Wall clock time and date at job start Tue Mar 31 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34665 * 119.70508 * 2 1 4 4 O 1.21960 * 119.95910 * 359.97438 * 3 2 1 5 5 C 1.41241 * 120.08819 * 179.97438 * 3 2 1 6 6 C 1.36116 * 119.50529 * 0.02562 * 5 3 2 7 7 C 1.40407 * 119.41955 * 359.73516 * 6 5 3 8 8 C 1.36300 * 119.90047 * 0.51642 * 7 6 5 9 9 C 1.47883 * 119.75133 * 179.78119 * 8 7 6 10 10 O 1.21539 * 119.99838 * 173.53721 * 9 8 7 11 11 N 1.34772 * 120.00223 * 353.52827 * 9 8 7 12 12 C 1.46499 * 120.00110 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47252 * 180.02562 * 12 11 9 14 14 H 1.08995 * 108.44941 * 57.87826 * 13 12 11 15 15 C 1.47478 * 108.55010 * 175.84816 * 13 12 11 16 16 N 1.50118 * 106.48653 * 178.01070 * 15 13 12 17 17 C 1.36936 * 120.63492 * 111.37316 * 16 15 13 18 18 H 1.07994 * 120.00085 * 215.53224 * 17 16 15 19 19 C 1.38809 * 119.99961 * 35.53885 * 17 16 15 20 20 N 1.31627 * 119.99946 * 200.36533 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 20.35708 * 19 17 16 22 22 H 1.48496 * 109.47456 * 264.79267 * 21 19 17 23 23 H 1.48500 * 109.47344 * 24.79472 * 21 19 17 24 24 H 1.48497 * 109.47006 * 144.79349 * 21 19 17 25 25 C 1.43428 * 118.72905 * 291.10164 * 16 15 13 26 26 C 1.55324 * 116.23830 * 89.62533 * 25 16 15 27 27 C 1.55191 * 108.87648 * 319.46376 * 26 25 16 28 28 O 1.39645 * 110.56467 * 322.14413 * 27 26 25 29 29 H 1.09003 * 109.47198 * 264.32021 * 1 2 3 30 30 H 1.09004 * 109.47068 * 24.31168 * 1 2 3 31 31 H 1.09004 * 109.47488 * 144.31137 * 1 2 3 32 32 H 1.07998 * 120.24474 * 179.97438 * 5 3 2 33 33 H 1.07996 * 120.28581 * 180.02562 * 6 5 3 34 34 H 1.08000 * 120.04906 * 180.27277 * 7 6 5 35 35 H 0.97001 * 119.99937 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46959 * 60.00260 * 12 11 9 37 37 H 1.08994 * 109.47699 * 300.00475 * 12 11 9 38 38 H 1.09002 * 110.10920 * 58.80257 * 15 13 12 39 39 H 1.08999 * 110.15641 * 297.24478 * 15 13 12 40 40 H 0.96999 * 119.99473 * 179.97438 * 20 19 17 41 41 H 1.09001 * 108.12476 * 211.38731 * 25 16 15 42 42 H 1.08996 * 108.12590 * 328.08020 * 25 16 15 43 43 H 1.09006 * 109.57369 * 79.28004 * 26 25 16 44 44 H 1.09003 * 109.57295 * 199.64529 * 26 25 16 45 45 H 1.08994 * 109.25937 * 82.42049 * 27 26 25 46 46 H 1.09003 * 109.25777 * 201.90564 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5447 1.1791 0.0005 6 6 4.2230 -0.0010 0.0005 7 6 3.5063 -1.2084 0.0056 8 6 2.1435 -1.1896 -0.0001 9 6 1.3920 -2.4632 0.0004 10 8 0.1819 -2.4548 0.1138 11 7 2.0489 -3.6333 -0.1251 12 6 1.3043 -4.8950 -0.1251 13 6 2.2803 -6.0632 -0.2795 14 1 3.0014 -6.0204 0.5367 15 6 1.5227 -7.3243 -0.1765 16 7 2.5125 -8.4340 -0.3831 17 6 2.8524 -9.2669 0.6493 18 1 3.8626 -9.6395 0.7324 19 6 1.8984 -9.6325 1.5890 20 7 2.2741 -10.0796 2.7686 21 14 0.0814 -9.4897 1.1797 22 1 -0.4393 -8.1935 1.6836 23 1 -0.1013 -9.5578 -0.2925 24 1 -0.6599 -10.6044 1.8224 25 6 3.0908 -8.6087 -1.6839 26 6 4.4014 -7.8234 -1.9638 27 6 4.2761 -6.4030 -1.3513 28 8 2.9785 -5.9125 -1.5112 29 1 -0.3634 -0.1017 1.0226 30 1 -0.3633 0.9366 -0.4231 31 1 -0.3634 -0.8347 -0.5995 32 1 4.0824 2.1157 0.0001 33 1 5.3029 -0.0085 0.0014 34 1 4.0342 -2.1506 0.0101 35 1 3.0146 -3.6401 -0.2153 36 1 0.5974 -4.8997 -0.9548 37 1 0.7620 -4.9970 0.8148 38 1 0.7531 -7.3632 -0.9475 39 1 1.0678 -7.4097 0.8103 40 1 1.6074 -10.3347 3.4254 41 1 3.2948 -9.6702 -1.8245 42 1 2.3526 -8.3064 -2.4266 43 1 5.2436 -8.3444 -1.5085 44 1 4.5571 -7.7446 -3.0398 45 1 4.5153 -6.4473 -0.2889 46 1 4.9769 -5.7334 -1.8500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073759575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:22 Heat of formation + Delta-G solvation = -29.880931 kcal Electronic energy + Delta-G solvation = -29649.717611 eV Core-core repulsion = 25541.968143 eV Total energy + Delta-G solvation = -4107.749468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85615 -40.05146 -39.23309 -37.01757 -35.72178 -35.30519 -34.49244 -32.66820 -31.90742 -30.67693 -28.94602 -27.84647 -26.29836 -25.78297 -24.67551 -23.00236 -22.65646 -21.59650 -21.15620 -19.82578 -18.50055 -17.72000 -17.31443 -17.17456 -16.72332 -16.38406 -16.12118 -15.74527 -15.68218 -15.12910 -14.95314 -14.85306 -14.48712 -14.11101 -13.85589 -13.39718 -13.17378 -13.07852 -12.97937 -12.73546 -12.71543 -12.51553 -12.42745 -12.16256 -12.04882 -11.68554 -11.37669 -10.88839 -10.70125 -10.52751 -10.46684 -10.38558 -10.21042 -10.00269 -9.91854 -9.71097 -9.35627 -9.20425 -8.72596 -8.37594 -7.04989 -6.12920 -3.56131 0.06554 1.29480 2.10560 2.51354 2.82656 3.18770 3.32922 3.38705 3.43011 4.00881 4.10743 4.24236 4.38016 4.46805 4.56859 4.76751 4.81042 5.12308 5.18511 5.21796 5.25701 5.25974 5.42664 5.46155 5.54275 5.59249 5.61516 5.64310 5.69186 5.77503 5.81106 5.85166 5.95957 6.00686 6.10932 6.17338 6.30508 6.39526 6.40123 6.60912 6.65890 6.76489 7.09896 7.46222 7.65399 7.74633 7.85933 8.26018 8.78991 9.54620 9.97838 11.02383 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.002942 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.704252 B = 9516.005514 C =10361.157192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.475 5.475 3 C 0.511 3.489 4 O -0.549 6.549 5 C -0.219 4.219 6 C -0.026 4.026 7 C -0.184 4.184 8 C 0.123 3.877 9 C 0.551 3.449 10 O -0.523 6.523 11 N -0.696 5.696 12 C 0.112 3.888 13 C 0.062 3.938 14 H 0.076 0.924 15 C 0.100 3.900 16 N -0.598 5.598 17 C -0.272 4.272 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.286 1.286 23 H -0.267 1.267 24 H -0.299 1.299 25 C 0.158 3.842 26 C -0.170 4.170 27 C 0.061 3.939 28 O -0.355 6.355 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.265 0.735 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 16.023 -6.999 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.186 5.186 3 C 0.312 3.688 4 O -0.431 6.431 5 C -0.241 4.241 6 C -0.047 4.047 7 C -0.209 4.209 8 C 0.011 3.989 9 C 0.336 3.664 10 O -0.401 6.401 11 N -0.348 5.348 12 C -0.012 4.012 13 C 0.003 3.997 14 H 0.094 0.906 15 C -0.025 4.025 16 N -0.319 5.319 17 C -0.400 4.400 18 H 0.100 0.900 19 C -0.166 4.166 20 N -0.541 5.541 21 Si 0.705 3.295 22 H -0.213 1.213 23 H -0.191 1.191 24 H -0.227 1.227 25 C 0.030 3.970 26 C -0.211 4.211 27 C -0.016 4.016 28 O -0.273 6.273 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.242 0.758 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.024 16.634 -6.918 18.267 hybrid contribution -0.259 -0.223 0.126 0.364 sum 2.765 16.411 -6.792 17.975 Atomic orbital electron populations 1.22616 0.75869 1.05577 1.04992 1.45451 1.10081 1.05065 1.58000 1.17352 0.89328 0.82537 0.79551 1.90943 1.69985 1.29072 1.53104 1.22408 0.92620 1.00380 1.08687 1.21415 1.01151 0.91324 0.90852 1.20935 0.91117 1.00318 1.08488 1.20155 0.92460 0.86835 0.99404 1.17843 0.87091 0.83295 0.78176 1.90779 1.13259 1.86671 1.49354 1.45778 1.11554 1.05326 1.72108 1.21944 0.95077 0.80772 1.03408 1.22160 0.95892 0.94480 0.87202 0.90607 1.21457 0.92828 0.86900 1.01273 1.44142 1.48561 1.31471 1.07771 1.18803 0.95640 1.23290 1.02266 0.89994 1.25446 0.97907 0.97390 0.95895 1.69848 1.33980 1.46021 1.04205 0.86947 0.86846 0.76590 0.79137 1.21308 1.19120 1.22656 1.20338 0.92496 0.97440 0.86733 1.23544 1.01405 0.96582 0.99572 1.22473 0.83876 0.94673 1.00612 1.87604 1.25039 1.81496 1.33174 0.90425 0.89513 0.86827 0.82879 0.83778 0.83220 0.75762 0.90084 0.89549 0.93337 0.89705 0.92539 0.93359 0.94952 0.91924 0.92353 0.92238 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 9.15 59.85 0.55 1.12 16 2 N -0.47 -5.63 3.02 -122.80 -0.37 -6.00 16 3 C 0.51 6.49 7.43 -15.17 -0.11 6.37 16 4 O -0.55 -8.77 16.56 4.96 0.08 -8.69 16 5 C -0.22 -2.00 10.00 -39.20 -0.39 -2.39 16 6 C -0.03 -0.17 10.08 -39.53 -0.40 -0.57 16 7 C -0.18 -1.38 9.49 -39.46 -0.37 -1.76 16 8 C 0.12 1.27 6.63 -82.33 -0.55 0.73 16 9 C 0.55 6.49 7.65 -12.31 -0.09 6.40 16 10 O -0.52 -7.49 13.18 5.33 0.07 -7.42 16 11 N -0.70 -7.51 5.37 -61.24 -0.33 -7.84 16 12 C 0.11 1.46 5.24 -4.04 -0.02 1.44 16 13 C 0.06 0.94 2.11 -29.39 -0.06 0.88 16 14 H 0.08 1.18 6.77 -51.93 -0.35 0.82 16 15 C 0.10 1.91 3.51 -4.68 -0.02 1.89 16 16 N -0.60 -12.81 2.20 -174.21 -0.38 -13.19 16 17 C -0.27 -6.97 9.96 -15.06 -0.15 -7.12 16 18 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 19 C 0.03 0.92 5.25 -17.43 -0.09 0.83 16 20 N -0.90 -25.87 13.97 55.49 0.78 -25.10 16 21 Si 0.88 20.76 24.80 -169.99 -4.22 16.54 16 22 H -0.29 -6.45 6.70 56.52 0.38 -6.07 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 25 C 0.16 2.93 5.33 -4.43 -0.02 2.91 16 26 C -0.17 -2.55 6.75 -24.34 -0.16 -2.72 16 27 C 0.06 0.83 6.38 38.32 0.24 1.08 16 28 O -0.36 -5.14 9.53 -31.95 -0.30 -5.45 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.98 7.23 -51.93 -0.38 0.61 16 31 H 0.11 1.34 5.58 -51.93 -0.29 1.05 16 32 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.15 0.75 6.35 -52.49 -0.33 0.41 16 35 H 0.41 3.47 6.34 -40.82 -0.26 3.21 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.08 1.76 4.46 -51.93 -0.23 1.52 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 0.93 7.98 -51.93 -0.41 0.52 16 42 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -32.29 363.28 -7.26 -39.54 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.40 Total: 3.03 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.65 Total: 9.10 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.31 Total: -52.13 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.15 Total: -21.56 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.22 Total: 16.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.29 -7.26 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073759575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.660 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds