Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35733 * 116.99725 * 2 1 4 4 C 1.41862 * 126.78308 * 180.02562 * 3 2 1 5 5 C 1.36665 * 103.81032 * 179.97438 * 4 3 2 6 6 C 1.47537 * 126.88040 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99920 * 6.50807 * 6 5 4 8 8 N 1.34776 * 119.99927 * 186.51255 * 6 5 4 9 9 C 1.46949 * 120.71683 * 175.70550 * 8 6 5 10 10 C 1.53187 * 108.89596 * 234.30864 * 9 8 6 11 11 C 1.53178 * 109.28211 * 304.61101 * 10 9 8 12 12 C 1.52071 * 109.73700 * 59.92016 * 11 10 9 13 13 C 1.54363 * 110.58842 * 177.70716 * 12 11 10 14 14 C 1.54456 * 102.86852 * 207.24555 * 13 12 11 15 15 N 1.47084 * 107.30203 * 21.47540 * 14 13 12 16 16 C 1.36932 * 125.63406 * 180.71951 * 15 14 13 17 17 H 1.08001 * 120.00382 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99650 * 0.02562 * 16 15 14 19 19 N 1.31623 * 120.00200 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99972 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47000 * 60.00435 * 20 18 16 22 22 H 1.48496 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46871 * 300.00169 * 20 18 16 24 24 C 1.47593 * 108.74268 * 0.98736 * 15 14 13 25 25 C 1.47098 * 120.72171 * 355.67759 * 8 6 5 26 26 O 1.34660 * 106.24075 * 0.22699 * 5 4 3 27 27 N 1.20883 * 111.63401 * 359.59405 * 26 5 4 28 28 H 1.08996 * 109.47146 * 60.00158 * 1 2 3 29 29 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47076 * 299.99752 * 1 2 3 31 31 H 1.07994 * 128.09332 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.56918 * 114.48864 * 9 8 6 33 33 H 1.08997 * 109.66551 * 354.19178 * 9 8 6 34 34 H 1.08998 * 109.50889 * 184.66549 * 10 9 8 35 35 H 1.09004 * 109.50607 * 64.55026 * 10 9 8 36 36 H 1.09001 * 109.42473 * 299.84837 * 11 10 9 37 37 H 1.08994 * 109.38640 * 179.97438 * 11 10 9 38 38 H 1.09001 * 110.73063 * 88.89956 * 13 12 11 39 39 H 1.09006 * 110.73456 * 325.59116 * 13 12 11 40 40 H 1.08995 * 109.88136 * 262.05173 * 14 13 12 41 41 H 1.09000 * 110.00368 * 140.97063 * 14 13 12 42 42 H 0.97004 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.08995 * 110.37574 * 95.53546 * 24 15 14 44 44 H 1.09000 * 110.37110 * 217.88979 * 24 15 14 45 45 H 1.09001 * 109.56365 * 7.97803 * 25 8 6 46 46 H 1.09003 * 109.56793 * 247.62494 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7784 3.6142 -0.0009 7 8 5.8566 3.0652 -0.1200 8 7 4.7153 4.9540 0.1311 9 6 5.9420 5.7574 0.2273 10 6 5.8749 6.6155 1.4945 11 6 4.5932 7.4540 1.4703 12 6 3.3810 6.5375 1.4132 13 6 2.0758 7.3610 1.4458 14 6 1.0649 6.3786 2.0771 15 7 1.8387 5.3703 2.8173 16 6 1.3137 4.3117 3.5093 17 1 1.9691 3.6238 4.0229 18 6 -0.0608 4.1226 3.5506 19 7 -0.8596 4.9606 2.9243 20 14 -0.7772 2.6789 4.4952 21 1 -0.3858 2.7792 5.9242 22 1 -2.2578 2.7006 4.3844 23 1 -0.2573 1.4091 3.9275 24 6 3.2742 5.6914 2.6966 25 6 3.4171 5.6439 0.1814 26 8 2.2758 3.2802 0.0046 27 7 1.4685 2.3805 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.2442 0.7262 -0.0006 32 1 6.0250 6.4032 -0.6468 33 1 6.8089 5.0986 0.2781 34 1 6.7411 7.2761 1.5331 35 1 5.8703 5.9690 2.3721 36 1 4.5998 8.1012 0.5933 37 1 4.5435 8.0650 2.3715 38 1 1.7680 7.6363 0.4371 39 1 2.1940 8.2470 2.0697 40 1 0.4795 5.8955 1.2948 41 1 0.4029 6.9119 2.7593 42 1 -1.8201 4.8283 2.9529 43 1 3.6081 6.2673 3.5597 44 1 3.8605 4.7778 2.5988 45 1 2.6149 4.9083 0.2405 46 1 3.2919 6.2520 -0.7146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054120035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = 42.818722 kcal Electronic energy + Delta-G solvation = -31773.080327 eV Core-core repulsion = 27668.483352 eV Total energy + Delta-G solvation = -4104.596975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.65190 -40.36540 -38.60277 -38.47609 -35.74604 -33.30041 -32.90153 -32.49840 -31.16597 -29.98536 -28.41301 -27.48053 -25.94041 -25.67438 -24.11291 -23.27580 -22.89679 -21.56898 -20.41432 -19.88180 -18.72370 -17.74174 -17.59862 -16.85408 -16.76874 -16.14758 -15.71011 -15.40241 -15.10144 -14.85640 -14.68638 -14.40559 -14.07290 -13.95480 -13.51407 -13.38000 -13.11461 -12.87749 -12.46403 -12.26912 -12.01285 -11.82683 -11.73994 -11.66344 -11.11211 -11.09633 -11.02529 -10.84667 -10.82005 -10.69159 -10.23148 -10.16440 -10.00208 -9.83594 -9.68804 -9.61007 -9.54354 -9.01013 -8.57057 -8.54543 -6.76861 -5.66530 -2.98136 1.03211 2.43839 2.66559 2.88217 3.12568 3.38711 3.41701 3.43662 3.44569 4.36034 4.52123 4.60418 4.93440 4.96723 5.01980 5.10265 5.15363 5.22840 5.30993 5.33422 5.43944 5.52046 5.57594 5.60061 5.65375 5.66297 5.81458 5.82344 5.90816 5.97361 6.00720 6.12967 6.22040 6.33514 6.36608 6.52628 6.59027 6.65944 6.72296 6.86844 7.15677 7.28859 7.59745 7.66549 7.87304 7.96192 8.30707 8.49155 9.27297 9.87744 10.53676 11.44969 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.006909 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.895113 B = 4051.506799 C = 6238.128600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.286 6.286 3 C 0.191 3.809 4 C -0.155 4.155 5 C -0.067 4.067 6 C 0.611 3.389 7 O -0.525 6.525 8 N -0.592 5.592 9 C 0.114 3.886 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.087 4.087 13 C -0.134 4.134 14 C 0.178 3.822 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.070 0.930 18 C 0.001 3.999 19 N -0.916 5.916 20 Si 0.899 3.101 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.151 3.849 25 C 0.110 3.890 26 O 0.146 5.854 27 N -0.363 5.363 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.184 0.816 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.018 0.982 44 H 0.032 0.968 45 H 0.119 0.881 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 1.127 -8.361 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.193 6.193 3 C -0.006 4.006 4 C -0.178 4.178 5 C -0.133 4.133 6 C 0.397 3.603 7 O -0.403 6.403 8 N -0.323 5.323 9 C -0.008 4.008 10 C -0.174 4.174 11 C -0.140 4.140 12 C -0.089 4.089 13 C -0.173 4.173 14 C 0.053 3.947 15 N -0.326 5.326 16 C -0.350 4.350 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.564 5.564 20 Si 0.730 3.270 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.024 3.976 25 C -0.012 4.012 26 O 0.078 5.922 27 N -0.083 5.083 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.201 0.799 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.136 0.864 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.289 0.827 -8.384 11.819 hybrid contribution -0.234 -1.147 0.752 1.391 sum 8.056 -0.320 -7.632 11.101 Atomic orbital electron populations 1.23066 0.76763 1.03703 1.02879 1.86134 1.22633 1.20694 1.89827 1.21802 0.90356 0.85959 1.02508 1.22003 0.94407 0.94664 1.06752 1.23818 0.87565 0.93620 1.08345 1.16569 0.85273 0.81433 0.77012 1.90812 1.27225 1.71016 1.51198 1.48036 1.08822 1.05165 1.70279 1.21664 0.86885 0.94063 0.98170 1.21965 0.98428 0.98814 0.98152 1.21357 0.93298 0.97212 1.02109 1.21384 0.95436 0.95889 0.96183 1.22850 0.95239 0.98614 1.00551 1.21181 0.90672 0.87971 0.94882 1.44441 0.99083 1.29092 1.59988 1.18841 0.90168 1.01698 1.24276 0.91235 1.24646 0.95944 0.98527 1.00482 1.69926 1.02637 1.37202 1.46629 0.86398 0.78183 0.82553 0.79862 1.21278 1.21561 1.21502 1.21418 0.87873 0.95537 0.92733 1.22182 0.84159 0.97367 0.97475 1.85154 1.11381 1.28496 1.67165 1.74101 1.16240 0.96530 1.21400 0.92281 0.87958 0.91726 0.79866 0.91112 0.88970 0.90759 0.91049 0.91979 0.91375 0.92004 0.92014 0.93406 0.94030 0.93896 0.96457 0.94943 0.86367 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.73 101.05 1.08 1.53 16 2 O -0.29 -4.81 10.57 -18.91 -0.20 -5.01 16 3 C 0.19 3.50 8.00 -16.72 -0.13 3.37 16 4 C -0.16 -2.60 10.98 -38.76 -0.43 -3.03 16 5 C -0.07 -1.19 6.98 -36.36 -0.25 -1.44 16 6 C 0.61 10.21 7.70 -12.47 -0.10 10.11 16 7 O -0.53 -9.39 16.35 5.30 0.09 -9.30 16 8 N -0.59 -8.70 2.60 -174.43 -0.45 -9.16 16 9 C 0.11 1.34 6.40 -3.70 -0.02 1.31 16 10 C -0.14 -1.50 5.93 -26.54 -0.16 -1.66 16 11 C -0.10 -1.24 4.64 -27.11 -0.13 -1.36 16 12 C -0.09 -1.37 0.55 -154.10 -0.08 -1.45 16 13 C -0.13 -2.27 5.89 -25.25 -0.15 -2.42 16 14 C 0.18 4.07 5.11 -2.96 -0.02 4.06 16 15 N -0.60 -14.56 3.33 -170.32 -0.57 -15.12 16 16 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 18 C 0.00 0.01 5.49 -17.43 -0.10 -0.08 16 19 N -0.92 -26.30 10.31 55.49 0.57 -25.73 16 20 Si 0.90 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 C 0.15 2.99 5.20 -2.87 -0.01 2.98 16 25 C 0.11 1.70 4.89 -4.11 -0.02 1.68 16 26 O 0.15 2.85 7.74 15.50 0.12 2.97 16 27 N -0.36 -7.36 11.50 30.47 0.35 -7.01 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.18 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.11 7.03 -51.93 -0.37 0.75 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.92 7.40 -51.93 -0.38 0.53 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 39 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 40 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 41 H 0.04 1.08 7.48 -51.93 -0.39 0.69 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.36 7.97 -51.93 -0.41 -0.06 16 44 H 0.03 0.68 7.65 -51.93 -0.40 0.28 16 45 H 0.12 2.19 3.61 -54.57 -0.20 1.99 16 46 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -31.54 365.82 -6.98 -38.52 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.71 Total: -0.39 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.67 Total: 7.37 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.10 Total: -57.02 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.01 Total: -11.34 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.54 -6.98 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054120035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.338 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds