Wall clock time and date at job start Tue Mar 31 2020 18:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34665 * 119.70508 * 2 1 4 4 O 1.21960 * 119.95910 * 359.97438 * 3 2 1 5 5 C 1.41241 * 120.08819 * 179.97438 * 3 2 1 6 6 C 1.36116 * 119.50529 * 0.02562 * 5 3 2 7 7 C 1.40407 * 119.41955 * 359.73516 * 6 5 3 8 8 C 1.36300 * 119.90047 * 0.51642 * 7 6 5 9 9 C 1.47883 * 119.75133 * 179.78119 * 8 7 6 10 10 O 1.21539 * 119.99838 * 173.53721 * 9 8 7 11 11 N 1.34772 * 120.00223 * 353.52827 * 9 8 7 12 12 C 1.46499 * 120.00110 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47252 * 180.02562 * 12 11 9 14 14 H 1.08995 * 108.44941 * 57.87826 * 13 12 11 15 15 C 1.47478 * 108.55010 * 175.84816 * 13 12 11 16 16 N 1.50118 * 106.48653 * 178.01070 * 15 13 12 17 17 C 1.36936 * 120.63492 * 111.37316 * 16 15 13 18 18 H 1.07994 * 120.00085 * 215.53224 * 17 16 15 19 19 C 1.38809 * 119.99961 * 35.53885 * 17 16 15 20 20 N 1.31627 * 119.99946 * 200.36533 * 19 17 16 21 21 Si 1.86800 * 120.00133 * 20.35708 * 19 17 16 22 22 H 1.48496 * 109.47456 * 264.79267 * 21 19 17 23 23 H 1.48500 * 109.47344 * 24.79472 * 21 19 17 24 24 H 1.48497 * 109.47006 * 144.79349 * 21 19 17 25 25 C 1.43428 * 118.72905 * 291.10164 * 16 15 13 26 26 C 1.55324 * 116.23830 * 89.62533 * 25 16 15 27 27 C 1.55191 * 108.87648 * 319.46376 * 26 25 16 28 28 O 1.39645 * 110.56467 * 322.14413 * 27 26 25 29 29 H 1.09003 * 109.47198 * 264.32021 * 1 2 3 30 30 H 1.09004 * 109.47068 * 24.31168 * 1 2 3 31 31 H 1.09004 * 109.47488 * 144.31137 * 1 2 3 32 32 H 1.07998 * 120.24474 * 179.97438 * 5 3 2 33 33 H 1.07996 * 120.28581 * 180.02562 * 6 5 3 34 34 H 1.08000 * 120.04906 * 180.27277 * 7 6 5 35 35 H 0.97001 * 119.99937 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46959 * 60.00260 * 12 11 9 37 37 H 1.08994 * 109.47699 * 300.00475 * 12 11 9 38 38 H 1.09002 * 110.10920 * 58.80257 * 15 13 12 39 39 H 1.08999 * 110.15641 * 297.24478 * 15 13 12 40 40 H 0.96999 * 119.99473 * 179.97438 * 20 19 17 41 41 H 1.09001 * 108.12476 * 211.38731 * 25 16 15 42 42 H 1.08996 * 108.12590 * 328.08020 * 25 16 15 43 43 H 1.09006 * 109.57369 * 79.28004 * 26 25 16 44 44 H 1.09003 * 109.57295 * 199.64529 * 26 25 16 45 45 H 1.08994 * 109.25937 * 82.42049 * 27 26 25 46 46 H 1.09003 * 109.25777 * 201.90564 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5447 1.1791 0.0005 6 6 4.2230 -0.0010 0.0005 7 6 3.5063 -1.2084 0.0056 8 6 2.1435 -1.1896 -0.0001 9 6 1.3920 -2.4632 0.0004 10 8 0.1819 -2.4548 0.1138 11 7 2.0489 -3.6333 -0.1251 12 6 1.3043 -4.8950 -0.1251 13 6 2.2803 -6.0632 -0.2795 14 1 3.0014 -6.0204 0.5367 15 6 1.5227 -7.3243 -0.1765 16 7 2.5125 -8.4340 -0.3831 17 6 2.8524 -9.2669 0.6493 18 1 3.8626 -9.6395 0.7324 19 6 1.8984 -9.6325 1.5890 20 7 2.2741 -10.0796 2.7686 21 14 0.0814 -9.4897 1.1797 22 1 -0.4393 -8.1935 1.6836 23 1 -0.1013 -9.5578 -0.2925 24 1 -0.6599 -10.6044 1.8224 25 6 3.0908 -8.6087 -1.6839 26 6 4.4014 -7.8234 -1.9638 27 6 4.2761 -6.4030 -1.3513 28 8 2.9785 -5.9125 -1.5112 29 1 -0.3634 -0.1017 1.0226 30 1 -0.3633 0.9366 -0.4231 31 1 -0.3634 -0.8347 -0.5995 32 1 4.0824 2.1157 0.0001 33 1 5.3029 -0.0085 0.0014 34 1 4.0342 -2.1506 0.0101 35 1 3.0146 -3.6401 -0.2153 36 1 0.5974 -4.8997 -0.9548 37 1 0.7620 -4.9970 0.8148 38 1 0.7531 -7.3632 -0.9475 39 1 1.0678 -7.4097 0.8103 40 1 1.6074 -10.3347 3.4254 41 1 3.2948 -9.6702 -1.8245 42 1 2.3526 -8.3064 -2.4266 43 1 5.2436 -8.3444 -1.5085 44 1 4.5571 -7.7446 -3.0398 45 1 4.5153 -6.4473 -0.2889 46 1 4.9769 -5.7334 -1.8500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073759575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:21 Heat of formation + Delta-G solvation = -53.289461 kcal Electronic energy + Delta-G solvation = -29650.732681 eV Core-core repulsion = 25541.968143 eV Total energy + Delta-G solvation = -4108.764539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68749 -41.14688 -40.32782 -37.91676 -37.02139 -36.54483 -35.33584 -33.96571 -33.68241 -31.62712 -30.26156 -28.69269 -27.50490 -27.27506 -25.68198 -24.22134 -23.65310 -22.79683 -22.12742 -21.32998 -19.39315 -18.95696 -18.50733 -18.05456 -17.87390 -17.41068 -17.36319 -16.95282 -16.80397 -16.17733 -16.06671 -15.84188 -15.63544 -15.57022 -14.95775 -14.65654 -14.44069 -14.36975 -14.10612 -14.02546 -13.86749 -13.65837 -13.39341 -13.19724 -13.10646 -13.01130 -12.85388 -12.45610 -12.28699 -11.84948 -11.76149 -11.59920 -11.47224 -11.28858 -11.18206 -10.89139 -10.72253 -10.42106 -10.29430 -9.18723 -8.83906 -8.19870 -5.58271 -0.66488 0.57091 1.26649 1.29391 1.43958 1.52574 1.63512 1.94615 2.40342 2.56264 2.90043 2.96036 3.25160 3.30190 3.54584 3.83465 3.90851 3.99676 4.10548 4.20847 4.27624 4.33221 4.34507 4.39096 4.41333 4.46020 4.50332 4.63644 4.68474 4.75626 4.77889 4.83973 4.93708 4.94814 5.06273 5.13483 5.17137 5.21712 5.25427 5.35792 5.38073 5.84889 5.91302 6.19199 6.26684 6.30017 6.79272 6.89048 6.93705 7.59041 8.06970 8.99541 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.002942 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.704252 B = 9516.005514 C =10361.157192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.481 5.481 3 C 0.494 3.506 4 O -0.600 6.600 5 C -0.229 4.229 6 C -0.004 4.004 7 C -0.153 4.153 8 C 0.093 3.907 9 C 0.554 3.446 10 O -0.555 6.555 11 N -0.684 5.684 12 C 0.122 3.878 13 C 0.075 3.925 14 H 0.075 0.925 15 C 0.097 3.903 16 N -0.610 5.610 17 C -0.251 4.251 18 H 0.049 0.951 19 C -0.018 4.018 20 N -0.948 5.948 21 Si 0.932 3.068 22 H -0.268 1.268 23 H -0.261 1.261 24 H -0.312 1.312 25 C 0.149 3.851 26 C -0.164 4.164 27 C 0.060 3.940 28 O -0.350 6.350 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.419 0.581 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 17.317 -8.591 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.193 5.193 3 C 0.298 3.702 4 O -0.487 6.487 5 C -0.250 4.250 6 C -0.025 4.025 7 C -0.177 4.177 8 C -0.016 4.016 9 C 0.340 3.660 10 O -0.435 6.435 11 N -0.337 5.337 12 C -0.003 4.003 13 C 0.016 3.984 14 H 0.092 0.908 15 C -0.028 4.028 16 N -0.333 5.333 17 C -0.381 4.381 18 H 0.067 0.933 19 C -0.215 4.215 20 N -0.592 5.592 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.185 1.185 24 H -0.241 1.241 25 C 0.023 3.977 26 C -0.204 4.204 27 C -0.017 4.017 28 O -0.268 6.268 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.186 0.814 33 H 0.209 0.791 34 H 0.202 0.798 35 H 0.258 0.742 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.080 17.925 -8.561 20.504 hybrid contribution -0.728 -0.701 0.536 1.144 sum 4.351 17.224 -8.025 19.494 Atomic orbital electron populations 1.22478 0.76579 1.04949 1.04567 1.45447 1.09989 1.05627 1.58198 1.17990 0.90753 0.82013 0.79453 1.90906 1.71087 1.30624 1.56085 1.22572 0.90750 1.02394 1.09314 1.21895 1.03243 0.89590 0.87774 1.21503 0.89866 1.02277 1.04103 1.20143 0.93390 0.85496 1.02619 1.18018 0.86768 0.83833 0.77373 1.90770 1.14776 1.87117 1.50832 1.45527 1.12059 1.04242 1.71823 1.21640 0.94492 0.81044 1.03096 1.21777 0.95728 0.93286 0.87659 0.90758 1.21494 0.92852 0.87921 1.00489 1.44222 1.49216 1.32057 1.07819 1.18663 0.94089 1.22768 1.02536 0.93301 1.25978 1.01474 0.98192 0.95837 1.69960 1.34971 1.48876 1.05415 0.86031 0.82351 0.76737 0.78874 1.19459 1.18546 1.24096 1.20518 0.94447 0.97367 0.85411 1.23454 0.98665 0.97010 1.01307 1.22593 0.84147 0.94512 1.00470 1.87625 1.25462 1.81141 1.32588 0.90856 0.90176 0.87195 0.81414 0.79056 0.79816 0.74172 0.90272 0.90170 0.92595 0.91537 0.92841 0.95133 0.94121 0.92535 0.89816 0.93227 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 9.15 127.77 1.17 2.49 16 2 N -0.48 -11.15 3.02 -660.60 -1.99 -13.14 16 3 C 0.49 12.30 7.43 85.00 0.63 12.93 16 4 O -0.60 -19.82 16.56 -5.18 -0.09 -19.91 16 5 C -0.23 -3.54 10.00 22.51 0.23 -3.32 16 6 C 0.00 -0.03 10.08 22.30 0.22 0.19 16 7 C -0.15 -1.58 9.49 22.35 0.21 -1.36 16 8 C 0.09 1.71 6.63 40.45 0.27 1.98 16 9 C 0.55 11.98 7.65 86.80 0.66 12.64 16 10 O -0.55 -15.58 13.18 -3.84 -0.05 -15.63 16 11 N -0.68 -12.65 5.37 -465.95 -2.50 -15.15 16 12 C 0.12 2.91 5.24 86.38 0.45 3.36 16 13 C 0.08 2.08 2.11 28.87 0.06 2.15 16 14 H 0.07 2.12 6.77 -2.39 -0.02 2.10 16 15 C 0.10 3.51 3.51 83.95 0.30 3.81 16 16 N -0.61 -25.60 2.20 -705.08 -1.55 -27.16 16 17 C -0.25 -13.02 9.96 84.03 0.84 -12.19 16 18 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 19 C -0.02 -1.00 5.25 84.86 0.45 -0.55 16 20 N -0.95 -56.00 13.97 21.65 0.30 -55.70 16 21 Si 0.93 43.24 24.80 68.60 1.70 44.94 16 22 H -0.27 -11.57 6.70 99.48 0.67 -10.90 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 25 C 0.15 5.32 5.33 87.75 0.47 5.78 16 26 C -0.16 -4.43 6.75 32.14 0.22 -4.21 16 27 C 0.06 1.39 6.38 72.73 0.46 1.85 16 28 O -0.35 -8.77 9.53 -137.24 -1.31 -10.08 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.96 7.23 -2.38 -0.02 1.94 16 31 H 0.11 2.68 5.58 -2.39 -0.01 2.67 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.19 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.18 0.63 6.35 -2.91 -0.02 0.61 16 35 H 0.42 5.25 6.34 -92.71 -0.59 4.66 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 39 H 0.07 2.67 4.46 -2.39 -0.01 2.66 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.03 1.16 7.98 -2.39 -0.02 1.14 16 42 H 0.04 1.37 7.97 -2.39 -0.02 1.35 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 45 H 0.05 1.27 6.66 -2.39 -0.02 1.26 16 46 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -74.29 363.28 1.53 -72.76 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.39 Total: 13.53 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 6.63 Total: 25.54 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -5.75 Total: -111.15 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.44 Total: -45.62 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.70 Total: 44.94 kcal Total: -74.29 1.53 -72.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073759575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.468 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds