Wall clock time and date at job start Tue Mar 31 2020 19:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36013 * 117.00286 * 2 1 4 4 C 1.35844 * 120.31120 * 359.97438 * 3 2 1 5 5 N 1.35448 * 120.77357 * 179.97438 * 4 3 2 6 6 H 0.96998 * 119.29273 * 179.97438 * 5 4 3 7 7 C 1.36430 * 121.41262 * 0.03214 * 5 4 3 8 8 C 1.48073 * 119.71903 * 179.97438 * 7 5 4 9 9 O 1.21507 * 119.99798 * 179.97438 * 8 7 5 10 10 N 1.34781 * 119.99789 * 359.97438 * 8 7 5 11 11 C 1.46498 * 119.99516 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47164 * 35.00313 * 11 10 8 13 13 C 1.52997 * 109.47385 * 275.00025 * 11 10 8 14 14 C 1.53007 * 109.47323 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46768 * 59.99870 * 14 13 11 16 16 C 1.53004 * 109.47139 * 299.99685 * 15 14 13 17 17 C 1.52998 * 109.46673 * 60.00704 * 16 15 14 18 18 H 1.08999 * 109.47466 * 59.99920 * 17 16 15 19 19 N 1.46508 * 109.46840 * 179.97438 * 17 16 15 20 20 C 1.36934 * 120.00141 * 274.99984 * 19 17 16 21 21 H 1.08006 * 119.99850 * 359.97438 * 20 19 17 22 22 C 1.38803 * 120.00009 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00346 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00204 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47266 * 89.99416 * 24 22 20 26 26 H 1.48502 * 109.47228 * 209.99988 * 24 22 20 27 27 H 1.48498 * 109.46802 * 329.99818 * 24 22 20 28 28 C 1.36178 * 120.55927 * 359.96889 * 7 5 4 29 29 C 1.41585 * 120.31219 * 180.28467 * 3 2 1 30 30 O 1.22256 * 120.65534 * 359.97438 * 29 3 2 31 31 H 1.08996 * 109.47516 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46720 * 299.99925 * 1 2 3 33 33 H 1.08995 * 109.47211 * 59.99755 * 1 2 3 34 34 H 1.07994 * 119.61334 * 0.02813 * 4 3 2 35 35 H 0.96993 * 120.00100 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46784 * 300.00122 * 13 11 10 37 37 H 1.08997 * 109.47309 * 59.99901 * 13 11 10 38 38 H 1.08997 * 109.46385 * 300.00283 * 14 13 11 39 39 H 1.08991 * 109.46823 * 179.97438 * 14 13 11 40 40 H 1.09005 * 109.46572 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47452 * 60.00041 * 15 14 13 42 42 H 1.08991 * 109.47527 * 300.00451 * 16 15 14 43 43 H 1.08998 * 109.46720 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99599 * 94.99748 * 19 17 16 45 45 H 0.97002 * 120.00687 * 180.02562 * 23 22 20 46 46 H 1.08002 * 120.40093 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3552 -0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3734 4.3695 -0.0008 7 6 3.2775 3.6828 0.0004 8 6 3.8997 5.0265 0.0004 9 8 5.1098 5.1355 0.0012 10 7 3.1236 6.1284 -0.0006 11 6 3.7392 7.4578 0.0000 12 1 4.6565 7.4337 -0.5885 13 6 4.0661 7.8679 1.4373 14 6 4.7085 9.2566 1.4379 15 6 3.7367 10.2682 0.8273 16 6 3.4099 9.8581 -0.6101 17 6 2.7675 8.4696 -0.6106 18 1 1.8503 8.4933 -0.0221 19 7 2.4540 8.0771 -1.9869 20 6 1.2775 8.4775 -2.5620 21 1 0.5805 9.0823 -2.0008 22 6 0.9803 8.1052 -3.8657 23 7 1.8295 7.3677 -4.5494 24 14 -0.6249 8.6508 -4.6501 25 1 -0.4247 9.9549 -5.3315 26 1 -1.0612 7.6356 -5.6422 27 1 -1.6648 8.7956 -3.5999 28 6 4.0669 2.5732 0.0009 29 6 3.4600 1.2936 -0.0061 30 8 4.1430 0.2796 -0.0109 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 0.2345 2.2973 -0.0005 35 1 2.1576 6.0413 -0.0016 36 1 3.1489 7.8920 2.0257 37 1 4.7581 7.1469 1.8724 38 1 5.6256 9.2328 0.8493 39 1 4.9409 9.5488 2.4618 40 1 4.1945 11.2575 0.8273 41 1 2.8195 10.2919 1.4158 42 1 4.3269 9.8344 -1.1986 43 1 2.7171 10.5787 -1.0449 44 1 3.0798 7.5336 -2.4907 45 1 1.6220 7.1078 -5.4606 46 1 5.1428 2.6679 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085273892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:15 Heat of formation + Delta-G solvation = -90.717517 kcal Electronic energy + Delta-G solvation = -29449.224750 eV Core-core repulsion = 25338.837209 eV Total energy + Delta-G solvation = -4110.387541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55647 -41.11473 -39.56687 -38.91696 -38.75058 -35.80870 -35.41536 -32.99552 -32.76170 -32.02008 -30.53406 -29.35127 -28.39509 -25.90376 -25.49986 -24.25698 -23.38745 -22.55467 -21.79051 -21.17243 -20.51700 -19.29892 -19.06566 -18.60395 -17.37016 -17.28662 -17.15106 -16.88108 -16.37560 -16.30957 -15.74139 -15.56969 -15.46401 -15.31189 -15.17537 -14.85298 -14.73391 -14.60071 -14.26084 -14.08642 -13.83807 -13.62528 -13.53458 -12.91801 -12.80210 -12.41115 -12.28435 -12.23992 -12.16669 -12.03264 -12.00809 -11.72203 -11.47936 -11.42098 -11.08110 -10.88730 -10.71814 -10.55686 -10.13885 -8.99026 -8.80099 -7.90003 -5.19081 -0.51931 0.11122 1.46793 1.49752 1.52742 1.59375 1.63638 1.77655 2.29777 2.55263 2.58134 3.31699 3.44828 3.51435 3.62845 3.68941 3.80336 3.84747 4.12536 4.27028 4.31619 4.33464 4.41864 4.44707 4.45788 4.48742 4.59593 4.61868 4.71030 4.80345 4.93288 4.99716 5.02504 5.10135 5.25372 5.29918 5.32718 5.37867 5.43832 5.52962 5.58061 5.66864 5.73643 6.22856 6.28542 6.30346 6.85882 6.88421 7.37212 8.10567 8.33896 9.32449 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003917 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.169094 B = 7147.212139 C = 9447.528954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.321 6.321 3 C -0.060 4.060 4 C 0.072 3.928 5 N -0.534 5.534 6 H 0.440 0.560 7 C 0.146 3.854 8 C 0.560 3.440 9 O -0.544 6.544 10 N -0.687 5.687 11 C 0.146 3.854 12 H 0.061 0.939 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.130 4.130 17 C 0.173 3.827 18 H 0.069 0.931 19 N -0.732 5.732 20 C -0.227 4.227 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.969 5.969 24 Si 0.962 3.038 25 H -0.298 1.298 26 H -0.304 1.304 27 H -0.262 1.262 28 C -0.234 4.234 29 C 0.381 3.619 30 O -0.567 6.567 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.369 0.631 45 H 0.246 0.754 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -1.496 16.028 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.235 6.235 3 C -0.111 4.111 4 C -0.057 4.057 5 N -0.146 5.146 6 H 0.281 0.719 7 C 0.031 3.969 8 C 0.344 3.656 9 O -0.420 6.420 10 N -0.337 5.337 11 C 0.041 3.959 12 H 0.079 0.921 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.171 4.171 17 C 0.064 3.936 18 H 0.087 0.913 19 N -0.372 5.372 20 C -0.359 4.359 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.619 5.619 24 Si 0.793 3.207 25 H -0.226 1.226 26 H -0.232 1.232 27 H -0.186 1.186 28 C -0.261 4.261 29 C 0.277 3.723 30 O -0.458 6.458 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.200 0.800 45 H 0.055 0.945 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.719 -2.048 16.013 17.127 hybrid contribution -0.984 0.316 -1.544 1.858 sum -6.703 -1.732 14.469 16.040 Atomic orbital electron populations 1.23512 0.76321 1.06107 1.02945 1.86225 1.23324 1.24399 1.89508 1.20152 0.93699 0.86234 1.10990 1.22278 1.00646 0.82385 1.00417 1.40888 1.04185 1.09884 1.59683 0.71911 1.20113 0.83975 0.94444 0.98346 1.17963 0.86766 0.83530 0.77382 1.90822 1.14509 1.86213 1.50497 1.45761 1.10400 1.05329 1.72260 1.21347 0.96330 0.80374 0.97819 0.92110 1.21836 1.01976 0.97563 0.94164 1.21482 0.98170 0.93517 1.01847 1.21525 0.99921 0.98785 0.94629 1.22111 0.99835 0.97911 0.97233 1.20693 0.95710 0.91696 0.85484 0.91275 1.42632 1.21106 1.62215 1.11198 1.19565 0.95913 1.24845 0.95584 0.89905 1.25409 1.01154 1.01666 0.97990 1.69824 1.38018 1.43332 1.10776 0.85308 0.80666 0.76406 0.78330 1.22641 1.23171 1.18613 1.22262 1.02020 0.90841 1.10998 1.17225 0.87872 0.89383 0.77861 1.90792 1.67159 1.39025 1.48819 0.86803 0.90177 0.91022 0.76066 0.75317 0.89499 0.92079 0.92933 0.89546 0.91278 0.90614 0.94238 0.93081 0.79983 0.94463 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -8.25 10.33 -78.57 -0.81 -9.06 16 3 C -0.06 -1.58 6.71 22.54 0.15 -1.43 16 4 C 0.07 1.14 10.22 83.58 0.85 1.99 16 5 N -0.53 -8.94 5.26 -184.21 -0.97 -9.91 16 6 H 0.44 4.67 7.00 -92.71 -0.65 4.02 16 7 C 0.15 3.70 6.77 40.56 0.27 3.98 16 8 C 0.56 15.96 7.77 86.85 0.67 16.63 16 9 O -0.54 -19.57 15.93 -3.74 -0.06 -19.63 16 10 N -0.69 -16.86 4.90 -445.21 -2.18 -19.04 16 11 C 0.15 3.97 1.98 44.99 0.09 4.06 16 12 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 13 C -0.12 -2.43 5.49 30.60 0.17 -2.26 16 14 C -0.11 -2.16 5.92 30.60 0.18 -1.98 16 15 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 16 C -0.13 -3.78 5.50 30.59 0.17 -3.62 16 17 C 0.17 5.26 2.29 44.99 0.10 5.37 16 18 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 19 N -0.73 -30.66 4.95 -322.93 -1.60 -32.25 16 20 C -0.23 -10.65 9.93 84.03 0.83 -9.81 16 21 H 0.08 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 23 N -0.97 -54.97 13.06 21.65 0.28 -54.69 16 24 Si 0.96 41.70 29.55 68.60 2.03 43.72 16 25 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 28 C -0.23 -7.33 9.53 22.63 0.22 -7.11 16 29 C 0.38 13.21 6.78 23.93 0.16 13.37 16 30 O -0.57 -24.86 17.71 8.97 0.16 -24.70 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.53 7.66 -2.38 -0.02 0.51 16 33 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 34 H 0.22 1.23 6.21 -2.91 -0.02 1.21 16 35 H 0.41 7.96 6.81 -92.71 -0.63 7.33 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.37 17.88 7.80 -92.71 -0.72 17.15 16 45 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.15 5.12 7.58 -2.91 -0.02 5.10 16 Total: -1.00 -78.66 378.93 1.52 -77.14 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.97 Total: 33.22 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 5.64 Total: 15.20 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.47 Total: -115.89 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.71 Total: -53.40 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -78.66 1.52 -77.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085273892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.574 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds