Wall clock time and date at job start Tue Mar 31 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35703 * 119.44405 * 2 1 4 4 C 1.35257 * 121.00337 * 180.02562 * 3 2 1 5 5 C 1.41156 * 119.86829 * 359.97438 * 4 3 2 6 6 C 1.48457 * 120.53681 * 179.97438 * 5 4 3 7 7 O 1.21470 * 119.99875 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00138 * 0.02562 * 6 5 4 9 9 C 1.46503 * 120.00049 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.09002 * 108.45330 * 57.87787 * 10 9 8 12 12 C 1.47486 * 108.54728 * 175.84817 * 10 9 8 13 13 N 1.50125 * 106.48513 * 178.01130 * 12 10 9 14 14 C 1.36929 * 120.63754 * 111.36996 * 13 12 10 15 15 H 1.07999 * 120.00213 * 155.82262 * 14 13 12 16 16 C 1.38811 * 119.99950 * 335.82695 * 14 13 12 17 17 N 1.31617 * 120.00151 * 340.44346 * 16 14 13 18 18 Si 1.86801 * 120.00034 * 160.44245 * 16 14 13 19 19 H 1.48494 * 109.47175 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.47257 * 300.00362 * 18 16 14 21 21 H 1.48504 * 109.47190 * 59.99826 * 18 16 14 22 22 C 1.43425 * 118.72616 * 291.09709 * 13 12 10 23 23 C 1.55336 * 116.23732 * 89.62503 * 22 13 12 24 24 C 1.55181 * 108.87527 * 319.46297 * 23 22 13 25 25 O 1.39639 * 110.56783 * 322.14149 * 24 23 22 26 26 C 1.38285 * 118.92244 * 0.25202 * 5 4 3 27 27 C 1.34594 * 119.43945 * 180.02562 * 2 1 3 28 28 O 1.22013 * 119.96495 * 0.02562 * 27 2 1 29 29 H 1.08993 * 109.47354 * 89.99754 * 1 2 3 30 30 H 1.09004 * 109.47029 * 210.00253 * 1 2 3 31 31 H 1.09003 * 109.46903 * 329.99863 * 1 2 3 32 32 H 1.08000 * 119.49563 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.06518 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99838 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47027 * 59.99740 * 9 8 6 36 36 H 1.09002 * 109.46850 * 299.99673 * 9 8 6 37 37 H 1.08995 * 110.11648 * 58.80095 * 12 10 9 38 38 H 1.08997 * 110.15233 * 297.23722 * 12 10 9 39 39 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 40 40 H 1.08997 * 108.12625 * 211.38277 * 22 13 12 41 41 H 1.08999 * 108.12979 * 328.08579 * 22 13 12 42 42 H 1.08998 * 109.56591 * 79.28523 * 23 22 13 43 43 H 1.09002 * 109.56988 * 199.64262 * 23 22 13 44 44 H 1.09004 * 109.25672 * 82.42923 * 24 23 22 45 45 H 1.09006 * 109.25717 * 201.89719 * 24 23 22 46 46 H 1.08001 * 120.48960 * 179.74799 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.1818 0.0000 4 6 3.4841 1.2186 -0.0005 5 6 4.2201 0.0141 -0.0005 6 6 5.7045 0.0372 -0.0017 7 8 6.3281 -1.0052 -0.0021 8 7 6.3602 1.2147 -0.0022 9 6 7.8251 1.2375 -0.0027 10 6 8.3126 2.6877 -0.0039 11 1 7.9017 3.1905 0.8716 12 6 9.7840 2.6881 0.0968 13 7 10.2143 4.1253 0.0419 14 6 10.7498 4.7359 1.1444 15 1 11.3980 5.5916 1.0263 16 6 10.4596 4.2550 2.4138 17 7 9.4047 3.4909 2.6028 18 14 11.5661 4.6924 3.8538 19 1 11.0428 4.0585 5.0905 20 1 12.9415 4.1990 3.5890 21 1 11.5941 6.1671 4.0266 22 6 10.0593 4.8448 -1.1891 23 6 8.7052 5.5790 -1.3895 24 6 7.5598 4.6710 -0.8683 25 8 7.8176 3.3328 -1.1727 26 6 3.5360 -1.1877 -0.0053 27 6 2.1265 -1.1721 -0.0005 28 8 1.5055 -2.2224 -0.0015 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.5748 2.1069 0.0004 33 1 3.9996 2.1676 -0.0009 34 1 5.8622 2.0471 -0.0014 35 1 8.1960 0.7291 -0.8927 36 1 8.1966 0.7296 0.8873 37 1 10.2170 2.1374 -0.7382 38 1 10.0959 2.2416 1.0409 39 1 9.2021 3.1545 3.4898 40 1 10.8583 5.5834 -1.2531 41 1 10.1848 4.1407 -2.0116 42 1 8.7116 6.5153 -0.8315 43 1 8.5547 5.7846 -2.4493 44 1 7.4749 4.7840 0.2125 45 1 6.6220 4.9712 -1.3359 46 1 4.0738 -2.1243 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073664775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:05 Heat of formation + Delta-G solvation = -62.808920 kcal Electronic energy + Delta-G solvation = -29456.453495 eV Core-core repulsion = 25347.276162 eV Total energy + Delta-G solvation = -4109.177333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44597 -41.04886 -40.21719 -38.05151 -36.78414 -36.07660 -35.56772 -33.82025 -32.91603 -30.98986 -30.39797 -29.00100 -27.19152 -27.02701 -25.24252 -24.45659 -23.92278 -22.42511 -21.54234 -21.25458 -19.29224 -18.90106 -18.49977 -17.95178 -17.64693 -17.14640 -16.90710 -16.86526 -16.57106 -16.29129 -15.98293 -15.76128 -15.49058 -15.20759 -14.82514 -14.58133 -14.26406 -14.17879 -14.11863 -13.92287 -13.58406 -13.44149 -13.26125 -12.95291 -12.89291 -12.74177 -12.59168 -12.49143 -12.29271 -11.90182 -11.76500 -11.62187 -11.35202 -11.16947 -11.13983 -11.02380 -10.52772 -10.24481 -10.15025 -9.08738 -8.69416 -7.87677 -5.27041 -0.66657 0.62596 1.49501 1.54325 1.58317 1.61038 1.70479 1.98352 2.54103 2.62378 3.14275 3.29809 3.45146 3.55061 3.66093 3.71379 4.04501 4.14706 4.19167 4.31183 4.41198 4.43780 4.44238 4.48237 4.58912 4.70404 4.76670 4.78469 4.83204 4.84649 4.90679 4.98386 5.10638 5.11623 5.22218 5.23751 5.32934 5.38865 5.44059 5.45006 5.52590 5.70793 5.92295 6.38180 6.44653 6.55706 6.81139 7.06025 7.13565 7.85840 8.38445 9.18150 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002739 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.826255 B =10221.341265 C =10689.607442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.488 5.488 3 C 0.165 3.835 4 C -0.225 4.225 5 C -0.015 4.015 6 C 0.544 3.456 7 O -0.575 6.575 8 N -0.688 5.688 9 C 0.129 3.871 10 C 0.082 3.918 11 H 0.089 0.911 12 C 0.143 3.857 13 N -0.601 5.601 14 C -0.263 4.263 15 H 0.062 0.938 16 C -0.033 4.033 17 N -0.915 5.915 18 Si 0.955 3.045 19 H -0.294 1.294 20 H -0.289 1.289 21 H -0.281 1.281 22 C 0.153 3.847 23 C -0.165 4.165 24 C 0.067 3.933 25 O -0.366 6.366 26 C -0.213 4.213 27 C 0.505 3.495 28 O -0.594 6.594 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.232 0.768 33 H 0.176 0.824 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.257 3.223 -6.131 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.197 5.197 3 C 0.038 3.962 4 C -0.247 4.247 5 C -0.023 4.023 6 C 0.331 3.669 7 O -0.456 6.456 8 N -0.339 5.339 9 C 0.004 3.996 10 C 0.023 3.977 11 H 0.107 0.893 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.393 4.393 15 H 0.079 0.921 16 C -0.230 4.230 17 N -0.560 5.560 18 Si 0.785 3.215 19 H -0.221 1.221 20 H -0.215 1.215 21 H -0.207 1.207 22 C 0.025 3.975 23 C -0.206 4.206 24 C -0.011 4.011 25 O -0.285 6.285 26 C -0.237 4.237 27 C 0.308 3.692 28 O -0.481 6.481 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.194 0.806 34 H 0.253 0.747 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.288 1.714 -6.169 19.376 hybrid contribution 1.074 0.279 1.188 1.626 sum -17.214 1.993 -4.980 18.031 Atomic orbital electron populations 1.22540 0.74508 1.06477 1.05442 1.45555 1.11142 1.06356 1.56641 1.22762 0.93111 0.90207 0.90118 1.21016 0.93619 0.97875 1.12199 1.20457 0.92032 0.95209 0.94558 1.18779 0.87934 0.83633 0.76553 1.90749 1.69679 1.33754 1.51407 1.45664 1.07420 1.08384 1.72430 1.21493 0.79367 0.97294 1.01399 1.21848 0.96392 0.91213 0.88256 0.89303 1.20800 0.92730 0.85128 0.99552 1.44192 1.72449 1.06631 1.09013 1.19340 1.21630 1.13118 0.85219 0.92052 1.25399 0.97724 1.00982 0.98886 1.69963 1.25134 1.39132 1.21782 0.85535 0.78978 0.77621 0.79348 1.22063 1.21536 1.20674 1.20495 0.94927 0.94317 0.87746 1.23494 0.97585 0.98775 1.00779 1.22440 0.97264 0.82106 0.99273 1.87526 1.83876 1.22450 1.34630 1.22470 0.92854 0.99399 1.08975 1.16973 0.88568 0.83690 0.79998 1.90920 1.69987 1.31567 1.55650 0.88993 0.90662 0.84851 0.75176 0.80629 0.74704 0.92003 0.91664 0.95810 0.90360 0.93947 0.95311 0.94804 0.92756 0.90393 0.94197 0.88918 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.38 10.34 127.77 1.32 1.70 16 2 N -0.49 -7.29 2.98 -674.33 -2.01 -9.30 16 3 C 0.17 1.37 10.25 83.41 0.86 2.23 16 4 C -0.23 -3.18 9.51 22.30 0.21 -2.97 16 5 C -0.02 -0.38 5.91 -19.83 -0.12 -0.49 16 6 C 0.54 17.23 7.80 86.97 0.68 17.91 16 7 O -0.58 -23.23 16.39 -3.62 -0.06 -23.28 16 8 N -0.69 -20.02 5.39 -465.38 -2.51 -22.53 16 9 C 0.13 4.55 5.24 86.38 0.45 5.00 16 10 C 0.08 3.10 1.95 28.87 0.06 3.15 16 11 H 0.09 3.77 5.27 -2.39 -0.01 3.76 16 12 C 0.14 6.27 4.75 83.95 0.40 6.67 16 13 N -0.60 -27.76 2.60 -705.04 -1.84 -29.60 16 14 C -0.26 -13.35 9.62 84.03 0.81 -12.54 16 15 H 0.06 3.13 7.88 -2.91 -0.02 3.11 16 16 C -0.03 -1.68 4.91 84.86 0.42 -1.27 16 17 N -0.91 -46.49 9.59 21.65 0.21 -46.28 16 18 Si 0.96 42.11 29.60 68.60 2.03 44.14 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.15 6.03 5.33 87.75 0.47 6.50 16 23 C -0.17 -5.38 6.75 32.15 0.22 -5.16 16 24 C 0.07 2.10 6.38 72.73 0.46 2.56 16 25 O -0.37 -12.53 9.54 -137.18 -1.31 -13.83 16 26 C -0.21 -6.09 9.61 22.95 0.22 -5.87 16 27 C 0.50 13.32 7.42 84.94 0.63 13.95 16 28 O -0.59 -20.18 16.62 -5.36 -0.09 -20.27 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.95 7.37 -2.39 -0.02 0.93 16 31 H 0.13 -0.18 8.00 -2.39 -0.02 -0.20 16 32 H 0.23 -0.87 8.02 -2.91 -0.02 -0.89 16 33 H 0.18 1.59 6.50 -2.91 -0.02 1.57 16 34 H 0.41 9.63 6.43 -92.71 -0.60 9.03 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 3.86 6.02 -2.39 -0.01 3.85 16 39 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 40 H 0.03 1.13 7.96 -2.39 -0.02 1.11 16 41 H 0.03 1.30 7.97 -2.39 -0.02 1.28 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.04 1.47 6.66 -2.38 -0.02 1.45 16 45 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.14 4.44 7.69 -2.91 -0.02 4.42 16 Total: -1.00 -73.84 370.86 1.92 -71.92 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.41 Total: 17.67 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: 7.08 Total: 31.36 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -6.15 Total: -107.71 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -1.46 Total: -57.39 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -73.84 1.92 -71.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073664775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.112 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds