Wall clock time and date at job start Tue Mar 31 2020 19:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35644 * 117.00227 * 2 1 4 4 C 1.39348 * 120.54146 * 0.26334 * 3 2 1 5 5 C 1.38301 * 118.44114 * 180.26704 * 4 3 2 6 6 C 1.38766 * 119.44577 * 359.72581 * 5 4 3 7 7 N 1.31380 * 121.06384 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69759 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.78316 * 180.02562 * 8 7 6 10 10 O 1.21557 * 119.99922 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99695 * 0.02562 * 9 8 7 12 12 C 1.46507 * 119.99731 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47202 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.46283 * 304.99132 * 13 12 11 15 15 C 1.54796 * 109.46909 * 185.00044 * 13 12 11 16 16 N 1.45126 * 109.52992 * 172.10535 * 15 13 12 17 17 C 1.36932 * 118.75419 * 269.29048 * 16 15 13 18 18 H 1.07999 * 119.99965 * 26.66452 * 17 16 15 19 19 C 1.38814 * 119.99858 * 206.66111 * 17 16 15 20 20 N 1.31622 * 119.99793 * 16.65807 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 196.65245 * 19 17 16 22 22 H 1.48496 * 109.47263 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47245 * 300.00294 * 21 19 17 24 24 H 1.48505 * 109.47012 * 60.00303 * 21 19 17 25 25 C 1.47499 * 122.48329 * 89.57046 * 16 15 13 26 26 C 1.53949 * 110.82317 * 317.97222 * 25 16 15 27 27 C 1.51537 * 109.72755 * 320.31040 * 26 25 16 28 28 O 1.38016 * 109.46599 * 64.98326 * 13 12 11 29 29 H 1.08993 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47404 * 300.00539 * 1 2 3 31 31 H 1.09004 * 109.47266 * 60.00413 * 1 2 3 32 32 H 1.08004 * 120.77826 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.27989 * 179.75466 * 5 4 3 34 34 H 1.08001 * 119.46957 * 179.97438 * 6 5 4 35 35 H 0.96992 * 120.00346 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.46771 * 59.99778 * 12 11 9 37 37 H 1.09004 * 109.46896 * 299.99937 * 12 11 9 38 38 H 1.09005 * 109.46492 * 52.08648 * 15 13 12 39 39 H 1.08999 * 109.46009 * 292.12417 * 15 13 12 40 40 H 0.97002 * 119.99641 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.17529 * 78.49713 * 25 16 15 42 42 H 1.09007 * 109.16444 * 197.69407 * 25 16 15 43 43 H 1.08996 * 109.46056 * 200.18150 * 26 25 16 44 44 H 1.09000 * 109.29615 * 80.33895 * 26 25 16 45 45 H 1.09003 * 109.58550 * 331.50860 * 27 26 25 46 46 H 1.09000 * 109.58890 * 211.07311 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 0.0055 5 6 1.9696 3.5928 -0.0004 6 6 3.3572 3.6011 -0.0057 7 7 4.0419 2.4798 -0.0058 8 6 3.4409 1.2949 -0.0003 9 6 4.2531 0.0597 0.0000 10 8 3.7073 -1.0265 0.0046 11 7 5.5986 0.1378 -0.0049 12 6 6.4034 -1.0863 -0.0040 13 6 7.8889 -0.7201 -0.0108 14 1 8.0973 -0.0636 -0.8557 15 6 8.7374 -2.0086 -0.1372 16 7 10.1314 -1.6545 -0.3313 17 6 10.6005 -1.5017 -1.6086 18 1 9.9251 -1.2158 -2.4014 19 6 11.9443 -1.7141 -1.8846 20 7 12.6974 -2.3670 -1.0249 21 14 12.6836 -1.0735 -3.4759 22 1 14.1244 -1.4288 -3.5306 23 1 11.9791 -1.6858 -4.6308 24 1 12.5350 0.4031 -3.5315 25 6 11.0633 -1.4588 0.7952 26 6 10.3888 -0.6710 1.9329 27 6 9.5253 0.4299 1.3508 28 8 8.2082 -0.0719 1.1651 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2174 2.3528 0.0095 33 1 1.4196 4.5222 -0.0003 34 1 3.8829 4.5446 -0.0108 35 1 6.0340 1.0045 -0.0089 36 1 6.1705 -1.6748 -0.8915 37 1 6.1767 -1.6696 0.8885 38 1 8.3886 -2.5911 -0.9900 39 1 8.6364 -2.6006 0.7724 40 1 13.6363 -2.5157 -1.2179 41 1 11.3823 -2.4317 1.1689 42 1 11.9360 -0.9070 0.4459 43 1 11.1535 -0.2320 2.5736 44 1 9.7678 -1.3472 2.5204 45 1 9.9344 0.7464 0.3913 46 1 9.5004 1.2763 2.0371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073865406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:35 Heat of formation + Delta-G solvation = -70.044200 kcal Electronic energy + Delta-G solvation = -29156.096406 eV Core-core repulsion = 25046.605328 eV Total energy + Delta-G solvation = -4109.491078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93617 -40.70017 -39.83592 -39.15025 -36.99002 -35.90745 -33.82378 -33.47975 -33.10832 -31.85740 -30.12211 -28.34752 -27.41908 -27.09103 -25.60559 -24.18091 -23.74740 -22.29243 -21.79181 -21.29445 -19.46189 -18.86291 -18.71508 -18.16654 -17.62141 -17.15173 -16.98255 -16.88004 -16.37006 -16.33679 -15.95880 -15.64139 -15.49789 -15.25138 -14.83660 -14.72657 -14.56363 -14.33905 -14.24121 -13.72890 -13.57651 -13.42865 -13.13505 -13.00481 -12.73821 -12.51290 -12.43790 -12.41739 -12.39649 -12.10144 -11.76869 -11.47817 -11.32629 -11.31315 -10.82439 -10.63459 -10.53927 -10.27297 -10.11469 -9.48438 -8.72877 -7.90007 -5.37232 -0.35195 0.23867 1.46063 1.47481 1.54616 1.76694 2.07912 2.22383 2.49642 2.75576 2.84676 3.21659 3.25799 3.55527 3.61162 3.77504 4.01658 4.04948 4.13825 4.20383 4.22061 4.30446 4.35112 4.36701 4.48620 4.53897 4.57629 4.66288 4.71766 4.74320 4.81645 4.89663 4.92828 5.02289 5.13345 5.17750 5.24085 5.41196 5.43882 5.45952 5.60713 5.73537 6.22533 6.35134 6.46518 6.74945 6.83420 7.13628 7.20795 7.85640 8.27457 9.15699 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.002501 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.156842 B =11192.321162 C =11246.778793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.123 3.877 4 C -0.171 4.171 5 C -0.086 4.086 6 C 0.052 3.948 7 N -0.443 5.443 8 C 0.003 3.997 9 C 0.563 3.437 10 O -0.560 6.560 11 N -0.699 5.699 12 C 0.142 3.858 13 C 0.088 3.912 14 H 0.042 0.958 15 C 0.125 3.875 16 N -0.605 5.605 17 C -0.273 4.273 18 H 0.066 0.934 19 C -0.044 4.044 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.294 1.294 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.185 3.815 26 C -0.163 4.163 27 C 0.091 3.909 28 O -0.393 6.393 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.251 0.749 41 H -0.004 1.004 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.996 15.331 4.293 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.110 4.110 7 N -0.155 5.155 8 C -0.133 4.133 9 C 0.349 3.651 10 O -0.439 6.439 11 N -0.350 5.350 12 C 0.018 3.982 13 C 0.027 3.973 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.327 5.327 17 C -0.403 4.403 18 H 0.083 0.917 19 C -0.240 4.240 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.220 1.220 23 H -0.203 1.203 24 H -0.202 1.202 25 C 0.061 3.939 26 C -0.202 4.202 27 C 0.015 3.985 28 O -0.312 6.312 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.198 0.802 33 H 0.207 0.793 34 H 0.212 0.788 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.014 0.986 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.313 14.228 4.433 28.517 hybrid contribution 0.402 0.023 -1.040 1.115 sum -23.911 14.252 3.393 28.042 Atomic orbital electron populations 1.23521 0.76135 1.05838 1.03010 1.86383 1.23598 1.25562 1.86462 1.20280 0.92021 0.86977 0.93517 1.22185 1.02633 0.90689 1.04207 1.22742 0.95157 0.99744 0.92944 1.23413 0.92791 0.96310 0.98508 1.67561 1.41078 0.97826 1.08987 1.20400 0.89348 0.92473 1.11099 1.18113 0.82355 0.88053 0.76587 1.90780 1.72385 1.29185 1.51519 1.45720 1.05335 1.10666 1.73291 1.21249 0.87576 0.86899 1.02480 1.22266 0.92490 0.95375 0.87213 0.93965 1.21540 0.84786 0.94514 0.99470 1.44033 1.05467 1.80445 1.02777 1.19461 0.93424 1.40128 0.87261 0.91659 1.25773 0.98409 0.98951 1.00852 1.70229 1.06565 1.42585 1.38498 0.85384 0.76887 0.78544 0.79888 1.21977 1.20294 1.20216 1.20848 0.91438 0.95593 0.86070 1.22680 0.99996 0.98907 0.98638 1.22078 0.81185 0.95245 0.99969 1.86111 1.31568 1.74696 1.38850 0.87143 0.90516 0.90552 0.80235 0.79313 0.78773 0.74840 0.90139 0.91326 0.93030 0.93742 0.94036 0.98613 0.93627 0.89538 0.92130 0.94170 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.66 8.56 -68.60 -0.59 -8.25 16 3 C 0.12 2.82 6.71 22.93 0.15 2.97 16 4 C -0.17 -2.14 9.13 22.55 0.21 -1.94 16 5 C -0.09 -0.78 10.10 22.41 0.23 -0.56 16 6 C 0.05 0.75 11.17 84.89 0.95 1.70 16 7 N -0.44 -10.48 9.54 -184.63 -1.76 -12.24 16 8 C 0.00 0.09 6.76 41.93 0.28 0.37 16 9 C 0.56 19.28 7.80 86.78 0.68 19.96 16 10 O -0.56 -22.39 15.14 17.09 0.26 -22.13 16 11 N -0.70 -22.73 5.48 -465.95 -2.55 -25.29 16 12 C 0.14 4.85 5.34 86.38 0.46 5.31 16 13 C 0.09 3.29 2.68 31.21 0.08 3.37 16 14 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.12 5.40 5.12 87.25 0.45 5.84 16 16 N -0.61 -30.55 2.21 -697.45 -1.54 -32.10 16 17 C -0.27 -14.98 9.45 84.03 0.79 -14.18 16 18 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 19 C -0.04 -2.46 4.85 84.86 0.41 -2.05 16 20 N -0.93 -55.24 11.10 21.65 0.24 -55.00 16 21 Si 0.97 44.92 29.59 68.60 2.03 46.95 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.19 9.06 4.75 86.51 0.41 9.47 16 26 C -0.16 -6.14 5.79 30.44 0.18 -5.96 16 27 C 0.09 3.20 6.38 71.50 0.46 3.66 16 28 O -0.39 -14.34 9.38 -117.87 -1.11 -15.45 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 0.57 7.69 -2.39 -0.02 0.55 16 31 H 0.08 0.58 7.71 -2.38 -0.02 0.56 16 32 H 0.18 0.89 6.46 -2.91 -0.02 0.87 16 33 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 34 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.41 12.74 7.78 -92.71 -0.72 12.02 16 36 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 37 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.05 2.24 7.98 -2.38 -0.02 2.22 16 39 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.00 -0.23 8.03 -2.39 -0.02 -0.25 16 42 H 0.05 2.46 6.43 -2.38 -0.02 2.44 16 43 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 45 H 0.04 1.60 7.41 -2.39 -0.02 1.58 16 46 H 0.11 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -76.72 374.94 2.10 -74.62 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.28 Total: 19.69 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 6.85 Total: 29.19 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -5.62 Total: -124.63 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.43 Total: -45.82 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.72 2.10 -74.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.574 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds