.42 11.15 84.57 0.94 3.36 16 6 N -0.54 -11.83 10.37 -308.28 -3.20 -15.03 16 7 C 0.38 9.88 7.77 85.14 0.66 10.54 16 8 O -0.49 -12.76 13.01 -87.17 -1.13 -13.90 16 9 C -0.26 -7.40 5.66 -19.83 -0.11 -7.51 16 10 C 0.58 21.43 6.24 86.61 0.54 21.97 16 11 O -0.58 -29.53 16.77 -4.08 -0.07 -29.60 16 12 N -0.70 -21.13 4.93 -449.99 -2.22 -23.35 16 13 C 0.16 6.01 2.06 44.16 0.09 6.10 16 14 H 0.05 2.36 6.92 -2.39 -0.02 2.34 16 15 C -0.10 -2.81 4.69 28.62 0.13 -2.67 16 16 C -0.13 -4.24 5.74 29.40 0.17 -4.07 16 17 C 0.15 5.96 5.66 87.38 0.49 6.45 16 18 N -0.60 -31.44 2.27 -698.42 -1.58 -33.02 16 19 C -0.26 -15.21 9.44 84.03 0.79 -14.42 16 20 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -3.02 4.87 84.86 0.41 -2.60 16 22 N -0.93 -59.60 11.01 21.65 0.24 -59.36 16 23 Si 0.95 49.38 29.58 68.60 2.03 51.41 16 24 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 25 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.20 10.44 4.67 86.49 0.40 10.85 16 28 C -0.13 -5.30 5.39 30.22 0.16 -5.14 16 29 H 0.09 0.50 7.72 -2.39 -0.02 0.48 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 0.65 7.70 -2.39 -0.02 0.63 16 32 H 0.19 0.90 6.45 -2.91 -0.02 0.88 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.42 6.28 9.06 -74.05 -0.67 5.61 16 35 H 0.41 8.75 8.59 -92.71 -0.80 7.95 16 36 H 0.08 1.78 8.04 -2.38 -0.02 1.76 16 37 H 0.08 1.89 7.36 -2.39 -0.02 1.88 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.82 8.07 -2.39 -0.02 1.80 16 41 H 0.04 1.64 7.99 -2.39 -0.02 1.62 16 42 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.02 1.56 6.33 -2.38 -0.02 1.54 16 44 H 0.00 -0.15 8.03 -2.39 -0.02 -0.17 16 45 H 0.04 1.90 7.85 -2.39 -0.02 1.88 16 46 H 0.08 2.64 7.32 -2.38 -0.02 2.63 16 Total: -1.00 -91.37 374.37 -1.09 -92.46 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.44 Total: 13.41 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.17 Total: 25.76 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -6.76 Total: -130.75 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.09 Total: -52.29 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.41 kcal Total: -91.37 -1.09 -92.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052871240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.933 kcal (2) G-P(sol) polarization free energy of solvation -91.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds