Wall clock time and date at job start Tue Mar 31 2020 18:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35668 * 116.99907 * 2 1 4 4 C 1.38923 * 119.68539 * 179.72425 * 3 2 1 5 5 C 1.38377 * 119.11416 * 179.71347 * 4 3 2 6 6 C 1.50702 * 120.76212 * 180.28743 * 5 4 3 7 7 C 1.50704 * 109.46811 * 270.27220 * 6 5 4 8 8 O 1.21286 * 119.99905 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99811 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99783 * 180.02562 * 9 7 6 11 11 H 1.08995 * 110.88533 * 31.11363 * 10 9 7 12 12 C 1.54915 * 110.99956 * 267.19540 * 10 9 7 13 13 N 1.47425 * 104.82966 * 204.91617 * 12 10 9 14 14 C 1.36941 * 125.65050 * 204.10740 * 13 12 10 15 15 H 1.08000 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00098 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99911 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47130 * 60.00332 * 18 16 14 20 20 H 1.48498 * 109.47064 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47147 * 300.00167 * 18 16 14 22 22 C 1.47030 * 108.70253 * 24.12811 * 13 12 10 23 23 C 1.54321 * 107.27202 * 358.94014 * 22 13 12 24 24 H 1.08998 * 110.87063 * 96.24039 * 23 22 13 25 25 O 1.42900 * 110.72285 * 219.44464 * 23 22 13 26 26 C 1.42897 * 113.99808 * 263.52500 * 25 23 22 27 27 C 1.38830 * 118.48305 * 0.54706 * 5 4 3 28 28 C 1.38041 * 119.29171 * 359.73647 * 27 5 4 29 29 N 1.31966 * 120.83254 * 359.97431 * 28 27 5 30 30 H 1.09002 * 109.47382 * 300.00092 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00199 * 1 2 3 33 33 H 1.08002 * 120.44227 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.46868 * 30.26624 * 6 5 4 35 35 H 1.08995 * 109.47379 * 150.26860 * 6 5 4 36 36 H 0.96997 * 120.00010 * 359.97438 * 9 7 6 37 37 H 1.09000 * 110.36549 * 323.74970 * 12 10 9 38 38 H 1.09001 * 110.36694 * 86.08186 * 12 10 9 39 39 H 0.96999 * 120.00113 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.88034 * 239.52246 * 22 13 12 41 41 H 1.08997 * 109.88086 * 118.35657 * 22 13 12 42 42 H 1.09000 * 109.47546 * 59.99689 * 26 25 23 43 43 H 1.09003 * 109.46964 * 179.97438 * 26 25 23 44 44 H 1.09002 * 109.47055 * 299.99647 * 26 25 23 45 45 H 1.07999 * 120.35501 * 179.75559 * 27 5 4 46 46 H 1.07998 * 119.58480 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2739 0.0058 5 6 4.0485 2.5131 -0.0003 6 6 5.5512 2.6269 -0.0008 7 6 6.0525 2.6652 1.4199 8 8 5.2668 2.6063 2.3420 9 7 7.3739 2.7648 1.6657 10 6 7.8613 2.8014 3.0469 11 1 7.2106 2.2246 3.7040 12 6 8.0038 4.2608 3.5467 13 7 9.0194 4.1967 4.6135 14 6 9.1536 5.0903 5.6425 15 1 8.4795 5.9306 5.7191 16 6 10.1558 4.9160 6.5869 17 7 10.9776 3.8921 6.4931 18 14 10.3393 6.1353 7.9900 19 1 9.0901 6.1579 8.7927 20 1 11.4762 5.7281 8.8542 21 1 10.5977 7.4896 7.4384 22 6 9.8647 3.0147 4.3894 23 6 9.3264 2.2980 3.1331 24 1 9.8883 2.5930 2.2470 25 8 9.3644 0.8799 3.3048 26 6 10.5212 0.2572 2.7426 27 6 3.2505 3.6491 -0.0004 28 6 1.8771 3.5097 0.0000 29 7 1.3187 2.3140 0.0000 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 4.0229 0.3695 0.0099 34 1 5.9806 1.7668 -0.5145 35 1 5.8462 3.5416 -0.5150 36 1 8.0023 2.8115 0.9283 37 1 8.3438 4.9074 2.7378 38 1 7.0554 4.6190 3.9470 39 1 11.6782 3.7705 7.1528 40 1 9.8060 2.3485 5.2500 41 1 10.8973 3.3231 4.2263 42 1 11.4169 0.6623 3.2133 43 1 10.4750 -0.8181 2.9151 44 1 10.5541 0.4524 1.6707 45 1 3.6993 4.6314 -0.0011 46 1 1.2518 4.3902 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082137311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:17 Heat of formation + Delta-G solvation = -45.813255 kcal Electronic energy + Delta-G solvation = -28665.061906 eV Core-core repulsion = 24556.621560 eV Total energy + Delta-G solvation = -4108.440346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86767 -39.72622 -38.35978 -37.83792 -35.93349 -34.09000 -33.90060 -31.80899 -30.89988 -29.36793 -28.51214 -27.39055 -26.78349 -26.12740 -24.25534 -23.60473 -22.40074 -20.73319 -20.53145 -19.98231 -18.10632 -17.42598 -17.27345 -16.85116 -16.36976 -16.12981 -16.05730 -15.57836 -15.17409 -14.90431 -14.47557 -14.43920 -14.29926 -14.20936 -13.80845 -13.42185 -13.25478 -13.05841 -12.76203 -12.58061 -12.27702 -12.11337 -11.90373 -11.77263 -11.54322 -11.38047 -11.25078 -11.02850 -10.80671 -10.76317 -10.21187 -10.10198 -9.98199 -9.83394 -9.80514 -9.60844 -9.15364 -8.77661 -8.64515 -8.58820 -6.90707 -5.74531 -3.09806 1.00819 1.10148 2.72402 2.90004 3.23080 3.40608 3.44711 3.45934 3.69601 4.11805 4.14358 4.35222 4.49781 4.70898 4.86158 4.93313 4.96839 5.06629 5.10585 5.13486 5.21682 5.24291 5.36465 5.42242 5.46828 5.55004 5.57904 5.62614 5.68963 5.72962 5.82912 5.90180 6.02750 6.12688 6.14161 6.24541 6.48886 6.59768 6.82489 7.07233 7.23702 7.45883 7.62238 7.69586 7.69888 7.84922 8.18843 8.34875 9.16082 9.76216 10.39098 11.36797 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.002471 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.543039 B =11331.012682 C =12301.559632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.319 3.681 4 C -0.175 4.175 5 C 0.015 3.985 6 C -0.105 4.105 7 C 0.515 3.485 8 O -0.528 6.528 9 N -0.715 5.715 10 C 0.132 3.868 11 H 0.107 0.893 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.165 3.835 23 C 0.055 3.945 24 H 0.063 0.937 25 O -0.378 6.378 26 C 0.034 3.966 27 C -0.194 4.194 28 C 0.138 3.862 29 N -0.543 5.543 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.023 0.977 38 H 0.049 0.951 39 H 0.254 0.746 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.137 0.863 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -5.642 -19.228 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.140 3.860 4 C -0.195 4.195 5 C 0.007 3.993 6 C -0.145 4.145 7 C 0.300 3.700 8 O -0.403 6.403 9 N -0.366 5.366 10 C 0.026 3.974 11 H 0.125 0.875 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.040 3.960 23 C -0.004 4.004 24 H 0.081 0.919 25 O -0.296 6.296 26 C -0.062 4.062 27 C -0.214 4.214 28 C -0.017 4.017 29 N -0.267 5.267 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.230 0.770 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.155 0.845 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.992 -6.127 -18.253 23.227 hybrid contribution 1.448 0.918 0.287 1.738 sum -11.544 -5.209 -17.966 21.981 Atomic orbital electron populations 1.22835 0.77344 1.02807 1.02397 1.86232 1.22832 1.24652 1.87959 1.19724 0.89201 0.84667 0.92375 1.20852 0.92059 0.98940 1.07679 1.19444 0.94537 0.92364 0.92967 1.20722 0.91922 1.05879 0.96012 1.20250 0.82543 0.76627 0.90570 1.90771 1.55019 1.48535 1.46012 1.45917 1.06985 1.74734 1.08982 1.22420 0.94623 0.98449 0.81861 0.87543 1.21818 0.93770 0.92337 0.91712 1.44253 1.32989 1.28062 1.27513 1.19023 1.12449 1.03238 1.01048 0.90207 1.24821 0.98013 0.98353 0.99126 1.69925 1.20354 1.29823 1.36886 0.86153 0.77287 0.80219 0.81829 1.21031 1.21567 1.21125 1.21558 0.93855 0.88214 0.92405 1.23858 0.95257 0.81157 1.00094 0.91914 1.87918 1.42362 1.19782 1.79527 1.22708 0.89036 0.98087 0.96409 1.21842 0.94786 0.99324 1.05471 1.22315 0.92691 0.93566 0.93099 1.67272 1.41029 0.98880 1.19526 0.92295 0.88740 0.92419 0.84277 0.87359 0.87140 0.76974 0.95953 0.93244 0.93583 0.91955 0.93353 0.93655 0.90247 0.94854 0.84503 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.75 10.48 -18.71 -0.20 -3.95 16 3 C 0.32 4.12 7.49 -17.12 -0.13 3.99 16 4 C -0.17 -2.11 9.75 -39.28 -0.38 -2.49 16 5 C 0.01 0.17 4.41 -104.35 -0.46 -0.29 16 6 C -0.11 -0.95 5.88 -29.03 -0.17 -1.12 16 7 C 0.52 7.15 7.82 -10.98 -0.09 7.06 16 8 O -0.53 -9.94 15.67 5.55 0.09 -9.85 16 9 N -0.72 -9.67 5.20 -51.72 -0.27 -9.94 16 10 C 0.13 2.41 3.15 -65.78 -0.21 2.21 16 11 H 0.11 2.29 7.54 -51.93 -0.39 1.89 16 12 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 13 N -0.60 -15.35 3.40 -170.07 -0.58 -15.93 16 14 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 18 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.17 3.97 5.15 -3.06 -0.02 3.96 16 23 C 0.06 1.02 3.09 -24.90 -0.08 0.95 16 24 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 25 O -0.38 -6.85 10.43 -35.23 -0.37 -7.22 16 26 C 0.03 0.47 10.85 101.05 1.10 1.57 16 27 C -0.19 -2.03 9.81 -39.43 -0.39 -2.41 16 28 C 0.14 1.47 11.18 -17.57 -0.20 1.27 16 29 N -0.54 -6.78 9.22 -13.33 -0.12 -6.90 16 30 H 0.06 0.54 8.10 -51.93 -0.42 0.11 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.11 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.40 3.95 8.57 -40.82 -0.35 3.60 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.06 1.72 7.29 -51.93 -0.38 1.34 16 41 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.38 8.11 -51.93 -0.42 -0.05 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 387.35 15.07 5.84 5.84 Total: -1.00 -35.69 387.35 -7.23 -42.92 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.94 Total: 2.32 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -0.23 Total: 11.96 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.40 Total: -59.13 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.48 Total: -21.02 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.69 -7.23 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082137311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.892 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds