Wall clock time and date at job start Tue Mar 31 2020 19:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35733 * 116.99725 * 2 1 4 4 C 1.41862 * 126.78308 * 180.02562 * 3 2 1 5 5 C 1.36665 * 103.81032 * 179.97438 * 4 3 2 6 6 C 1.47537 * 126.88040 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99920 * 6.50807 * 6 5 4 8 8 N 1.34776 * 119.99927 * 186.51255 * 6 5 4 9 9 C 1.46949 * 120.71683 * 175.70550 * 8 6 5 10 10 C 1.53187 * 108.89596 * 234.30864 * 9 8 6 11 11 C 1.53178 * 109.28211 * 304.61101 * 10 9 8 12 12 C 1.52071 * 109.73700 * 59.92016 * 11 10 9 13 13 C 1.54363 * 110.58842 * 177.70716 * 12 11 10 14 14 C 1.54456 * 102.86852 * 207.24555 * 13 12 11 15 15 N 1.47084 * 107.30203 * 21.47540 * 14 13 12 16 16 C 1.36932 * 125.63406 * 180.71951 * 15 14 13 17 17 H 1.08001 * 120.00382 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99650 * 0.02562 * 16 15 14 19 19 N 1.31623 * 120.00200 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99972 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47000 * 60.00435 * 20 18 16 22 22 H 1.48496 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.46871 * 300.00169 * 20 18 16 24 24 C 1.47593 * 108.74268 * 0.98736 * 15 14 13 25 25 C 1.47098 * 120.72171 * 355.67759 * 8 6 5 26 26 O 1.34660 * 106.24075 * 0.22699 * 5 4 3 27 27 N 1.20883 * 111.63401 * 359.59405 * 26 5 4 28 28 H 1.08996 * 109.47146 * 60.00158 * 1 2 3 29 29 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47076 * 299.99752 * 1 2 3 31 31 H 1.07994 * 128.09332 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.56918 * 114.48864 * 9 8 6 33 33 H 1.08997 * 109.66551 * 354.19178 * 9 8 6 34 34 H 1.08998 * 109.50889 * 184.66549 * 10 9 8 35 35 H 1.09004 * 109.50607 * 64.55026 * 10 9 8 36 36 H 1.09001 * 109.42473 * 299.84837 * 11 10 9 37 37 H 1.08994 * 109.38640 * 179.97438 * 11 10 9 38 38 H 1.09001 * 110.73063 * 88.89956 * 13 12 11 39 39 H 1.09006 * 110.73456 * 325.59116 * 13 12 11 40 40 H 1.08995 * 109.88136 * 262.05173 * 14 13 12 41 41 H 1.09000 * 110.00368 * 140.97063 * 14 13 12 42 42 H 0.97004 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.08995 * 110.37574 * 95.53546 * 24 15 14 44 44 H 1.09000 * 110.37110 * 217.88979 * 24 15 14 45 45 H 1.09001 * 109.56365 * 7.97803 * 25 8 6 46 46 H 1.09003 * 109.56793 * 247.62494 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7784 3.6142 -0.0009 7 8 5.8566 3.0652 -0.1200 8 7 4.7153 4.9540 0.1311 9 6 5.9420 5.7574 0.2273 10 6 5.8749 6.6155 1.4945 11 6 4.5932 7.4540 1.4703 12 6 3.3810 6.5375 1.4132 13 6 2.0758 7.3610 1.4458 14 6 1.0649 6.3786 2.0771 15 7 1.8387 5.3703 2.8173 16 6 1.3137 4.3117 3.5093 17 1 1.9691 3.6238 4.0229 18 6 -0.0608 4.1226 3.5506 19 7 -0.8596 4.9606 2.9243 20 14 -0.7772 2.6789 4.4952 21 1 -0.3858 2.7792 5.9242 22 1 -2.2578 2.7006 4.3844 23 1 -0.2573 1.4091 3.9275 24 6 3.2742 5.6914 2.6966 25 6 3.4171 5.6439 0.1814 26 8 2.2758 3.2802 0.0046 27 7 1.4685 2.3805 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.2442 0.7262 -0.0006 32 1 6.0250 6.4032 -0.6468 33 1 6.8089 5.0986 0.2781 34 1 6.7411 7.2761 1.5331 35 1 5.8703 5.9690 2.3721 36 1 4.5998 8.1012 0.5933 37 1 4.5435 8.0650 2.3715 38 1 1.7680 7.6363 0.4371 39 1 2.1940 8.2470 2.0697 40 1 0.4795 5.8955 1.2948 41 1 0.4029 6.9119 2.7593 42 1 -1.8201 4.8283 2.9529 43 1 3.6081 6.2673 3.5597 44 1 3.8605 4.7778 2.5988 45 1 2.6149 4.9083 0.2405 46 1 3.2919 6.2520 -0.7146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054120035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:27 Heat of formation + Delta-G solvation = 21.042166 kcal Electronic energy + Delta-G solvation = -31774.024629 eV Core-core repulsion = 27668.483352 eV Total energy + Delta-G solvation = -4105.541277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.07177 -41.61745 -39.92047 -39.87069 -37.21792 -34.79300 -34.29554 -33.95880 -32.57264 -31.67132 -29.95595 -28.70258 -27.47533 -27.07291 -25.63777 -24.67075 -24.23222 -22.86292 -21.97617 -21.34274 -20.02918 -19.04811 -18.96123 -18.77240 -18.13228 -17.42561 -17.00996 -16.77983 -16.68372 -16.36446 -15.94537 -15.88732 -15.67156 -15.30414 -14.93035 -14.66596 -14.41191 -13.98938 -13.90798 -13.69313 -13.49212 -13.24049 -13.17814 -12.96631 -12.91269 -12.78444 -12.49053 -12.38430 -12.10463 -12.07932 -11.84502 -11.76844 -11.64240 -11.38083 -11.14274 -10.98365 -10.94847 -10.64362 -10.41525 -9.72416 -8.79492 -7.80974 -5.11796 -0.32422 1.02708 1.35689 1.36464 1.42608 1.43262 1.56846 1.82367 2.16163 2.46514 3.00770 3.34825 3.37353 3.67614 3.68819 3.83628 3.86490 4.00979 4.04323 4.14795 4.16206 4.23942 4.24790 4.39778 4.47630 4.51735 4.58045 4.68585 4.78138 4.86081 4.87704 4.91854 4.99492 5.04216 5.18941 5.20772 5.25050 5.41127 5.45128 5.52305 5.57952 5.79242 5.81983 5.88510 6.06080 6.26265 6.70594 7.09915 7.17267 7.85288 8.48759 9.28257 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.006909 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.895113 B = 4051.506799 C = 6238.128600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.185 3.815 4 C -0.154 4.154 5 C -0.075 4.075 6 C 0.609 3.391 7 O -0.540 6.540 8 N -0.584 5.584 9 C 0.109 3.891 10 C -0.129 4.129 11 C -0.096 4.096 12 C -0.073 4.073 13 C -0.118 4.118 14 C 0.186 3.814 15 N -0.615 5.615 16 C -0.226 4.226 17 H 0.060 0.940 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.948 3.052 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.150 3.850 25 C 0.109 3.891 26 O 0.135 5.865 27 N -0.398 5.398 28 H 0.063 0.937 29 H 0.144 0.856 30 H 0.036 0.964 31 H 0.208 0.792 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.012 0.988 41 H 0.002 0.998 42 H 0.243 0.757 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.088 0.912 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.323 2.384 -9.388 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.195 6.195 3 C -0.012 4.012 4 C -0.177 4.177 5 C -0.141 4.141 6 C 0.394 3.606 7 O -0.419 6.419 8 N -0.314 5.314 9 C -0.011 4.011 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.157 4.157 14 C 0.062 3.938 15 N -0.341 5.341 16 C -0.355 4.355 17 H 0.078 0.922 18 C -0.241 4.241 19 N -0.586 5.586 20 Si 0.778 3.222 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.025 3.975 25 C -0.014 4.014 26 O 0.069 5.931 27 N -0.120 5.120 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.055 0.945 31 H 0.225 0.775 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.020 0.980 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.105 0.895 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.532 2.120 -9.403 14.277 hybrid contribution -0.900 -1.561 1.102 2.112 sum 9.633 0.559 -8.301 12.728 Atomic orbital electron populations 1.23279 0.75540 1.06075 1.01712 1.86144 1.23842 1.19920 1.89622 1.22127 0.91124 0.86063 1.01913 1.22356 0.94322 0.94948 1.06038 1.24249 0.87537 0.94327 1.07944 1.16527 0.84551 0.82139 0.77374 1.90799 1.27343 1.71386 1.52399 1.48128 1.09736 1.04592 1.68959 1.21986 0.85129 0.94096 0.99928 1.21953 0.99368 0.98705 0.96713 1.21358 0.91351 0.96689 1.03960 1.21321 0.96803 0.95537 0.93780 1.22726 0.93798 0.97463 1.01708 1.20927 0.91659 0.88261 0.93001 1.44645 1.01347 1.28611 1.59526 1.19003 0.90280 1.02352 1.23887 0.92202 1.25237 0.96404 1.00675 1.01831 1.70121 1.02156 1.38406 1.47869 0.85614 0.77398 0.80182 0.79000 1.20660 1.21532 1.21606 1.21552 0.85042 0.95728 0.95196 1.22165 0.83652 0.96889 0.98676 1.85193 1.11943 1.28371 1.67608 1.74064 1.17460 0.97439 1.23077 0.91779 0.83797 0.94535 0.77478 0.87799 0.89300 0.87149 0.93388 0.88680 0.90889 0.89301 0.90306 0.97006 0.97992 0.94699 0.96396 0.96342 0.89495 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.73 113.37 1.22 2.03 16 2 O -0.29 -9.72 10.57 -90.57 -0.96 -10.68 16 3 C 0.18 6.93 8.00 85.78 0.69 7.61 16 4 C -0.15 -5.19 10.98 22.80 0.25 -4.94 16 5 C -0.07 -2.66 6.98 24.36 0.17 -2.49 16 6 C 0.61 19.77 7.70 86.70 0.67 20.44 16 7 O -0.54 -18.69 16.35 -3.96 -0.06 -18.75 16 8 N -0.58 -15.87 2.60 -824.05 -2.15 -18.02 16 9 C 0.11 2.13 6.40 86.36 0.55 2.68 16 10 C -0.13 -2.33 5.93 30.72 0.18 -2.15 16 11 C -0.10 -1.88 4.64 30.35 0.14 -1.73 16 12 C -0.07 -2.11 0.55 -51.91 -0.03 -2.14 16 13 C -0.12 -3.77 5.89 31.55 0.19 -3.58 16 14 C 0.19 8.76 5.11 86.76 0.44 9.20 16 15 N -0.62 -30.64 3.33 -692.78 -2.31 -32.95 16 16 C -0.23 -12.79 10.28 84.03 0.86 -11.93 16 17 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 18 C -0.05 -2.74 5.49 84.86 0.47 -2.27 16 19 N -0.94 -56.09 10.31 21.65 0.22 -55.86 16 20 Si 0.95 47.38 29.55 68.60 2.03 49.40 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 24 C 0.15 5.91 5.20 86.54 0.45 6.36 16 25 C 0.11 3.12 4.89 86.01 0.42 3.54 16 26 O 0.13 5.42 7.74 65.65 0.51 5.93 16 27 N -0.40 -16.78 11.50 -172.01 -1.98 -18.76 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.21 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.86 7.03 -2.39 -0.02 1.84 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.10 7.40 -2.38 -0.02 1.09 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.09 2.39 7.99 -2.39 -0.02 2.37 16 39 H 0.08 2.28 8.00 -2.38 -0.02 2.26 16 40 H 0.01 0.63 7.40 -2.39 -0.02 0.61 16 41 H 0.00 0.10 7.48 -2.39 -0.02 0.08 16 42 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.02 0.72 7.97 -2.39 -0.02 0.70 16 44 H 0.02 0.77 7.65 -2.39 -0.02 0.75 16 45 H 0.09 3.22 3.61 -44.29 -0.16 3.06 16 46 H 0.10 2.34 8.12 -2.39 -0.02 2.32 16 Total: -1.00 -73.10 365.82 2.81 -70.29 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.84 Total: 8.78 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.67 Total: 20.63 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -6.21 Total: -125.60 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.51 Total: -23.50 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -73.10 2.81 -70.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054120035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.330 kcal (2) G-P(sol) polarization free energy of solvation -73.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds