Wall clock time and date at job start Tue Mar 31 2020 19:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35691 * 116.99933 * 2 1 4 4 C 1.38891 * 119.62257 * 179.97438 * 3 2 1 5 5 C 1.39567 * 118.94695 * 180.02562 * 4 3 2 6 6 C 1.48164 * 120.89329 * 180.27675 * 5 4 3 7 7 O 1.21516 * 119.99936 * 359.72491 * 6 5 4 8 8 N 1.34776 * 120.00009 * 179.72330 * 6 5 4 9 9 C 1.46505 * 119.99851 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46874 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47519 * 305.00270 * 10 9 8 12 12 C 1.54804 * 109.46822 * 185.00821 * 10 9 8 13 13 N 1.45116 * 109.54032 * 172.11386 * 12 10 9 14 14 C 1.36943 * 118.75875 * 269.29188 * 13 12 10 15 15 H 1.08001 * 120.00109 * 26.09220 * 14 13 12 16 16 C 1.38815 * 119.99973 * 206.09462 * 14 13 12 17 17 N 1.31610 * 120.00148 * 15.46785 * 16 14 13 18 18 Si 1.86805 * 119.99649 * 195.46814 * 16 14 13 19 19 H 1.48493 * 109.47290 * 89.99916 * 18 16 14 20 20 H 1.48496 * 109.46762 * 209.99906 * 18 16 14 21 21 H 1.48504 * 109.47142 * 329.99668 * 18 16 14 22 22 C 1.47513 * 122.48773 * 89.29099 * 13 12 10 23 23 C 1.53577 * 111.02322 * 318.37586 * 22 13 12 24 24 C 1.51541 * 109.58108 * 320.01897 * 23 22 13 25 25 O 1.38015 * 109.47063 * 65.00388 * 10 9 8 26 26 C 1.39968 * 118.21847 * 0.02562 * 5 4 3 27 27 C 1.37980 * 119.13246 * 359.97438 * 26 5 4 28 28 N 1.31913 * 120.97647 * 359.97438 * 27 26 5 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47120 * 299.99666 * 1 2 3 31 31 H 1.09003 * 109.47087 * 59.99320 * 1 2 3 32 32 H 1.08002 * 120.52827 * 0.03070 * 4 3 2 33 33 H 0.96998 * 120.00180 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.46927 * 300.00329 * 9 8 6 35 35 H 1.09003 * 109.47001 * 60.00328 * 9 8 6 36 36 H 1.09002 * 109.46274 * 292.13874 * 12 10 9 37 37 H 1.09004 * 109.45880 * 52.09077 * 12 10 9 38 38 H 0.97003 * 120.00327 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.16494 * 197.97799 * 22 13 12 40 40 H 1.09001 * 109.12277 * 78.74632 * 22 13 12 41 41 H 1.09005 * 109.44830 * 199.98676 * 23 22 13 42 42 H 1.08995 * 109.45017 * 80.05347 * 23 22 13 43 43 H 1.08996 * 109.58921 * 331.61978 * 24 23 22 44 44 H 1.08997 * 109.58570 * 211.18720 * 24 23 22 45 45 H 1.08001 * 120.43520 * 179.97438 * 26 5 4 46 46 H 1.07995 * 119.51074 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4324 1.2726 0.0005 5 6 4.0513 2.5235 0.0011 6 6 5.5283 2.6416 -0.0045 7 8 6.2177 1.6410 -0.0045 8 7 6.1070 3.8588 -0.0095 9 6 7.5674 3.9754 -0.0156 10 6 7.9608 5.4540 -0.0211 11 1 7.4813 5.9544 -0.8623 12 6 9.4980 5.5783 -0.1549 13 7 9.8573 6.9710 -0.3475 14 6 9.9427 7.4590 -1.6242 15 1 9.3702 7.0005 -2.4169 16 6 10.7652 8.5428 -1.8994 17 7 11.6825 8.9104 -1.0301 18 14 10.5700 9.4797 -3.5037 19 1 9.5950 10.5840 -3.3166 20 1 11.8825 10.0420 -3.9114 21 1 10.0773 8.5577 -4.5586 22 6 10.1341 7.8811 0.7800 23 6 9.1304 7.6646 1.9220 24 6 7.7470 7.4386 1.3463 25 8 7.5523 6.0431 1.1583 26 6 3.2394 3.6636 0.0016 27 6 1.8680 3.5116 0.0010 28 7 1.3178 2.3127 -0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 4.0231 0.3684 0.0005 33 1 5.5566 4.6575 -0.0098 34 1 7.9740 3.4941 0.8739 35 1 7.9669 3.4902 -0.9061 36 1 9.9730 5.2027 0.7514 37 1 9.8364 4.9942 -1.0107 38 1 12.2574 9.6675 -1.2226 39 1 10.0645 8.9121 0.4330 40 1 11.1425 7.6953 1.1497 41 1 9.1167 8.5447 2.5650 42 1 9.4274 6.7934 2.5059 43 1 7.6614 7.9517 0.3885 44 1 6.9965 7.8225 2.0372 45 1 3.6805 4.6494 0.0024 46 1 1.2357 4.3871 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073671971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:06 Heat of formation + Delta-G solvation = -71.708653 kcal Electronic energy + Delta-G solvation = -28720.553558 eV Core-core repulsion = 24610.990304 eV Total energy + Delta-G solvation = -4109.563255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92989 -40.86323 -40.17171 -38.73526 -37.00983 -36.06465 -34.06904 -33.51253 -33.28923 -31.81308 -30.13807 -28.29388 -27.44734 -27.08390 -25.49181 -24.40314 -23.99839 -22.32512 -21.78846 -21.29128 -19.80828 -18.85821 -18.38731 -17.78825 -17.57566 -17.10062 -17.06991 -16.97630 -16.64335 -16.43965 -16.14812 -15.82603 -15.50882 -15.16581 -15.02477 -14.77595 -14.63683 -14.46294 -14.24849 -13.75029 -13.65055 -13.19235 -13.11697 -12.99790 -12.77951 -12.68018 -12.48875 -12.39832 -12.20758 -12.06045 -11.75938 -11.51295 -11.45163 -11.29897 -11.09264 -10.76364 -10.52953 -10.27273 -10.19386 -9.62039 -8.72312 -7.88804 -5.36177 -0.43263 0.06462 1.46535 1.48055 1.56298 1.74549 1.76707 2.21668 2.49919 2.73218 2.77147 3.25155 3.27475 3.46441 3.57453 3.87409 3.94211 3.99796 4.12982 4.14590 4.23749 4.37120 4.43705 4.45306 4.53588 4.58373 4.62842 4.67141 4.72749 4.76103 4.77822 4.85191 4.92483 4.97305 5.15478 5.20183 5.22201 5.26326 5.32219 5.48273 5.62459 5.76609 6.14763 6.35778 6.39524 6.69882 6.75437 7.02571 7.14846 7.87117 8.28163 9.16817 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.002262 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.494686 B =12377.840975 C =12663.298332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.307 3.693 4 C -0.151 4.151 5 C -0.059 4.059 6 C 0.557 3.443 7 O -0.571 6.571 8 N -0.696 5.696 9 C 0.140 3.860 10 C 0.086 3.914 11 H 0.050 0.950 12 C 0.122 3.878 13 N -0.605 5.605 14 C -0.267 4.267 15 H 0.070 0.930 16 C -0.047 4.047 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.269 1.269 22 C 0.185 3.815 23 C -0.165 4.165 24 C 0.092 3.908 25 O -0.391 6.391 26 C -0.168 4.168 27 C 0.144 3.856 28 N -0.534 5.534 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.416 0.584 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.249 0.751 39 H 0.046 0.954 40 H -0.009 1.009 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.110 0.890 45 H 0.171 0.829 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.745 -9.143 4.267 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.129 3.871 4 C -0.173 4.173 5 C -0.070 4.070 6 C 0.343 3.657 7 O -0.450 6.450 8 N -0.348 5.348 9 C 0.016 3.984 10 C 0.025 3.975 11 H 0.068 0.932 12 C -0.006 4.006 13 N -0.327 5.327 14 C -0.397 4.397 15 H 0.087 0.913 16 C -0.243 4.243 17 N -0.581 5.581 18 Si 0.793 3.207 19 H -0.209 1.209 20 H -0.226 1.226 21 H -0.194 1.194 22 C 0.060 3.940 23 C -0.204 4.204 24 C 0.016 3.984 25 O -0.310 6.310 26 C -0.189 4.189 27 C -0.012 4.012 28 N -0.259 5.259 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.009 0.991 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.128 0.872 45 H 0.189 0.811 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.960 -10.171 4.399 25.494 hybrid contribution 1.410 1.246 -1.023 2.142 sum -21.550 -8.926 3.376 23.568 Atomic orbital electron populations 1.23113 0.75317 1.04810 1.02599 1.86245 1.24797 1.24164 1.87694 1.19727 0.88870 0.85447 0.93097 1.21103 0.92388 0.99125 1.04653 1.20040 0.92691 0.94269 0.99996 1.18359 0.87560 0.83379 0.76370 1.90774 1.65228 1.37711 1.51337 1.45700 1.07976 1.08017 1.73072 1.21297 0.79627 0.94514 1.02923 1.22284 0.96397 0.91438 0.87421 0.93182 1.21570 0.93688 0.85867 0.99482 1.44036 1.80435 1.05524 1.02715 1.19522 1.19821 1.13055 0.87320 0.91263 1.25776 0.95683 1.02054 1.00751 1.70228 1.21077 1.28841 1.37920 0.85312 0.76420 0.78908 0.80069 1.20938 1.22587 1.19404 1.20777 0.93371 0.93751 0.86081 1.22633 0.97131 1.02067 0.98589 1.22079 0.95839 0.80373 1.00097 1.86103 1.82246 1.24092 1.38582 1.22511 0.95030 0.99315 1.02016 1.23066 0.92881 0.94054 0.91182 1.67290 1.41357 0.99358 1.17865 0.86091 0.92042 0.92087 0.84027 0.74589 0.91054 0.89781 0.93904 0.92999 0.94167 0.93528 0.99053 0.89779 0.92176 0.93958 0.87199 0.81118 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.63 16 2 O -0.32 -6.54 10.47 -90.10 -0.94 -7.48 16 3 C 0.31 6.61 7.49 84.80 0.63 7.24 16 4 C -0.15 -3.51 9.61 22.75 0.22 -3.29 16 5 C -0.06 -1.28 5.91 -19.90 -0.12 -1.39 16 6 C 0.56 14.69 7.80 86.88 0.68 15.37 16 7 O -0.57 -19.50 16.44 -3.77 -0.06 -19.56 16 8 N -0.70 -16.21 5.45 -465.65 -2.54 -18.74 16 9 C 0.14 3.85 5.34 86.38 0.46 4.32 16 10 C 0.09 2.70 2.68 31.21 0.08 2.78 16 11 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 12 C 0.12 4.77 5.12 87.25 0.45 5.22 16 13 N -0.61 -28.49 2.23 -698.14 -1.55 -30.05 16 14 C -0.27 -13.83 9.46 84.03 0.80 -13.03 16 15 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 16 C -0.05 -2.52 4.89 84.86 0.41 -2.11 16 17 N -0.93 -53.66 10.99 21.65 0.24 -53.42 16 18 Si 0.96 43.23 29.58 68.60 2.03 45.26 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.19 8.55 4.70 86.38 0.41 8.96 16 23 C -0.17 -5.70 5.79 30.31 0.18 -5.52 16 24 C 0.09 2.79 6.37 71.50 0.46 3.25 16 25 O -0.39 -11.88 9.38 -117.87 -1.11 -12.99 16 26 C -0.17 -2.43 9.61 22.63 0.22 -2.21 16 27 C 0.14 1.89 11.17 84.62 0.94 2.84 16 28 N -0.53 -9.83 9.18 -309.13 -2.84 -12.67 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.14 3.54 7.74 -2.91 -0.02 3.51 16 33 H 0.42 7.54 6.60 -92.71 -0.61 6.92 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.67 8.11 -2.39 -0.02 1.66 16 37 H 0.05 2.05 7.98 -2.38 -0.02 2.03 16 38 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.05 2.40 6.37 -2.39 -0.02 2.39 16 40 H -0.01 -0.45 8.04 -2.39 -0.02 -0.47 16 41 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 42 H 0.06 2.07 8.01 -2.39 -0.02 2.05 16 43 H 0.04 1.48 7.40 -2.39 -0.02 1.46 16 44 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.17 1.47 6.53 -2.91 -0.02 1.45 16 46 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -69.72 377.44 0.60 -69.12 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.39 Total: 16.50 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.99 Total: 24.04 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -6.69 Total: -114.88 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.11 Total: -40.04 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.72 0.60 -69.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073671971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.590 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds