Wall clock time and date at job start Tue Mar 31 2020 19:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35419 * 116.99960 * 2 1 4 4 N 1.32234 * 119.80260 * 0.02562 * 3 2 1 5 5 C 1.31881 * 121.79951 * 180.02562 * 4 3 2 6 6 C 1.38354 * 121.18984 * 359.97438 * 5 4 3 7 7 C 1.38335 * 119.45534 * 359.97438 * 6 5 4 8 8 C 1.39983 * 118.35037 * 0.27978 * 7 6 5 9 9 C 1.47528 * 120.59815 * 179.70205 * 8 7 6 10 10 O 1.21589 * 120.00226 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99988 * 359.97438 * 9 8 7 12 12 C 1.46491 * 119.99935 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47125 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46919 * 305.00367 * 13 12 11 15 15 C 1.54802 * 109.47146 * 185.00869 * 13 12 11 16 16 N 1.45123 * 109.54126 * 172.11104 * 15 13 12 17 17 C 1.36936 * 118.75814 * 269.28901 * 16 15 13 18 18 H 1.08002 * 119.99679 * 26.09060 * 17 16 15 19 19 C 1.38810 * 120.00051 * 206.08693 * 17 16 15 20 20 N 1.31618 * 119.99715 * 15.47667 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 195.48028 * 19 17 16 22 22 H 1.48494 * 109.47506 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47062 * 120.00157 * 21 19 17 24 24 H 1.48502 * 109.46839 * 239.99950 * 21 19 17 25 25 C 1.47514 * 122.48401 * 89.28465 * 16 15 13 26 26 C 1.53571 * 111.02664 * 318.38065 * 25 16 15 27 27 C 1.51533 * 109.58289 * 320.01718 * 26 25 16 28 28 O 1.38018 * 109.46709 * 65.00009 * 13 12 11 29 29 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46921 * 299.99622 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00045 * 1 2 3 32 32 H 1.08004 * 119.40080 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.27115 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.82379 * 180.02562 * 7 6 5 35 35 H 0.97005 * 119.99807 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47373 * 299.99269 * 12 11 9 37 37 H 1.08998 * 109.47517 * 60.00090 * 12 11 9 38 38 H 1.09004 * 109.45876 * 292.13172 * 15 13 12 39 39 H 1.09004 * 109.46071 * 52.08787 * 15 13 12 40 40 H 0.97006 * 119.99300 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.16770 * 197.97783 * 25 16 15 42 42 H 1.09003 * 109.12156 * 78.74830 * 25 16 15 43 43 H 1.09003 * 109.45098 * 199.98782 * 26 25 16 44 44 H 1.08995 * 109.45753 * 80.05549 * 26 25 16 45 45 H 1.09003 * 109.58836 * 331.61862 * 27 26 25 46 46 H 1.08995 * 109.59112 * 211.19185 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2527 3.6574 -0.0005 7 6 4.0588 2.5332 0.0000 8 6 3.4450 1.2752 -0.0050 9 6 4.2570 0.0435 -0.0113 10 8 3.7125 -1.0437 -0.0151 11 7 5.6024 0.1233 -0.0128 12 6 6.4087 -1.0997 -0.0197 13 6 7.8938 -0.7316 -0.0207 14 1 8.1030 -0.0682 -0.8600 15 6 8.7442 -2.0180 -0.1553 16 7 10.1382 -1.6609 -0.3438 17 6 10.6098 -1.4977 -1.6190 18 1 9.9340 -1.2155 -2.4127 19 6 11.9566 -1.6949 -1.8914 20 7 12.7188 -2.3232 -1.0215 21 14 12.6871 -1.0684 -3.4924 22 1 11.6283 -0.4021 -4.2924 23 1 13.7695 -0.0960 -3.1955 24 1 13.2443 -2.2095 -4.2622 25 6 11.0661 -1.4670 0.7864 26 6 10.3896 -0.6947 1.9285 27 6 9.5260 0.4096 1.3531 28 8 8.2100 -0.0923 1.1609 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2485 4.3865 0.0001 33 1 3.6934 4.6434 -0.0005 34 1 5.1349 2.6239 0.0000 35 1 6.0368 0.9906 -0.0102 36 1 6.1811 -1.6900 0.8680 37 1 6.1785 -1.6818 -0.9120 38 1 8.6420 -2.6172 0.7495 39 1 8.3978 -2.5943 -1.0133 40 1 13.6600 -2.4607 -1.2118 41 1 11.9367 -0.9082 0.4429 42 1 11.3886 -2.4409 1.1548 43 1 11.1525 -0.2597 2.5743 44 1 9.7682 -1.3761 2.5094 45 1 9.9367 0.7341 0.3970 46 1 9.4988 1.2507 2.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073753474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:23 Heat of formation + Delta-G solvation = -47.360017 kcal Electronic energy + Delta-G solvation = -29169.349638 eV Core-core repulsion = 25060.842219 eV Total energy + Delta-G solvation = -4108.507419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10048 -39.40180 -38.58658 -38.09352 -35.26674 -34.61449 -33.13383 -31.96431 -31.49513 -31.08729 -28.60519 -27.44351 -25.82922 -25.41107 -24.46848 -23.23370 -22.57863 -20.89932 -20.56101 -19.56559 -18.76497 -17.72377 -17.33590 -16.97681 -16.31531 -16.10297 -15.76011 -15.45276 -15.11896 -14.97447 -14.71999 -14.49340 -14.29188 -13.86809 -13.71885 -13.61452 -13.14940 -12.99769 -12.84728 -12.68597 -12.22838 -12.10801 -11.96390 -11.45373 -11.41445 -11.22670 -11.00002 -10.89727 -10.64856 -10.29845 -10.26672 -10.24666 -9.90482 -9.78135 -9.74416 -9.66381 -8.97950 -8.84459 -8.72883 -8.46215 -6.78319 -5.86730 -3.31578 0.42530 0.93940 2.83676 2.85368 3.18767 3.30959 3.39505 3.40951 3.63279 3.96411 4.14638 4.41596 4.43265 4.54169 4.70188 4.88154 5.07952 5.10977 5.12941 5.20423 5.33792 5.41193 5.50396 5.54123 5.61484 5.68963 5.72180 5.86081 5.98455 5.99834 6.02638 6.15568 6.24923 6.33454 6.50596 6.59791 6.68357 6.72775 6.81041 6.98526 7.32953 7.42269 7.60447 7.62739 7.74405 8.18616 8.31832 8.36605 9.14410 9.79200 10.25271 11.20825 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002492 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.267038 B =11234.095333 C =11297.555525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.270 6.270 3 C 0.370 3.630 4 N -0.547 5.547 5 C 0.163 3.837 6 C -0.221 4.221 7 C -0.007 4.007 8 C -0.205 4.205 9 C 0.560 3.440 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.134 3.866 13 C 0.067 3.933 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.592 5.592 17 C -0.265 4.265 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.177 3.823 26 C -0.177 4.177 27 C 0.088 3.912 28 O -0.396 6.396 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 12.491 4.127 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.173 6.173 3 C 0.190 3.810 4 N -0.272 5.272 5 C 0.006 3.994 6 C -0.241 4.241 7 C -0.033 4.033 8 C -0.212 4.212 9 C 0.345 3.655 10 O -0.397 6.397 11 N -0.369 5.369 12 C 0.011 3.989 13 C 0.005 3.995 14 H 0.070 0.930 15 C -0.002 4.002 16 N -0.313 5.313 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.052 3.948 26 C -0.216 4.216 27 C 0.012 3.988 28 O -0.315 6.315 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.717 11.231 4.255 23.086 hybrid contribution 1.701 0.967 -1.003 2.199 sum -18.015 12.198 3.252 21.998 Atomic orbital electron populations 1.22955 0.77596 1.03331 1.02184 1.86550 1.22258 1.22963 1.85558 1.19877 0.88165 0.85122 0.87817 1.67475 1.40384 0.98698 1.20616 1.22649 0.93099 0.93727 0.89940 1.21939 0.94728 0.99977 1.07442 1.21713 1.00885 0.90546 0.90195 1.20111 0.91651 0.95222 1.14178 1.17749 0.82102 0.88216 0.77414 1.90828 1.71678 1.28310 1.48933 1.45857 1.05416 1.10543 1.75059 1.21441 0.88398 0.86294 1.02806 1.22635 0.92161 0.97585 0.87165 0.93046 1.21408 0.85949 0.93065 0.99734 1.43850 1.04354 1.79898 1.03205 1.19261 0.92871 1.40976 0.86327 0.91525 1.25050 0.97865 0.98615 0.97730 1.70084 1.06115 1.42314 1.36075 0.86241 0.79067 0.78336 0.83226 1.20236 1.21530 1.21629 1.21001 0.91807 0.97168 0.84841 1.22767 0.99433 0.99027 1.00344 1.22013 0.81841 0.94768 1.00193 1.86079 1.31381 1.75329 1.38726 0.88338 0.92301 0.92301 0.81907 0.83804 0.83608 0.76602 0.90803 0.90066 0.93769 0.92568 0.93605 0.90627 0.95460 0.92119 0.92364 0.92052 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.38 101.05 1.05 1.38 16 2 O -0.27 -3.78 8.58 -39.72 -0.34 -4.12 16 3 C 0.37 4.86 7.51 -16.61 -0.12 4.73 16 4 N -0.55 -6.01 9.21 -12.98 -0.12 -6.13 16 5 C 0.16 1.28 11.17 -17.49 -0.20 1.08 16 6 C -0.22 -1.58 10.09 -39.50 -0.40 -1.98 16 7 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 8 C -0.21 -2.60 5.90 -104.69 -0.62 -3.22 16 9 C 0.56 8.50 7.77 -12.47 -0.10 8.40 16 10 O -0.52 -9.74 15.19 -16.48 -0.25 -9.99 16 11 N -0.72 -9.85 5.45 -61.36 -0.33 -10.19 16 12 C 0.13 2.07 5.34 -4.04 -0.02 2.05 16 13 C 0.07 1.14 2.68 -25.78 -0.07 1.07 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.13 2.59 5.12 -3.83 -0.02 2.57 16 16 N -0.59 -14.10 2.23 -172.01 -0.38 -14.49 16 17 C -0.26 -6.93 9.46 -15.06 -0.14 -7.07 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.01 0.17 4.89 -17.43 -0.09 0.08 16 20 N -0.90 -25.41 11.00 55.49 0.61 -24.80 16 21 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.18 4.08 4.70 -3.19 -0.02 4.06 16 26 C -0.18 -3.24 5.78 -27.18 -0.16 -3.40 16 27 C 0.09 1.50 6.37 36.42 0.23 1.73 16 28 O -0.40 -6.79 9.38 -26.55 -0.25 -7.04 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.15 1.01 6.51 -52.49 -0.34 0.66 16 35 H 0.40 4.61 6.56 -40.82 -0.27 4.34 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 39 H 0.06 1.14 7.98 -51.93 -0.41 0.73 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.08 1.93 6.37 -51.93 -0.33 1.60 16 42 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 45 H 0.06 1.16 7.40 -51.93 -0.38 0.78 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -32.91 375.08 -8.25 -41.15 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.77 Total: 2.88 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.04 Total: 11.04 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.23 Total: -55.60 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.84 Total: -21.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.91 -8.25 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073753474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.209 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds