Wall clock time and date at job start Tue Mar 31 2020 19:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35691 * 116.99933 * 2 1 4 4 C 1.38891 * 119.62257 * 179.97438 * 3 2 1 5 5 C 1.39567 * 118.94695 * 180.02562 * 4 3 2 6 6 C 1.48164 * 120.89329 * 180.27675 * 5 4 3 7 7 O 1.21516 * 119.99936 * 359.72491 * 6 5 4 8 8 N 1.34776 * 120.00009 * 179.72330 * 6 5 4 9 9 C 1.46505 * 119.99851 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46874 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47519 * 305.00270 * 10 9 8 12 12 C 1.54804 * 109.46822 * 185.00821 * 10 9 8 13 13 N 1.45116 * 109.54032 * 172.11386 * 12 10 9 14 14 C 1.36943 * 118.75875 * 269.29188 * 13 12 10 15 15 H 1.08001 * 120.00109 * 26.09220 * 14 13 12 16 16 C 1.38815 * 119.99973 * 206.09462 * 14 13 12 17 17 N 1.31610 * 120.00148 * 15.46785 * 16 14 13 18 18 Si 1.86805 * 119.99649 * 195.46814 * 16 14 13 19 19 H 1.48493 * 109.47290 * 89.99916 * 18 16 14 20 20 H 1.48496 * 109.46762 * 209.99906 * 18 16 14 21 21 H 1.48504 * 109.47142 * 329.99668 * 18 16 14 22 22 C 1.47513 * 122.48773 * 89.29099 * 13 12 10 23 23 C 1.53577 * 111.02322 * 318.37586 * 22 13 12 24 24 C 1.51541 * 109.58108 * 320.01897 * 23 22 13 25 25 O 1.38015 * 109.47063 * 65.00388 * 10 9 8 26 26 C 1.39968 * 118.21847 * 0.02562 * 5 4 3 27 27 C 1.37980 * 119.13246 * 359.97438 * 26 5 4 28 28 N 1.31913 * 120.97647 * 359.97438 * 27 26 5 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47120 * 299.99666 * 1 2 3 31 31 H 1.09003 * 109.47087 * 59.99320 * 1 2 3 32 32 H 1.08002 * 120.52827 * 0.03070 * 4 3 2 33 33 H 0.96998 * 120.00180 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46927 * 300.00329 * 9 8 6 35 35 H 1.09003 * 109.47001 * 60.00328 * 9 8 6 36 36 H 1.09002 * 109.46274 * 292.13874 * 12 10 9 37 37 H 1.09004 * 109.45880 * 52.09077 * 12 10 9 38 38 H 0.97003 * 120.00327 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.16494 * 197.97799 * 22 13 12 40 40 H 1.09001 * 109.12277 * 78.74632 * 22 13 12 41 41 H 1.09005 * 109.44830 * 199.98676 * 23 22 13 42 42 H 1.08995 * 109.45017 * 80.05347 * 23 22 13 43 43 H 1.08996 * 109.58921 * 331.61978 * 24 23 22 44 44 H 1.08997 * 109.58570 * 211.18720 * 24 23 22 45 45 H 1.08001 * 120.43520 * 179.97438 * 26 5 4 46 46 H 1.07995 * 119.51074 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2726 0.0005 5 6 4.0513 2.5235 0.0011 6 6 5.5283 2.6416 -0.0045 7 8 6.2177 1.6410 -0.0045 8 7 6.1070 3.8588 -0.0095 9 6 7.5674 3.9754 -0.0156 10 6 7.9608 5.4540 -0.0211 11 1 7.4813 5.9544 -0.8623 12 6 9.4980 5.5783 -0.1549 13 7 9.8573 6.9710 -0.3475 14 6 9.9427 7.4590 -1.6242 15 1 9.3702 7.0005 -2.4169 16 6 10.7652 8.5428 -1.8994 17 7 11.6825 8.9104 -1.0301 18 14 10.5700 9.4797 -3.5037 19 1 9.5950 10.5840 -3.3166 20 1 11.8825 10.0420 -3.9114 21 1 10.0773 8.5577 -4.5586 22 6 10.1341 7.8811 0.7800 23 6 9.1304 7.6646 1.9220 24 6 7.7470 7.4386 1.3463 25 8 7.5523 6.0431 1.1583 26 6 3.2394 3.6636 0.0016 27 6 1.8680 3.5116 0.0010 28 7 1.3178 2.3127 -0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 4.0231 0.3684 0.0005 33 1 5.5566 4.6575 -0.0098 34 1 7.9740 3.4941 0.8739 35 1 7.9669 3.4902 -0.9061 36 1 9.9730 5.2027 0.7514 37 1 9.8364 4.9942 -1.0107 38 1 12.2574 9.6675 -1.2226 39 1 10.0645 8.9121 0.4330 40 1 11.1425 7.6953 1.1497 41 1 9.1167 8.5447 2.5650 42 1 9.4274 6.7934 2.5059 43 1 7.6614 7.9517 0.3885 44 1 6.9965 7.8225 2.0372 45 1 3.6805 4.6494 0.0024 46 1 1.2357 4.3871 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073671971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:07 Heat of formation + Delta-G solvation = -49.245911 kcal Electronic energy + Delta-G solvation = -28719.579501 eV Core-core repulsion = 24610.990304 eV Total energy + Delta-G solvation = -4108.589197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11373 -39.73796 -38.86382 -37.95354 -35.35923 -34.77228 -33.07852 -32.12411 -31.54288 -31.02895 -28.67875 -27.66505 -25.95848 -25.45725 -24.26384 -23.65272 -22.62545 -21.00808 -20.68608 -19.62513 -18.87790 -17.59006 -17.09907 -16.77593 -16.37422 -16.19751 -16.06730 -15.84137 -15.23925 -15.02125 -14.98161 -14.49321 -14.42821 -14.14129 -13.77318 -13.68470 -13.52555 -13.05399 -12.77561 -12.52993 -12.32836 -12.15473 -12.04676 -11.57270 -11.46104 -11.25045 -11.03511 -10.93120 -10.70557 -10.45317 -10.27059 -10.23380 -9.94165 -9.89302 -9.81585 -9.74650 -9.08116 -8.89660 -8.88374 -8.48615 -6.81434 -5.88885 -3.34158 0.41313 0.79552 2.59642 2.72667 3.11678 3.30061 3.37767 3.38678 3.54464 3.93624 4.08451 4.34234 4.40202 4.61887 4.70889 4.75285 4.93372 4.97330 5.12615 5.26277 5.30046 5.34856 5.44582 5.48709 5.54779 5.64350 5.72316 5.80843 5.90972 5.93128 5.95809 6.10837 6.18713 6.29361 6.40478 6.50070 6.65426 6.69418 6.76858 6.84660 7.30366 7.39393 7.43659 7.58589 7.71901 8.05306 8.14335 8.34055 9.11911 9.76511 10.22456 11.18566 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.002262 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.494686 B =12377.840975 C =12663.298332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.048 4.048 6 C 0.554 3.446 7 O -0.531 6.531 8 N -0.707 5.707 9 C 0.131 3.869 10 C 0.066 3.934 11 H 0.053 0.947 12 C 0.128 3.872 13 N -0.591 5.591 14 C -0.267 4.267 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.177 3.823 23 C -0.177 4.177 24 C 0.088 3.912 25 O -0.396 6.396 26 C -0.180 4.180 27 C 0.138 3.862 28 N -0.529 5.529 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.155 0.845 33 H 0.404 0.596 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.255 0.745 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.144 0.856 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.801 -9.745 4.128 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.138 3.862 4 C -0.155 4.155 5 C -0.059 4.059 6 C 0.340 3.660 7 O -0.408 6.408 8 N -0.358 5.358 9 C 0.008 3.992 10 C 0.004 3.996 11 H 0.071 0.929 12 C -0.002 4.002 13 N -0.312 5.312 14 C -0.396 4.396 15 H 0.085 0.915 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.052 3.948 23 C -0.216 4.216 24 C 0.012 3.988 25 O -0.316 6.316 26 C -0.201 4.201 27 C -0.017 4.017 28 N -0.253 5.253 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.162 0.838 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.964 -10.755 4.256 23.073 hybrid contribution 0.520 1.466 -1.008 1.853 sum -19.444 -9.289 3.248 21.792 Atomic orbital electron populations 1.22886 0.76992 1.03102 1.02521 1.86266 1.23062 1.24166 1.87754 1.19681 0.89002 0.84854 0.92707 1.21136 0.91877 0.99208 1.03233 1.20194 0.94019 0.93291 0.98359 1.18054 0.86650 0.83918 0.77419 1.90793 1.64112 1.36420 1.49451 1.45891 1.08737 1.07631 1.73557 1.21532 0.78400 0.96239 1.03050 1.22644 0.99378 0.90287 0.87319 0.92937 1.21401 0.91226 0.87772 0.99752 1.43838 1.80111 1.04062 1.03212 1.19225 1.20769 1.13390 0.86237 0.91538 1.25055 0.95571 1.00830 0.97757 1.70064 1.19940 1.28381 1.36132 0.86290 0.77066 0.80113 0.83286 1.21400 1.21674 1.20383 1.21005 0.93541 0.95397 0.84876 1.22774 0.97559 1.00909 1.00362 1.22018 0.95869 0.80630 1.00262 1.86071 1.82719 1.23967 1.38802 1.22222 0.94968 0.99186 1.03683 1.22377 0.92556 0.93626 0.93166 1.67192 1.41271 0.98952 1.17910 0.88489 0.92200 0.92199 0.82742 0.76061 0.90535 0.89798 0.93735 0.92545 0.93518 0.90612 0.95439 0.92083 0.92358 0.92014 0.91203 0.83806 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.18 10.47 -18.78 -0.20 -3.38 16 3 C 0.32 3.54 7.49 -17.16 -0.13 3.41 16 4 C -0.13 -1.55 9.61 -38.84 -0.37 -1.93 16 5 C -0.05 -0.55 5.91 -104.68 -0.62 -1.17 16 6 C 0.55 7.59 7.80 -12.18 -0.10 7.49 16 7 O -0.53 -9.01 16.44 5.35 0.09 -8.92 16 8 N -0.71 -8.95 5.45 -61.14 -0.33 -9.28 16 9 C 0.13 1.89 5.34 -4.04 -0.02 1.87 16 10 C 0.07 1.08 2.68 -25.78 -0.07 1.01 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.13 2.52 5.12 -3.83 -0.02 2.50 16 13 N -0.59 -13.82 2.23 -172.02 -0.38 -14.20 16 14 C -0.27 -6.87 9.46 -15.06 -0.14 -7.02 16 15 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 16 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 17 N -0.90 -25.14 10.99 55.49 0.61 -24.53 16 18 Si 0.90 20.88 29.58 -169.99 -5.03 15.85 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 C 0.18 4.01 4.70 -3.19 -0.01 4.00 16 23 C -0.18 -3.18 5.79 -27.17 -0.16 -3.34 16 24 C 0.09 1.46 6.37 36.42 0.23 1.70 16 25 O -0.40 -6.56 9.38 -26.54 -0.25 -6.81 16 26 C -0.18 -1.59 9.61 -39.03 -0.38 -1.96 16 27 C 0.14 1.15 11.17 -17.61 -0.20 0.96 16 28 N -0.53 -5.45 9.18 -13.38 -0.12 -5.58 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.15 1.82 7.74 -52.49 -0.41 1.41 16 33 H 0.40 4.31 6.60 -40.82 -0.27 4.04 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 37 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 38 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.08 1.91 6.37 -51.93 -0.33 1.58 16 40 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 43 H 0.06 1.15 7.40 -51.93 -0.38 0.76 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.14 0.95 6.53 -52.49 -0.34 0.61 16 46 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -31.29 377.44 -7.69 -38.98 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.75 Total: 3.23 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.02 Total: 8.95 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.23 Total: -53.59 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.36 Total: -19.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.29 -7.69 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073671971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.266 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds