Wall clock time and date at job start Tue Mar 31 2020 19:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36013 * 117.00286 * 2 1 4 4 C 1.35844 * 120.31120 * 359.97438 * 3 2 1 5 5 N 1.35448 * 120.77357 * 179.97438 * 4 3 2 6 6 H 0.96998 * 119.29273 * 179.97438 * 5 4 3 7 7 C 1.36430 * 121.41262 * 0.03214 * 5 4 3 8 8 C 1.48073 * 119.71903 * 179.97438 * 7 5 4 9 9 O 1.21507 * 119.99798 * 179.97438 * 8 7 5 10 10 N 1.34781 * 119.99789 * 359.97438 * 8 7 5 11 11 C 1.46498 * 119.99516 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47164 * 35.00313 * 11 10 8 13 13 C 1.52997 * 109.47385 * 275.00025 * 11 10 8 14 14 C 1.53007 * 109.47323 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46768 * 59.99870 * 14 13 11 16 16 C 1.53004 * 109.47139 * 299.99685 * 15 14 13 17 17 C 1.52998 * 109.46673 * 60.00704 * 16 15 14 18 18 H 1.08999 * 109.47466 * 59.99920 * 17 16 15 19 19 N 1.46508 * 109.46840 * 179.97438 * 17 16 15 20 20 C 1.36934 * 120.00141 * 274.99984 * 19 17 16 21 21 H 1.08006 * 119.99850 * 359.97438 * 20 19 17 22 22 C 1.38803 * 120.00009 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00346 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00204 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47266 * 89.99416 * 24 22 20 26 26 H 1.48502 * 109.47228 * 209.99988 * 24 22 20 27 27 H 1.48498 * 109.46802 * 329.99818 * 24 22 20 28 28 C 1.36178 * 120.55927 * 359.96889 * 7 5 4 29 29 C 1.41585 * 120.31219 * 180.28467 * 3 2 1 30 30 O 1.22256 * 120.65534 * 359.97438 * 29 3 2 31 31 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46720 * 299.99925 * 1 2 3 33 33 H 1.08995 * 109.47211 * 59.99755 * 1 2 3 34 34 H 1.07994 * 119.61334 * 0.02813 * 4 3 2 35 35 H 0.96993 * 120.00100 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46784 * 300.00122 * 13 11 10 37 37 H 1.08997 * 109.47309 * 59.99901 * 13 11 10 38 38 H 1.08997 * 109.46385 * 300.00283 * 14 13 11 39 39 H 1.08991 * 109.46823 * 179.97438 * 14 13 11 40 40 H 1.09005 * 109.46572 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47452 * 60.00041 * 15 14 13 42 42 H 1.08991 * 109.47527 * 300.00451 * 16 15 14 43 43 H 1.08998 * 109.46720 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99599 * 94.99748 * 19 17 16 45 45 H 0.97002 * 120.00687 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.40093 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3552 -0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3734 4.3695 -0.0008 7 6 3.2775 3.6828 0.0004 8 6 3.8997 5.0265 0.0004 9 8 5.1098 5.1355 0.0012 10 7 3.1236 6.1284 -0.0006 11 6 3.7392 7.4578 0.0000 12 1 4.6565 7.4337 -0.5885 13 6 4.0661 7.8679 1.4373 14 6 4.7085 9.2566 1.4379 15 6 3.7367 10.2682 0.8273 16 6 3.4099 9.8581 -0.6101 17 6 2.7675 8.4696 -0.6106 18 1 1.8503 8.4933 -0.0221 19 7 2.4540 8.0771 -1.9869 20 6 1.2775 8.4775 -2.5620 21 1 0.5805 9.0823 -2.0008 22 6 0.9803 8.1052 -3.8657 23 7 1.8295 7.3677 -4.5494 24 14 -0.6249 8.6508 -4.6501 25 1 -0.4247 9.9549 -5.3315 26 1 -1.0612 7.6356 -5.6422 27 1 -1.6648 8.7956 -3.5999 28 6 4.0669 2.5732 0.0009 29 6 3.4600 1.2936 -0.0061 30 8 4.1430 0.2796 -0.0109 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 0.2345 2.2973 -0.0005 35 1 2.1576 6.0413 -0.0016 36 1 3.1489 7.8920 2.0257 37 1 4.7581 7.1469 1.8724 38 1 5.6256 9.2328 0.8493 39 1 4.9409 9.5488 2.4618 40 1 4.1945 11.2575 0.8273 41 1 2.8195 10.2919 1.4158 42 1 4.3269 9.8344 -1.1986 43 1 2.7171 10.5787 -1.0449 44 1 3.0798 7.5336 -2.4907 45 1 1.6220 7.1078 -5.4606 46 1 5.1428 2.6679 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085273892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:16 Heat of formation + Delta-G solvation = -66.581767 kcal Electronic energy + Delta-G solvation = -29448.178145 eV Core-core repulsion = 25338.837209 eV Total energy + Delta-G solvation = -4109.340936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47292 -39.96030 -38.50072 -37.81522 -37.56365 -34.27886 -34.12235 -31.63901 -31.33253 -30.94686 -29.41519 -27.99597 -27.64519 -24.67989 -23.87358 -23.25629 -22.25335 -21.28701 -20.59069 -20.12605 -19.43543 -18.09239 -17.80661 -17.17737 -16.28863 -16.20396 -16.07211 -15.57440 -15.24518 -15.00011 -14.57396 -14.45890 -14.30896 -14.12187 -13.86009 -13.73227 -13.63419 -13.14457 -13.11314 -12.83231 -12.82088 -12.34812 -12.26120 -11.72447 -11.57359 -11.24272 -11.06591 -11.03241 -10.90839 -10.75940 -10.49514 -10.31255 -10.22671 -9.89098 -9.83029 -9.53587 -9.49732 -9.09438 -8.95537 -7.74747 -7.16752 -5.93868 -3.25226 0.64841 1.10348 2.49250 2.81089 2.91367 3.12470 3.29114 3.34581 3.37607 3.68786 4.26103 4.39873 4.46100 4.55794 4.81469 4.89097 4.91678 4.96004 4.98028 5.12012 5.25893 5.33255 5.36174 5.42680 5.54866 5.62198 5.69351 5.71892 5.77684 5.81974 5.97266 6.07448 6.11648 6.24194 6.29086 6.32307 6.41885 6.45262 6.58584 6.60110 6.72027 6.89313 7.06420 7.41453 7.51879 7.98869 8.01839 8.22614 9.34696 9.89369 10.24447 11.27464 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003917 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.169094 B = 7147.212139 C = 9447.528954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.289 6.289 3 C -0.037 4.037 4 C 0.034 3.966 5 N -0.559 5.559 6 H 0.422 0.578 7 C 0.132 3.868 8 C 0.558 3.442 9 O -0.510 6.510 10 N -0.699 5.699 11 C 0.140 3.860 12 H 0.091 0.909 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.173 3.827 18 H 0.052 0.948 19 N -0.723 5.723 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.927 5.927 24 Si 0.904 3.096 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.217 4.217 29 C 0.402 3.598 30 O -0.502 6.502 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.170 0.830 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.385 0.615 45 H 0.257 0.743 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -3.373 13.772 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.201 6.201 3 C -0.088 4.088 4 C -0.094 4.094 5 N -0.172 5.172 6 H 0.260 0.740 7 C 0.019 3.981 8 C 0.341 3.659 9 O -0.384 6.384 10 N -0.349 5.349 11 C 0.035 3.965 12 H 0.109 0.891 13 C -0.164 4.164 14 C -0.152 4.152 15 C -0.159 4.159 16 C -0.174 4.174 17 C 0.062 3.938 18 H 0.069 0.931 19 N -0.364 5.364 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.574 5.574 24 Si 0.735 3.265 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.244 4.244 29 C 0.292 3.708 30 O -0.387 6.387 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.187 0.813 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.067 0.933 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.362 -4.013 13.690 14.460 hybrid contribution -1.935 0.751 -0.899 2.263 sum -4.297 -3.261 12.791 13.882 Atomic orbital electron populations 1.23129 0.79236 1.04396 1.01024 1.86265 1.20271 1.24352 1.89177 1.20412 0.94818 0.84626 1.08977 1.21654 0.98826 0.84158 1.04740 1.40749 1.05214 1.08637 1.62592 0.73991 1.20461 0.82811 0.95901 0.98909 1.17857 0.87147 0.82972 0.77904 1.90830 1.12884 1.85751 1.48957 1.45872 1.09887 1.05978 1.73125 1.21478 0.98111 0.80482 0.96429 0.89103 1.21884 1.00915 0.97298 0.96292 1.21472 0.98933 0.94249 1.00553 1.21594 0.98863 0.98084 0.97310 1.22221 1.01304 0.99118 0.94787 1.20479 0.94521 0.90862 0.87911 0.93052 1.42448 1.22148 1.62474 1.09352 1.19175 0.95566 1.27163 0.95912 0.91147 1.24748 0.98364 1.00362 0.96959 1.69661 1.36025 1.40735 1.10962 0.86255 0.83145 0.77932 0.79151 1.21611 1.21807 1.20805 1.22439 1.02264 0.90373 1.09303 1.16776 0.86076 0.89793 0.78168 1.90839 1.65741 1.37560 1.44527 0.88004 0.92814 0.92597 0.81335 0.76729 0.91884 0.91654 0.91785 0.92169 0.92530 0.92350 0.92299 0.91446 0.78098 0.93325 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.81 10.33 -35.60 -0.37 -4.18 16 3 C -0.04 -0.50 6.71 -39.16 -0.26 -0.76 16 4 C 0.03 0.33 10.22 -16.81 -0.17 0.16 16 5 N -0.56 -5.54 5.26 -9.58 -0.05 -5.59 16 6 H 0.42 3.19 7.00 -40.82 -0.29 2.90 16 7 C 0.13 1.72 6.77 -82.53 -0.56 1.16 16 8 C 0.56 8.10 7.77 -12.22 -0.09 8.01 16 9 O -0.51 -8.95 15.93 5.36 0.09 -8.87 16 10 N -0.70 -9.22 4.90 -54.68 -0.27 -9.48 16 11 C 0.14 2.00 1.98 -67.93 -0.13 1.87 16 12 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 13 C -0.12 -1.48 5.49 -26.73 -0.15 -1.63 16 14 C -0.11 -1.28 5.92 -26.73 -0.16 -1.43 16 15 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 16 C -0.13 -2.05 5.50 -26.73 -0.15 -2.20 16 17 C 0.17 2.81 2.29 -67.93 -0.16 2.66 16 18 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 19 N -0.72 -15.49 4.95 -53.42 -0.26 -15.76 16 20 C -0.25 -6.00 9.93 -15.06 -0.15 -6.15 16 21 H 0.07 1.66 7.83 -52.48 -0.41 1.25 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -25.98 13.06 55.49 0.72 -25.25 16 24 Si 0.90 20.58 29.55 -169.99 -5.02 15.55 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 C -0.22 -3.22 9.53 -39.03 -0.37 -3.60 16 29 C 0.40 6.60 6.78 -37.01 -0.25 6.35 16 30 O -0.50 -10.11 17.71 -11.14 -0.20 -10.30 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.30 7.66 -51.92 -0.40 -0.10 16 33 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 34 H 0.17 0.99 6.21 -52.49 -0.33 0.67 16 35 H 0.40 4.51 6.81 -40.82 -0.28 4.24 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.17 2.55 7.58 -52.49 -0.40 2.16 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.57 378.93 -8.08 -41.65 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.56 Total: 12.84 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.87 Total: 3.68 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.14 Total: -56.09 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.48 Total: -23.35 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.57 -8.08 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085273892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.927 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds