Wall clock time and date at job start Tue Mar 31 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35703 * 119.44405 * 2 1 4 4 C 1.35257 * 121.00337 * 180.02562 * 3 2 1 5 5 C 1.41156 * 119.86829 * 359.97438 * 4 3 2 6 6 C 1.48457 * 120.53681 * 179.97438 * 5 4 3 7 7 O 1.21470 * 119.99875 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00138 * 0.02562 * 6 5 4 9 9 C 1.46503 * 120.00049 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.09002 * 108.45330 * 57.87787 * 10 9 8 12 12 C 1.47486 * 108.54728 * 175.84817 * 10 9 8 13 13 N 1.50125 * 106.48513 * 178.01130 * 12 10 9 14 14 C 1.36929 * 120.63754 * 111.36996 * 13 12 10 15 15 H 1.07999 * 120.00213 * 155.82262 * 14 13 12 16 16 C 1.38811 * 119.99950 * 335.82695 * 14 13 12 17 17 N 1.31617 * 120.00151 * 340.44346 * 16 14 13 18 18 Si 1.86801 * 120.00034 * 160.44245 * 16 14 13 19 19 H 1.48494 * 109.47175 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47257 * 300.00362 * 18 16 14 21 21 H 1.48504 * 109.47190 * 59.99826 * 18 16 14 22 22 C 1.43425 * 118.72616 * 291.09709 * 13 12 10 23 23 C 1.55336 * 116.23732 * 89.62503 * 22 13 12 24 24 C 1.55181 * 108.87527 * 319.46297 * 23 22 13 25 25 O 1.39639 * 110.56783 * 322.14149 * 24 23 22 26 26 C 1.38285 * 118.92244 * 0.25202 * 5 4 3 27 27 C 1.34594 * 119.43945 * 180.02562 * 2 1 3 28 28 O 1.22013 * 119.96495 * 0.02562 * 27 2 1 29 29 H 1.08993 * 109.47354 * 89.99754 * 1 2 3 30 30 H 1.09004 * 109.47029 * 210.00253 * 1 2 3 31 31 H 1.09003 * 109.46903 * 329.99863 * 1 2 3 32 32 H 1.08000 * 119.49563 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.06518 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99838 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47027 * 59.99740 * 9 8 6 36 36 H 1.09002 * 109.46850 * 299.99673 * 9 8 6 37 37 H 1.08995 * 110.11648 * 58.80095 * 12 10 9 38 38 H 1.08997 * 110.15233 * 297.23722 * 12 10 9 39 39 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 40 40 H 1.08997 * 108.12625 * 211.38277 * 22 13 12 41 41 H 1.08999 * 108.12979 * 328.08579 * 22 13 12 42 42 H 1.08998 * 109.56591 * 79.28523 * 23 22 13 43 43 H 1.09002 * 109.56988 * 199.64262 * 23 22 13 44 44 H 1.09004 * 109.25672 * 82.42923 * 24 23 22 45 45 H 1.09006 * 109.25717 * 201.89719 * 24 23 22 46 46 H 1.08001 * 120.48960 * 179.74799 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.1818 0.0000 4 6 3.4841 1.2186 -0.0005 5 6 4.2201 0.0141 -0.0005 6 6 5.7045 0.0372 -0.0017 7 8 6.3281 -1.0052 -0.0021 8 7 6.3602 1.2147 -0.0022 9 6 7.8251 1.2375 -0.0027 10 6 8.3126 2.6877 -0.0039 11 1 7.9017 3.1905 0.8716 12 6 9.7840 2.6881 0.0968 13 7 10.2143 4.1253 0.0419 14 6 10.7498 4.7359 1.1444 15 1 11.3980 5.5916 1.0263 16 6 10.4596 4.2550 2.4138 17 7 9.4047 3.4909 2.6028 18 14 11.5661 4.6924 3.8538 19 1 11.0428 4.0585 5.0905 20 1 12.9415 4.1990 3.5890 21 1 11.5941 6.1671 4.0266 22 6 10.0593 4.8448 -1.1891 23 6 8.7052 5.5790 -1.3895 24 6 7.5598 4.6710 -0.8683 25 8 7.8176 3.3328 -1.1727 26 6 3.5360 -1.1877 -0.0053 27 6 2.1265 -1.1721 -0.0005 28 8 1.5055 -2.2224 -0.0015 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.5748 2.1069 0.0004 33 1 3.9996 2.1676 -0.0009 34 1 5.8622 2.0471 -0.0014 35 1 8.1960 0.7291 -0.8927 36 1 8.1966 0.7296 0.8873 37 1 10.2170 2.1374 -0.7382 38 1 10.0959 2.2416 1.0409 39 1 9.2021 3.1545 3.4898 40 1 10.8583 5.5834 -1.2531 41 1 10.1848 4.1407 -2.0116 42 1 8.7116 6.5153 -0.8315 43 1 8.5547 5.7846 -2.4493 44 1 7.4749 4.7840 0.2125 45 1 6.6220 4.9712 -1.3359 46 1 4.0738 -2.1243 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073664775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:06 Heat of formation + Delta-G solvation = -41.179836 kcal Electronic energy + Delta-G solvation = -29455.515587 eV Core-core repulsion = 25347.276162 eV Total energy + Delta-G solvation = -4108.239426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57706 -39.68850 -38.78310 -37.10229 -35.09073 -34.70216 -34.65625 -32.22511 -31.21839 -30.16815 -28.95375 -28.06809 -25.83950 -25.37306 -24.12547 -23.55785 -22.45880 -20.91300 -20.29981 -19.64937 -18.25892 -17.69673 -17.21832 -16.93393 -16.36143 -16.08837 -15.87020 -15.53460 -14.93570 -14.88835 -14.53436 -14.39352 -14.25053 -13.93405 -13.56379 -13.39089 -13.24122 -13.04574 -12.92803 -12.65571 -12.36717 -12.15208 -11.99934 -11.93644 -11.46136 -11.27865 -10.88604 -10.79143 -10.54263 -10.51150 -10.27263 -10.22347 -10.01690 -9.85370 -9.71951 -9.56818 -8.87537 -8.79525 -8.54925 -8.25837 -6.87228 -5.96824 -3.34854 0.26793 1.42562 2.31833 2.83275 3.22002 3.31120 3.38162 3.40308 3.59890 4.20421 4.32644 4.39950 4.54829 4.65501 4.79000 4.86224 4.87509 5.04598 5.18651 5.22647 5.24057 5.51329 5.64961 5.74264 5.76285 5.85528 5.93567 5.96483 6.06529 6.13897 6.26176 6.34087 6.40071 6.46876 6.61038 6.63543 6.72093 6.75740 6.83445 6.90545 7.05078 7.27405 7.64424 7.67705 7.71115 8.06080 8.27196 8.29135 9.02603 9.70857 10.24852 11.12425 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002739 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.826255 B =10221.341265 C =10689.607442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.497 5.497 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.027 4.027 6 C 0.547 3.453 7 O -0.532 6.532 8 N -0.701 5.701 9 C 0.119 3.881 10 C 0.061 3.939 11 H 0.108 0.892 12 C 0.143 3.857 13 N -0.588 5.588 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.908 5.908 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.161 3.839 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 C -0.174 4.174 27 C 0.512 3.488 28 O -0.547 6.547 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.105 0.895 39 H 0.256 0.744 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.777 0.177 -5.378 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.209 5.209 3 C 0.002 3.998 4 C -0.233 4.233 5 C -0.034 4.034 6 C 0.332 3.668 7 O -0.410 6.410 8 N -0.351 5.351 9 C -0.005 4.005 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.018 3.982 13 N -0.308 5.308 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.553 5.553 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.032 3.968 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.288 6.288 26 C -0.197 4.197 27 C 0.314 3.686 28 O -0.429 6.429 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.777 -1.395 -5.393 16.732 hybrid contribution 0.291 1.103 1.007 1.522 sum -15.486 -0.292 -4.386 16.098 Atomic orbital electron populations 1.22188 0.77049 1.05098 1.04002 1.45381 1.09446 1.06821 1.59285 1.21820 0.93530 0.89370 0.95060 1.20727 0.92590 0.98722 1.11223 1.20594 0.94074 0.93834 0.94860 1.18275 0.86521 0.84335 0.77690 1.90771 1.68401 1.32226 1.49561 1.45860 1.08501 1.07800 1.72941 1.21811 0.77780 0.98550 1.02367 1.22327 0.98236 0.90696 0.88528 0.87486 1.20868 0.90869 0.85605 1.00855 1.44088 1.71877 1.06097 1.08734 1.19218 1.21372 1.13060 0.84246 0.91342 1.24877 0.96769 1.00522 0.97313 1.69849 1.24670 1.38816 1.21980 0.86338 0.80646 0.77919 0.81686 1.21626 1.21080 1.21053 1.20371 0.93202 0.94293 0.88980 1.23581 0.99390 0.99337 0.99026 1.22351 0.95645 0.82854 1.00247 1.87522 1.84122 1.21814 1.35355 1.22723 0.92069 0.99822 1.05121 1.17096 0.88918 0.82856 0.79735 1.90959 1.69386 1.29745 1.52825 0.90472 0.88719 0.89501 0.81466 0.83198 0.76343 0.91584 0.89970 0.96128 0.87737 0.93388 0.94881 0.94993 0.92494 0.93168 0.91873 0.93085 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.34 59.85 0.62 0.95 16 2 N -0.50 -4.47 2.98 -127.14 -0.38 -4.85 16 3 C 0.13 0.88 10.25 -16.90 -0.17 0.70 16 4 C -0.21 -1.86 9.51 -39.54 -0.38 -2.24 16 5 C -0.03 -0.34 5.91 -104.56 -0.62 -0.96 16 6 C 0.55 8.54 7.80 -12.05 -0.09 8.44 16 7 O -0.53 -10.18 16.39 5.39 0.09 -10.10 16 8 N -0.70 -10.45 5.39 -61.05 -0.33 -10.77 16 9 C 0.12 2.07 5.24 -4.04 -0.02 2.04 16 10 C 0.06 1.16 1.95 -29.39 -0.06 1.10 16 11 H 0.11 2.29 5.27 -51.93 -0.27 2.01 16 12 C 0.14 3.10 4.75 -4.67 -0.02 3.08 16 13 N -0.59 -13.56 2.60 -174.20 -0.45 -14.02 16 14 C -0.25 -6.30 9.62 -15.06 -0.14 -6.45 16 15 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 17 N -0.91 -22.85 9.59 55.49 0.53 -22.32 16 18 Si 0.90 20.39 29.60 -169.99 -5.03 15.36 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.16 3.25 5.33 -4.43 -0.02 3.23 16 23 C -0.17 -3.03 6.75 -24.34 -0.16 -3.19 16 24 C 0.07 1.15 6.38 38.31 0.24 1.40 16 25 O -0.37 -6.72 9.54 -31.93 -0.30 -7.03 16 26 C -0.17 -2.35 9.61 -38.53 -0.37 -2.72 16 27 C 0.51 6.71 7.42 -15.31 -0.11 6.59 16 28 O -0.55 -8.84 16.62 4.91 0.08 -8.76 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.67 7.37 -51.93 -0.38 0.29 16 31 H 0.09 0.21 8.00 -51.93 -0.42 -0.20 16 32 H 0.17 0.41 8.02 -52.49 -0.42 -0.01 16 33 H 0.15 1.06 6.50 -52.49 -0.34 0.71 16 34 H 0.40 5.12 6.43 -40.82 -0.26 4.85 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 2.50 6.02 -51.93 -0.31 2.19 16 39 H 0.26 6.41 8.31 -40.82 -0.34 6.08 16 40 H 0.03 0.66 7.96 -51.93 -0.41 0.25 16 41 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.22 6.66 -51.93 -0.35 0.88 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.16 2.34 7.69 -52.49 -0.40 1.94 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -31.58 370.86 -8.10 -39.68 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.49 Total: 5.25 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.40 Total: 11.96 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.63 Total: -51.96 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.13 Total: -25.88 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.58 -8.10 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073664775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.503 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds