Wall clock time and date at job start Tue Mar 31 2020 18:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35686 * 117.00078 * 2 1 4 4 C 1.38741 * 119.57988 * 180.02562 * 3 2 1 5 5 C 1.39721 * 119.07545 * 180.02562 * 4 3 2 6 6 C 1.48173 * 120.86267 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00385 * 153.26041 * 6 5 4 8 8 N 1.34779 * 119.99719 * 333.26313 * 6 5 4 9 9 C 1.46499 * 120.00231 * 6.38585 * 8 6 5 10 10 C 1.46509 * 119.99650 * 186.38803 * 8 6 5 11 11 C 1.52995 * 109.46633 * 97.87037 * 10 8 6 12 12 H 1.09001 * 112.97131 * 50.87105 * 11 10 8 13 13 C 1.53955 * 113.76475 * 182.54408 * 11 10 8 14 14 C 1.53952 * 86.28761 * 137.90538 * 13 11 10 15 15 N 1.47578 * 86.11791 * 336.39282 * 14 13 11 16 16 C 1.36939 * 134.48964 * 204.63518 * 15 14 13 17 17 H 1.08003 * 119.99634 * 192.39477 * 16 15 14 18 18 C 1.38810 * 119.99888 * 12.39659 * 16 15 14 19 19 N 1.31613 * 120.00528 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99383 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47540 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46857 * 120.00360 * 20 18 16 23 23 H 1.48503 * 109.46597 * 239.99546 * 20 18 16 24 24 C 1.39723 * 118.27713 * 359.97438 * 5 4 3 25 25 C 1.38739 * 119.07506 * 0.02562 * 24 5 4 26 26 O 1.35688 * 119.58170 * 180.02562 * 25 24 5 27 27 C 1.42895 * 117.00084 * 179.97438 * 26 25 24 28 28 N 1.32253 * 119.58025 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.46984 * 299.99871 * 1 2 3 30 30 H 1.09004 * 109.47353 * 59.99562 * 1 2 3 31 31 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.46297 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.46804 * 96.06215 * 9 8 6 34 34 H 1.09003 * 109.47290 * 216.06370 * 9 8 6 35 35 H 1.08999 * 109.46817 * 336.06666 * 9 8 6 36 36 H 1.08996 * 109.46525 * 217.86920 * 10 8 6 37 37 H 1.08998 * 109.46900 * 337.86891 * 10 8 6 38 38 H 1.08995 * 113.74433 * 252.25165 * 13 11 10 39 39 H 1.08999 * 113.74320 * 23.45729 * 13 11 10 40 40 H 1.08999 * 113.76653 * 90.69625 * 14 13 11 41 41 H 1.08995 * 113.76722 * 221.97479 * 14 13 11 42 42 H 0.96994 * 120.00484 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.46301 * 180.02562 * 24 5 4 44 44 H 1.09002 * 109.47321 * 300.00432 * 27 26 25 45 45 H 1.09002 * 109.47030 * 60.00454 * 27 26 25 46 46 H 1.09004 * 109.47267 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2714 -0.0005 5 6 4.0544 2.5218 0.0000 6 6 5.5318 2.6347 0.0000 7 8 6.0661 3.6181 -0.4730 8 7 6.2831 1.6463 0.5247 9 6 5.6503 0.4013 0.9672 10 6 7.7326 1.8171 0.6526 11 6 8.0708 2.2511 2.0802 12 1 7.6191 1.6107 2.8378 13 6 9.5694 2.5200 2.3082 14 6 9.1231 3.7535 3.1140 15 7 7.8775 3.6937 2.3249 16 6 6.9248 4.6090 1.9645 17 1 5.9890 4.2759 1.5405 18 6 7.1620 5.9648 2.1442 19 7 8.3021 6.3707 2.6613 20 14 5.8626 7.2134 1.6518 21 1 4.6802 6.5055 1.0986 22 1 5.4560 8.0007 2.8435 23 1 6.4190 8.1267 0.6215 24 6 3.2485 3.6632 0.0005 25 6 1.8691 3.5145 0.0010 26 8 1.0766 4.6160 0.0010 27 6 -0.3357 4.3990 0.0010 28 7 1.3166 2.3128 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0199 0.3660 -0.0014 33 1 5.7194 -0.3432 0.1740 34 1 6.1589 0.0317 1.8577 35 1 4.6020 0.5890 1.1990 36 1 8.2304 0.8728 0.4323 37 1 8.0719 2.5791 -0.0490 38 1 10.0653 1.7585 2.9101 39 1 10.1154 2.7633 1.3967 40 1 8.9801 3.5560 4.1764 41 1 9.7234 4.6432 2.9240 42 1 8.4677 7.3181 2.7872 43 1 3.6931 4.6475 0.0006 44 1 -0.6169 3.8359 -0.8890 45 1 -0.6169 3.8361 0.8910 46 1 -0.8509 5.3596 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085698677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:07 Heat of formation + Delta-G solvation = 36.294895 kcal Electronic energy + Delta-G solvation = -30369.064539 eV Core-core repulsion = 26264.184670 eV Total energy + Delta-G solvation = -4104.879869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18711 -39.55475 -39.00309 -37.71813 -36.82209 -35.22061 -32.64159 -31.93651 -30.70179 -28.56908 -27.99556 -27.70817 -26.79280 -26.40374 -23.95662 -23.32443 -23.17109 -21.97301 -19.98316 -18.96314 -18.33629 -17.99569 -16.87438 -16.66946 -16.44684 -16.02745 -15.93756 -15.66005 -15.43084 -15.00687 -14.84967 -14.57441 -13.87311 -13.80085 -13.59949 -13.34168 -13.15546 -12.98461 -12.63744 -12.53748 -12.23718 -11.91411 -11.74578 -11.50657 -11.34581 -11.24650 -10.94509 -10.77828 -10.71702 -10.57778 -10.36838 -10.12327 -9.88383 -9.81245 -9.56640 -9.38082 -9.20404 -8.53453 -8.24586 -8.09348 -6.63321 -5.54986 -2.87860 0.81518 1.14633 2.74902 2.91043 3.19313 3.37296 3.53981 3.60761 3.62896 3.86058 4.09881 4.60429 4.69792 4.87583 5.01175 5.03125 5.06383 5.10681 5.14871 5.22980 5.28513 5.32641 5.37009 5.44685 5.45732 5.60920 5.71933 5.73587 5.79791 5.89681 6.00973 6.02821 6.05856 6.27725 6.40173 6.47314 6.69654 6.74872 6.79287 6.96666 7.24869 7.38061 7.58164 7.60745 7.74705 7.81774 8.22607 8.61415 9.26275 9.93808 10.79352 11.60541 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.004646 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.934135 B = 6024.907868 C = 7934.266897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.350 3.650 4 C -0.227 4.227 5 C -0.007 4.007 6 C 0.551 3.449 7 O -0.479 6.479 8 N -0.601 5.601 9 C 0.045 3.955 10 C 0.116 3.884 11 C 0.123 3.877 12 H 0.043 0.957 13 C -0.155 4.155 14 C 0.144 3.856 15 N -0.596 5.596 16 C -0.192 4.192 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.291 1.291 24 C -0.168 4.168 25 C 0.357 3.643 26 O -0.299 6.299 27 C 0.041 3.959 28 N -0.587 5.587 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.175 0.825 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.084 0.916 42 H 0.248 0.752 43 H 0.158 0.842 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -15.283 -4.869 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.172 3.828 4 C -0.248 4.248 5 C -0.017 4.017 6 C 0.337 3.663 7 O -0.352 6.352 8 N -0.335 5.335 9 C -0.098 4.098 10 C -0.007 4.007 11 C 0.014 3.986 12 H 0.060 0.940 13 C -0.194 4.194 14 C 0.019 3.981 15 N -0.321 5.321 16 C -0.320 4.320 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.218 1.218 24 C -0.189 4.189 25 C 0.180 3.820 26 O -0.206 6.206 27 C -0.054 4.054 28 N -0.327 5.327 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.192 0.808 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.176 0.824 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.977 -14.456 -5.183 20.765 hybrid contribution -0.557 0.707 0.052 0.901 sum -14.534 -13.749 -5.131 20.654 Atomic orbital electron populations 1.22840 0.77354 1.02888 1.02348 1.86251 1.22800 1.24124 1.87935 1.19177 0.88731 0.83340 0.91520 1.21974 0.91997 0.99887 1.10930 1.20047 0.94739 0.91979 0.94933 1.17783 0.85078 0.83293 0.80148 1.90911 1.72396 1.28881 1.42973 1.47476 1.08294 1.15621 1.62073 1.22732 1.00832 0.86249 0.99954 1.21966 0.77961 1.01105 0.99642 1.22678 0.93501 0.88762 0.93629 0.94024 1.23752 0.95278 0.99447 1.00926 1.22383 0.87993 0.95536 0.92160 1.45963 1.26362 1.02019 1.57800 1.19128 0.94650 0.85542 1.32685 0.90149 1.24739 0.97167 0.96659 1.01880 1.69806 1.23432 1.13685 1.50329 0.86167 0.81180 0.81790 0.77472 1.20087 1.22417 1.21839 1.21098 0.89859 1.01307 1.06668 1.19137 0.88311 0.83620 0.90981 1.86336 1.19267 1.27462 1.87502 1.22858 0.77613 1.02813 1.02161 1.66568 1.41960 0.98577 1.25615 0.92374 0.92434 0.88585 0.80807 0.92379 0.91289 0.88227 0.91450 0.88520 0.93315 0.90644 0.96390 0.89791 0.94174 0.82425 0.92433 0.92363 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.47 10.47 -18.76 -0.20 -3.67 16 3 C 0.35 4.75 7.48 -17.18 -0.13 4.62 16 4 C -0.23 -3.13 7.59 -38.84 -0.29 -3.43 16 5 C -0.01 -0.11 5.66 -104.71 -0.59 -0.71 16 6 C 0.55 10.84 5.75 -12.18 -0.07 10.77 16 7 O -0.48 -11.51 13.85 5.36 0.07 -11.43 16 8 N -0.60 -10.14 2.88 -182.57 -0.53 -10.66 16 9 C 0.04 0.54 8.87 59.85 0.53 1.07 16 10 C 0.12 2.06 5.43 -4.04 -0.02 2.04 16 11 C 0.12 2.45 4.52 -66.86 -0.30 2.15 16 12 H 0.04 0.81 8.00 -51.93 -0.42 0.40 16 13 C -0.16 -2.93 7.86 -25.80 -0.20 -3.14 16 14 C 0.14 3.47 7.85 -2.97 -0.02 3.45 16 15 N -0.60 -15.41 3.55 -170.73 -0.61 -16.02 16 16 C -0.19 -5.54 9.13 -15.06 -0.14 -5.68 16 17 H 0.08 2.30 4.76 -52.48 -0.25 2.05 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -28.62 11.26 55.49 0.62 -27.99 16 20 Si 0.90 24.09 29.55 -169.99 -5.02 19.07 16 21 H -0.28 -7.12 7.01 56.52 0.40 -6.73 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.29 -7.87 7.11 56.52 0.40 -7.46 16 24 C -0.17 -3.05 9.61 -38.84 -0.37 -3.42 16 25 C 0.36 5.74 7.48 -17.18 -0.13 5.61 16 26 O -0.30 -4.52 10.47 -18.77 -0.20 -4.71 16 27 C 0.04 0.42 10.38 101.05 1.05 1.47 16 28 N -0.59 -8.39 8.02 -13.45 -0.11 -8.49 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.18 1.95 4.39 -52.49 -0.23 1.72 16 33 H 0.06 0.54 7.74 -51.93 -0.40 0.14 16 34 H 0.07 0.76 7.98 -51.93 -0.41 0.34 16 35 H 0.10 1.18 4.04 -52.02 -0.21 0.97 16 36 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 37 H 0.10 2.03 7.14 -51.93 -0.37 1.66 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 2.26 6.70 -51.93 -0.35 1.92 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.16 3.23 7.84 -52.49 -0.41 2.81 16 44 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 45 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -35.79 372.89 -6.49 -42.28 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.41 Total: 0.19 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 0.26 Total: 15.82 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.62 Total: -63.17 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.32 Total: -19.82 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.02 Total: 19.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.79 -6.49 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085698677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.578 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds