Wall clock time and date at job start Tue Mar 31 2020 19:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35419 * 116.99960 * 2 1 4 4 N 1.32234 * 119.80260 * 0.02562 * 3 2 1 5 5 C 1.31881 * 121.79951 * 180.02562 * 4 3 2 6 6 C 1.38354 * 121.18984 * 359.97438 * 5 4 3 7 7 C 1.38335 * 119.45534 * 359.97438 * 6 5 4 8 8 C 1.39983 * 118.35037 * 0.27978 * 7 6 5 9 9 C 1.47528 * 120.59815 * 179.70205 * 8 7 6 10 10 O 1.21589 * 120.00226 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99988 * 359.97438 * 9 8 7 12 12 C 1.46491 * 119.99935 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47125 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46919 * 305.00367 * 13 12 11 15 15 C 1.54802 * 109.47146 * 185.00869 * 13 12 11 16 16 N 1.45123 * 109.54126 * 172.11104 * 15 13 12 17 17 C 1.36936 * 118.75814 * 269.28901 * 16 15 13 18 18 H 1.08002 * 119.99679 * 26.09060 * 17 16 15 19 19 C 1.38810 * 120.00051 * 206.08693 * 17 16 15 20 20 N 1.31618 * 119.99715 * 15.47667 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 195.48028 * 19 17 16 22 22 H 1.48494 * 109.47506 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47062 * 120.00157 * 21 19 17 24 24 H 1.48502 * 109.46839 * 239.99950 * 21 19 17 25 25 C 1.47514 * 122.48401 * 89.28465 * 16 15 13 26 26 C 1.53571 * 111.02664 * 318.38065 * 25 16 15 27 27 C 1.51533 * 109.58289 * 320.01718 * 26 25 16 28 28 O 1.38018 * 109.46709 * 65.00009 * 13 12 11 29 29 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46921 * 299.99622 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00045 * 1 2 3 32 32 H 1.08004 * 119.40080 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.27115 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.82379 * 180.02562 * 7 6 5 35 35 H 0.97005 * 119.99807 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47373 * 299.99269 * 12 11 9 37 37 H 1.08998 * 109.47517 * 60.00090 * 12 11 9 38 38 H 1.09004 * 109.45876 * 292.13172 * 15 13 12 39 39 H 1.09004 * 109.46071 * 52.08787 * 15 13 12 40 40 H 0.97006 * 119.99300 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.16770 * 197.97783 * 25 16 15 42 42 H 1.09003 * 109.12156 * 78.74830 * 25 16 15 43 43 H 1.09003 * 109.45098 * 199.98782 * 26 25 16 44 44 H 1.08995 * 109.45753 * 80.05549 * 26 25 16 45 45 H 1.09003 * 109.58836 * 331.61862 * 27 26 25 46 46 H 1.08995 * 109.59112 * 211.19185 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2527 3.6574 -0.0005 7 6 4.0588 2.5332 0.0000 8 6 3.4450 1.2752 -0.0050 9 6 4.2570 0.0435 -0.0113 10 8 3.7125 -1.0437 -0.0151 11 7 5.6024 0.1233 -0.0128 12 6 6.4087 -1.0997 -0.0197 13 6 7.8938 -0.7316 -0.0207 14 1 8.1030 -0.0682 -0.8600 15 6 8.7442 -2.0180 -0.1553 16 7 10.1382 -1.6609 -0.3438 17 6 10.6098 -1.4977 -1.6190 18 1 9.9340 -1.2155 -2.4127 19 6 11.9566 -1.6949 -1.8914 20 7 12.7188 -2.3232 -1.0215 21 14 12.6871 -1.0684 -3.4924 22 1 11.6283 -0.4021 -4.2924 23 1 13.7695 -0.0960 -3.1955 24 1 13.2443 -2.2095 -4.2622 25 6 11.0661 -1.4670 0.7864 26 6 10.3896 -0.6947 1.9285 27 6 9.5260 0.4096 1.3531 28 8 8.2100 -0.0923 1.1609 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2485 4.3865 0.0001 33 1 3.6934 4.6434 -0.0005 34 1 5.1349 2.6239 0.0000 35 1 6.0368 0.9906 -0.0102 36 1 6.1811 -1.6900 0.8680 37 1 6.1785 -1.6818 -0.9120 38 1 8.6420 -2.6172 0.7495 39 1 8.3978 -2.5943 -1.0133 40 1 13.6600 -2.4607 -1.2118 41 1 11.9367 -0.9082 0.4429 42 1 11.3886 -2.4409 1.1548 43 1 11.1525 -0.2597 2.5743 44 1 9.7682 -1.3761 2.5094 45 1 9.9367 0.7341 0.3970 46 1 9.4988 1.2507 2.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073753474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:22 Heat of formation + Delta-G solvation = -70.506531 kcal Electronic energy + Delta-G solvation = -29170.353346 eV Core-core repulsion = 25060.842219 eV Total energy + Delta-G solvation = -4109.511127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93270 -40.71871 -39.87772 -38.89526 -36.99483 -35.94131 -34.11718 -33.49769 -33.15981 -31.85163 -30.10731 -28.24444 -27.35029 -27.06569 -25.56711 -24.32630 -23.72150 -22.30527 -21.75562 -21.27053 -19.59615 -18.88108 -18.66547 -18.15551 -17.60607 -17.14573 -17.10116 -16.83271 -16.37958 -16.08707 -15.91258 -15.82418 -15.50100 -15.17355 -14.96428 -14.72875 -14.44187 -14.23400 -14.02792 -13.73133 -13.59213 -13.53006 -13.12833 -12.99689 -12.80220 -12.70605 -12.48259 -12.38281 -12.19772 -12.04954 -11.76877 -11.47076 -11.30758 -11.23422 -11.03503 -10.66054 -10.54031 -10.27316 -10.13600 -9.53765 -8.72905 -7.89504 -5.36886 -0.34141 0.24247 1.44943 1.47663 1.57309 1.86993 2.04503 2.12680 2.49596 2.75795 2.81781 3.25204 3.28316 3.56069 3.71752 3.79919 3.99120 4.07206 4.14567 4.22844 4.25453 4.36274 4.39973 4.40476 4.49697 4.54349 4.58945 4.68767 4.71452 4.75351 4.84951 4.90350 4.92162 5.09796 5.15079 5.19731 5.25548 5.37528 5.43409 5.47467 5.61720 5.75685 6.20960 6.35568 6.51063 6.75047 6.75312 7.14149 7.21257 7.86212 8.27506 9.16437 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.002492 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.267038 B =11234.095333 C =11297.555525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.348 3.652 4 N -0.560 5.560 5 C 0.164 3.836 6 C -0.205 4.205 7 C -0.004 4.004 8 C -0.235 4.235 9 C 0.558 3.442 10 O -0.566 6.566 11 N -0.706 5.706 12 C 0.144 3.856 13 C 0.089 3.911 14 H 0.049 0.951 15 C 0.123 3.877 16 N -0.606 5.606 17 C -0.267 4.267 18 H 0.069 0.931 19 C -0.047 4.047 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.296 1.296 25 C 0.185 3.815 26 C -0.165 4.165 27 C 0.091 3.909 28 O -0.392 6.392 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.203 0.797 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.249 0.751 41 H 0.047 0.953 42 H -0.008 1.008 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.042 0.958 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.718 16.015 4.269 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.168 3.832 4 N -0.285 5.285 5 C 0.007 3.993 6 C -0.225 4.225 7 C -0.030 4.030 8 C -0.241 4.241 9 C 0.346 3.654 10 O -0.446 6.446 11 N -0.359 5.359 12 C 0.020 3.980 13 C 0.027 3.973 14 H 0.067 0.933 15 C -0.005 4.005 16 N -0.328 5.328 17 C -0.397 4.397 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.223 1.223 25 C 0.060 3.940 26 C -0.204 4.204 27 C 0.015 3.985 28 O -0.311 6.311 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.202 0.798 34 H 0.185 0.815 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.010 0.990 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.850 14.797 4.403 25.943 hybrid contribution 1.977 -0.069 -1.019 2.225 sum -18.873 14.728 3.385 24.178 Atomic orbital electron populations 1.23107 0.76075 1.04379 1.02612 1.86495 1.24079 1.24325 1.85956 1.20098 0.88580 0.85494 0.88992 1.67540 1.40593 0.99169 1.21167 1.23456 0.94357 0.93716 0.87730 1.22395 0.94230 1.01002 1.04854 1.22037 1.02226 0.89645 0.89101 1.20035 0.91435 0.95351 1.17290 1.18182 0.82251 0.88697 0.76241 1.90794 1.72473 1.30222 1.51151 1.45671 1.05071 1.10478 1.74666 1.21189 0.87460 0.86990 1.02389 1.22260 0.92351 0.95437 0.87277 0.93340 1.21561 0.84804 0.94781 0.99393 1.44052 1.05595 1.80352 1.02785 1.19548 0.93046 1.39789 0.87360 0.91365 1.25776 0.98375 0.99281 1.00776 1.70244 1.05996 1.43982 1.37904 0.85249 0.78307 0.77393 0.79742 1.18964 1.21493 1.22307 1.20784 0.91567 0.95625 0.86016 1.22626 1.00060 0.99096 0.98589 1.22091 0.81161 0.95109 1.00090 1.86109 1.31531 1.74991 1.38444 0.87080 0.91782 0.91832 0.78038 0.79796 0.81461 0.75103 0.91598 0.90346 0.93982 0.93126 0.94131 0.93439 0.99021 0.89671 0.92257 0.93945 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.81 16 2 O -0.30 -8.77 8.58 -66.32 -0.57 -9.34 16 3 C 0.35 9.01 7.51 85.13 0.64 9.65 16 4 N -0.56 -11.34 9.21 -308.00 -2.84 -14.17 16 5 C 0.16 1.97 11.17 84.71 0.95 2.92 16 6 C -0.21 -2.03 10.09 22.32 0.23 -1.81 16 7 C 0.00 -0.07 9.64 22.72 0.22 0.15 16 8 C -0.23 -5.75 5.90 -19.91 -0.12 -5.87 16 9 C 0.56 16.95 7.77 86.69 0.67 17.62 16 10 O -0.57 -21.89 15.19 16.82 0.26 -21.63 16 11 N -0.71 -18.69 5.45 -466.29 -2.54 -21.22 16 12 C 0.14 4.38 5.34 86.38 0.46 4.84 16 13 C 0.09 2.95 2.68 31.21 0.08 3.03 16 14 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.12 5.00 5.12 87.25 0.45 5.45 16 16 N -0.61 -29.27 2.23 -698.13 -1.55 -30.83 16 17 C -0.27 -14.12 9.46 84.03 0.80 -13.32 16 18 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 19 C -0.05 -2.53 4.89 84.86 0.41 -2.11 16 20 N -0.94 -54.25 11.00 21.65 0.24 -54.01 16 21 Si 0.96 43.69 29.58 68.60 2.03 45.72 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 C 0.18 8.71 4.70 86.38 0.41 9.12 16 26 C -0.16 -5.83 5.78 30.31 0.18 -5.66 16 27 C 0.09 2.88 6.37 71.50 0.46 3.34 16 28 O -0.39 -12.59 9.38 -117.91 -1.11 -13.70 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.17 1.67 6.51 -2.91 -0.02 1.65 16 35 H 0.41 8.60 6.56 -92.70 -0.61 7.99 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.72 8.11 -2.38 -0.02 1.70 16 39 H 0.05 2.09 7.98 -2.38 -0.02 2.07 16 40 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 41 H 0.05 2.48 6.37 -2.39 -0.02 2.47 16 42 H -0.01 -0.44 8.04 -2.39 -0.02 -0.46 16 43 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 45 H 0.04 1.53 7.40 -2.39 -0.02 1.51 16 46 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -74.96 375.08 1.31 -73.65 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.39 Total: 16.37 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 7.00 Total: 29.16 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -6.69 Total: -120.23 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.42 Total: -44.67 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.96 1.31 -73.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073753474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.147 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds