Wall clock time and date at job start Tue Mar 31 2020 19:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35644 * 117.00227 * 2 1 4 4 C 1.39348 * 120.54146 * 0.26334 * 3 2 1 5 5 C 1.38301 * 118.44114 * 180.26704 * 4 3 2 6 6 C 1.38766 * 119.44577 * 359.72581 * 5 4 3 7 7 N 1.31380 * 121.06384 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69759 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.78316 * 180.02562 * 8 7 6 10 10 O 1.21557 * 119.99922 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99695 * 0.02562 * 9 8 7 12 12 C 1.46507 * 119.99731 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47202 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.46283 * 304.99132 * 13 12 11 15 15 C 1.54796 * 109.46909 * 185.00044 * 13 12 11 16 16 N 1.45126 * 109.52992 * 172.10535 * 15 13 12 17 17 C 1.36932 * 118.75419 * 269.29048 * 16 15 13 18 18 H 1.07999 * 119.99965 * 26.66452 * 17 16 15 19 19 C 1.38814 * 119.99858 * 206.66111 * 17 16 15 20 20 N 1.31622 * 119.99793 * 16.65807 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 196.65245 * 19 17 16 22 22 H 1.48496 * 109.47263 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47245 * 300.00294 * 21 19 17 24 24 H 1.48505 * 109.47012 * 60.00303 * 21 19 17 25 25 C 1.47499 * 122.48329 * 89.57046 * 16 15 13 26 26 C 1.53949 * 110.82317 * 317.97222 * 25 16 15 27 27 C 1.51537 * 109.72755 * 320.31040 * 26 25 16 28 28 O 1.38016 * 109.46599 * 64.98326 * 13 12 11 29 29 H 1.08993 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47404 * 300.00539 * 1 2 3 31 31 H 1.09004 * 109.47266 * 60.00413 * 1 2 3 32 32 H 1.08004 * 120.77826 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.27989 * 179.75466 * 5 4 3 34 34 H 1.08001 * 119.46957 * 179.97438 * 6 5 4 35 35 H 0.96992 * 120.00346 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.46771 * 59.99778 * 12 11 9 37 37 H 1.09004 * 109.46896 * 299.99937 * 12 11 9 38 38 H 1.09005 * 109.46492 * 52.08648 * 15 13 12 39 39 H 1.08999 * 109.46009 * 292.12417 * 15 13 12 40 40 H 0.97002 * 119.99641 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.17529 * 78.49713 * 25 16 15 42 42 H 1.09007 * 109.16444 * 197.69407 * 25 16 15 43 43 H 1.08996 * 109.46056 * 200.18150 * 26 25 16 44 44 H 1.09000 * 109.29615 * 80.33895 * 26 25 16 45 45 H 1.09003 * 109.58550 * 331.50860 * 27 26 25 46 46 H 1.09000 * 109.58890 * 211.07311 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 0.0055 5 6 1.9696 3.5928 -0.0004 6 6 3.3572 3.6011 -0.0057 7 7 4.0419 2.4798 -0.0058 8 6 3.4409 1.2949 -0.0003 9 6 4.2531 0.0597 0.0000 10 8 3.7073 -1.0265 0.0046 11 7 5.5986 0.1378 -0.0049 12 6 6.4034 -1.0863 -0.0040 13 6 7.8889 -0.7201 -0.0108 14 1 8.0973 -0.0636 -0.8557 15 6 8.7374 -2.0086 -0.1372 16 7 10.1314 -1.6545 -0.3313 17 6 10.6005 -1.5017 -1.6086 18 1 9.9251 -1.2158 -2.4014 19 6 11.9443 -1.7141 -1.8846 20 7 12.6974 -2.3670 -1.0249 21 14 12.6836 -1.0735 -3.4759 22 1 14.1244 -1.4288 -3.5306 23 1 11.9791 -1.6858 -4.6308 24 1 12.5350 0.4031 -3.5315 25 6 11.0633 -1.4588 0.7952 26 6 10.3888 -0.6710 1.9329 27 6 9.5253 0.4299 1.3508 28 8 8.2082 -0.0719 1.1651 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2174 2.3528 0.0095 33 1 1.4196 4.5222 -0.0003 34 1 3.8829 4.5446 -0.0108 35 1 6.0340 1.0045 -0.0089 36 1 6.1705 -1.6748 -0.8915 37 1 6.1767 -1.6696 0.8885 38 1 8.3886 -2.5911 -0.9900 39 1 8.6364 -2.6006 0.7724 40 1 13.6363 -2.5157 -1.2179 41 1 11.3823 -2.4317 1.1689 42 1 11.9360 -0.9070 0.4459 43 1 11.1535 -0.2320 2.5736 44 1 9.7678 -1.3472 2.5204 45 1 9.9344 0.7464 0.3913 46 1 9.5004 1.2763 2.0371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073865406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:36 Heat of formation + Delta-G solvation = -47.197770 kcal Electronic energy + Delta-G solvation = -29155.105711 eV Core-core repulsion = 25046.605328 eV Total energy + Delta-G solvation = -4108.500383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12849 -39.28745 -38.55286 -38.33917 -35.17909 -34.48688 -32.82026 -31.90207 -31.43723 -31.07290 -28.55509 -27.73948 -25.84337 -25.35442 -24.39460 -23.17302 -22.55218 -20.76990 -20.56994 -19.51942 -18.59772 -17.82190 -17.37838 -16.91100 -16.28371 -16.02213 -15.70187 -15.60322 -15.04958 -14.84803 -14.79193 -14.57240 -14.20519 -13.97490 -13.72596 -13.60995 -13.25930 -12.92993 -12.82137 -12.59686 -12.13071 -12.03255 -11.84436 -11.81530 -11.33315 -11.17252 -10.90865 -10.81177 -10.62389 -10.29688 -10.21939 -10.17606 -9.84022 -9.71391 -9.69380 -9.61816 -8.88409 -8.75441 -8.63089 -8.39298 -6.71739 -5.81466 -3.25763 0.41592 0.90047 2.77463 2.83594 3.24655 3.37092 3.42851 3.44049 3.70741 4.05096 4.23324 4.25916 4.39351 4.47777 4.62922 4.74586 4.77643 4.86530 5.13357 5.21635 5.26099 5.39029 5.52994 5.59673 5.63301 5.70831 5.77472 5.93756 6.00897 6.07339 6.11668 6.23519 6.33782 6.40809 6.58782 6.72003 6.76082 6.79182 6.87312 6.88610 7.37554 7.43703 7.65122 7.79560 7.82584 8.29518 8.41294 8.42993 9.20003 9.85029 10.31672 11.26155 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.002501 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.156842 B =11192.321162 C =11246.778793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.135 3.865 4 C -0.177 4.177 5 C -0.110 4.110 6 C 0.058 3.942 7 N -0.418 5.418 8 C 0.049 3.951 9 C 0.567 3.433 10 O -0.523 6.523 11 N -0.701 5.701 12 C 0.132 3.868 13 C 0.068 3.932 14 H 0.052 0.948 15 C 0.128 3.872 16 N -0.591 5.591 17 C -0.266 4.266 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.177 3.823 26 C -0.176 4.176 27 C 0.089 3.911 28 O -0.394 6.394 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.255 0.745 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.464 12.080 4.134 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.130 4.130 6 C -0.103 4.103 7 N -0.129 5.129 8 C -0.090 4.090 9 C 0.351 3.649 10 O -0.398 6.398 11 N -0.352 5.352 12 C 0.008 3.992 13 C 0.006 3.994 14 H 0.070 0.930 15 C -0.001 4.001 16 N -0.312 5.312 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.216 1.216 23 H -0.208 1.208 24 H -0.210 1.210 25 C 0.053 3.947 26 C -0.216 4.216 27 C 0.012 3.988 28 O -0.314 6.314 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.183 0.817 35 H 0.247 0.753 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.749 10.973 4.268 24.731 hybrid contribution -0.253 0.960 -1.016 1.420 sum -22.002 11.933 3.252 25.240 Atomic orbital electron populations 1.23221 0.78599 1.04746 1.01108 1.86442 1.20836 1.24474 1.86315 1.20071 0.92366 0.85781 0.93348 1.21749 1.01051 0.91847 1.05742 1.22204 0.95806 0.98389 0.96603 1.22732 0.91353 0.96453 0.99746 1.67657 1.39908 0.97411 1.07963 1.20797 0.88594 0.93029 1.06627 1.17594 0.82405 0.87145 0.77795 1.90826 1.71803 1.27496 1.49716 1.45809 1.05224 1.11075 1.73124 1.21472 0.88616 0.86383 1.02683 1.22614 0.92055 0.97353 0.87416 0.92987 1.21416 0.85964 0.93098 0.99650 1.43829 1.04264 1.80000 1.03148 1.19178 0.93148 1.40962 0.86246 0.91635 1.25041 0.97987 0.98431 0.97729 1.70071 1.06696 1.41107 1.36691 0.86388 0.78122 0.78958 0.83405 1.21632 1.20816 1.20995 1.21052 0.91738 0.96944 0.85017 1.22829 0.99412 0.99033 1.00290 1.21996 0.81817 0.94697 1.00243 1.86085 1.31274 1.74935 1.39071 0.87576 0.92548 0.92537 0.83700 0.83991 0.81724 0.75257 0.90103 0.90848 0.92604 0.93813 0.93540 0.95409 0.90865 0.92170 0.92392 0.92059 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.38 8.56 -40.58 -0.35 -3.72 16 3 C 0.14 1.62 6.71 -38.55 -0.26 1.36 16 4 C -0.18 -1.43 9.13 -39.15 -0.36 -1.79 16 5 C -0.11 -0.75 10.10 -39.36 -0.40 -1.15 16 6 C 0.06 0.51 11.17 -17.55 -0.20 0.31 16 7 N -0.42 -5.17 9.54 -9.71 -0.09 -5.26 16 8 C 0.05 0.68 6.76 -82.88 -0.56 0.12 16 9 C 0.57 9.37 7.80 -12.33 -0.10 9.28 16 10 O -0.52 -9.97 15.14 -16.63 -0.25 -10.22 16 11 N -0.70 -11.13 5.48 -61.24 -0.34 -11.47 16 12 C 0.13 2.20 5.34 -4.04 -0.02 2.18 16 13 C 0.07 1.25 2.68 -25.79 -0.07 1.18 16 14 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.70 5.12 -3.83 -0.02 2.68 16 16 N -0.59 -14.54 2.21 -171.80 -0.38 -14.92 16 17 C -0.27 -7.15 9.45 -15.06 -0.14 -7.29 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 19 C 0.01 0.20 4.85 -17.43 -0.08 0.11 16 20 N -0.90 -25.88 11.10 55.49 0.62 -25.27 16 21 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.18 4.21 4.75 -3.00 -0.01 4.20 16 26 C -0.18 -3.38 5.79 -26.98 -0.16 -3.54 16 27 C 0.09 1.62 6.38 36.42 0.23 1.85 16 28 O -0.39 -7.34 9.38 -26.54 -0.25 -7.59 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 31 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 32 H 0.15 0.72 6.46 -52.48 -0.34 0.38 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.41 6.24 7.78 -40.82 -0.32 5.92 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.17 7.98 -51.93 -0.41 0.76 16 39 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 42 H 0.07 1.91 6.43 -51.92 -0.33 1.58 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 45 H 0.06 1.24 7.41 -51.93 -0.38 0.85 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.34 374.94 -8.34 -41.68 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.77 Total: 4.02 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -1.15 Total: 10.62 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.19 Total: -56.92 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.85 Total: -21.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.34 -8.34 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds