Wall clock time and date at job start Tue Mar 31 2020 18:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99832 * 2 1 4 4 C 1.53001 * 109.46793 * 95.72174 * 3 2 1 5 5 H 1.09001 * 113.04290 * 64.96230 * 4 3 2 6 6 C 1.53943 * 113.76750 * 293.20711 * 4 3 2 7 7 C 1.53949 * 86.29132 * 222.09437 * 6 4 3 8 8 N 1.47580 * 113.76559 * 196.71260 * 4 3 2 9 9 C 1.36942 * 134.49570 * 318.94604 * 8 4 3 10 10 H 1.08001 * 119.99701 * 355.30122 * 9 8 4 11 11 C 1.38807 * 120.00213 * 175.31031 * 9 8 4 12 12 N 1.31625 * 120.00053 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00053 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47043 * 89.99697 * 13 11 9 15 15 H 1.48500 * 109.46935 * 209.99783 * 13 11 9 16 16 H 1.48496 * 109.46829 * 329.99804 * 13 11 9 17 17 C 1.34775 * 120.00115 * 180.02562 * 2 1 3 18 18 O 1.21616 * 120.00338 * 185.11565 * 17 2 1 19 19 C 1.47423 * 120.00021 * 5.11482 * 17 2 1 20 20 N 1.36062 * 126.44760 * 5.12526 * 19 17 2 21 21 C 1.29933 * 108.47819 * 179.82428 * 20 19 17 22 22 O 1.34055 * 109.24102 * 0.44158 * 21 20 19 23 23 C 1.34254 * 108.22589 * 359.72576 * 22 21 20 24 24 C 1.50702 * 126.52517 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.82263 * 195.54295 * 24 23 22 26 26 C 1.54376 * 109.83289 * 74.55317 * 24 23 22 27 27 C 1.55303 * 102.25412 * 219.13031 * 26 24 23 28 28 C 1.54946 * 100.94256 * 34.13666 * 27 26 24 29 29 O 1.43240 * 109.82509 * 316.41984 * 24 23 22 30 30 H 1.09004 * 109.47063 * 95.62430 * 1 2 3 31 31 H 1.09002 * 109.46794 * 215.62227 * 1 2 3 32 32 H 1.08998 * 109.47305 * 335.62269 * 1 2 3 33 33 H 1.08996 * 109.46779 * 335.71751 * 3 2 1 34 34 H 1.09001 * 109.46662 * 215.71833 * 3 2 1 35 35 H 1.09000 * 113.73911 * 107.75433 * 6 4 3 36 36 H 1.09000 * 113.74384 * 336.44052 * 6 4 3 37 37 H 1.08999 * 113.77377 * 137.90540 * 7 6 4 38 38 H 1.09000 * 113.76990 * 269.30782 * 7 6 4 39 39 H 0.96995 * 120.00144 * 180.02562 * 12 11 9 40 40 H 1.08002 * 125.38370 * 180.15992 * 21 20 19 41 41 H 1.08999 * 110.85123 * 337.32396 * 26 24 23 42 42 H 1.09008 * 110.84299 * 100.94238 * 26 24 23 43 43 H 1.09000 * 111.12842 * 276.21961 * 27 26 24 44 44 H 1.09005 * 111.16301 * 152.06903 * 27 26 24 45 45 H 1.08999 * 110.31082 * 204.63887 * 28 27 26 46 46 H 1.09003 * 110.31070 * 82.46940 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5770 1.6385 1.4353 5 1 3.2780 0.9358 1.8858 6 6 1.3693 1.9700 2.3306 7 6 2.2195 3.1319 2.8759 8 7 2.9624 3.0532 1.6030 9 6 3.7092 3.9377 0.8714 10 1 4.2248 3.6036 -0.0168 11 6 3.8037 5.2634 1.2716 12 7 3.1750 5.6706 2.3539 13 14 4.8230 6.4698 0.2740 14 1 3.9676 7.1025 -0.7620 15 1 5.3691 7.5181 1.1728 16 1 5.9426 5.7477 -0.3820 17 6 2.1389 -1.1672 -0.0005 18 8 3.3514 -1.1694 0.0934 19 6 1.4062 -2.4413 -0.1149 20 7 0.0698 -2.5894 -0.3234 21 6 -0.2015 -3.8592 -0.3696 22 8 0.9270 -4.5591 -0.1863 23 6 1.9383 -3.6907 -0.0260 24 6 3.3870 -4.0342 0.2073 25 1 3.9214 -3.1559 0.5693 26 6 4.0251 -4.5333 -1.1068 27 6 4.9405 -5.6861 -0.6117 28 6 4.1003 -6.2442 0.5645 29 8 3.4868 -5.0933 1.1665 30 1 -0.3633 -0.1007 -1.0228 31 1 -0.3633 -0.8354 0.5986 32 1 -0.3634 0.9360 0.4241 33 1 1.5679 2.0517 -0.4226 34 1 3.1017 1.1662 -0.6000 35 1 1.1488 1.2021 3.0720 36 1 0.4880 2.2934 1.7767 37 1 1.6637 4.0609 3.0034 38 1 2.8155 2.8679 3.7495 39 1 3.2407 6.5972 2.6333 40 1 -1.1822 -4.2839 -0.5261 41 1 3.2633 -4.9089 -1.7899 42 1 4.6137 -3.7449 -1.5761 43 1 5.8997 -5.3038 -0.2626 44 1 5.0793 -6.4392 -1.3875 45 1 4.7451 -6.7491 1.2839 46 1 3.3376 -6.9288 0.1933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085763346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:23 Heat of formation + Delta-G solvation = 18.772048 kcal Electronic energy + Delta-G solvation = -29643.924965 eV Core-core repulsion = 25538.285249 eV Total energy + Delta-G solvation = -4105.639717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66207 -39.72767 -39.56025 -37.72370 -35.38078 -34.75235 -32.63798 -32.07990 -31.82959 -29.04131 -28.14150 -27.77605 -26.30584 -24.15501 -23.62120 -23.25632 -22.33681 -22.08312 -21.20803 -19.73238 -18.98656 -17.65306 -17.12669 -16.97794 -16.79414 -16.51033 -16.14127 -15.84123 -15.29784 -15.26293 -14.63907 -14.20786 -14.02495 -13.94885 -13.57279 -13.46899 -13.33637 -12.74273 -12.58873 -12.30017 -12.18972 -12.13801 -11.99699 -11.65066 -11.52319 -11.34305 -11.29381 -11.02453 -10.86010 -10.67581 -10.56026 -10.39551 -10.14300 -9.92020 -9.73596 -9.65348 -9.47954 -9.16128 -8.70992 -8.25953 -6.78646 -5.68458 -3.01711 0.89084 1.91048 2.32566 3.10192 3.27463 3.43510 3.48668 3.50631 3.54050 3.83217 4.09528 4.15381 4.48798 4.51796 4.61948 4.74333 4.85042 4.99486 5.24979 5.27331 5.29472 5.34732 5.39956 5.44513 5.51361 5.55045 5.61453 5.66294 5.71490 5.78247 5.85720 5.93117 6.04778 6.18115 6.27634 6.34421 6.53734 6.56236 6.68630 6.78899 6.90494 7.23731 7.34077 7.52239 7.61843 7.67828 8.07463 8.26839 9.12582 9.78893 10.69395 11.47699 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002844 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.725408 B = 9841.861757 C =10677.754225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.587 5.587 3 C 0.120 3.880 4 C 0.131 3.869 5 H 0.050 0.950 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.602 5.602 9 C -0.220 4.220 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.593 3.407 18 O -0.534 6.534 19 C -0.054 4.054 20 N -0.457 5.457 21 C 0.169 3.831 22 O -0.192 6.192 23 C 0.027 3.973 24 C 0.156 3.844 25 H 0.146 0.854 26 C -0.145 4.145 27 C -0.154 4.154 28 C 0.046 3.954 29 O -0.368 6.368 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.252 0.748 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -25.300 -6.812 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.317 5.317 3 C -0.003 4.003 4 C 0.023 3.977 5 H 0.067 0.933 6 C -0.196 4.196 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.347 4.347 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.379 3.621 18 O -0.412 6.412 19 C -0.174 4.174 20 N -0.186 5.186 21 C -0.059 4.059 22 O -0.077 6.077 23 C -0.030 4.030 24 C 0.098 3.902 25 H 0.163 0.837 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.030 4.030 29 O -0.286 6.286 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.269 0.731 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.975 -24.455 -6.685 26.047 hybrid contribution 0.729 0.104 -0.631 0.970 sum -5.246 -24.351 -7.316 25.962 Atomic orbital electron populations 1.22019 0.78446 1.03121 1.02137 1.47629 1.07729 1.05600 1.70773 1.21867 0.96714 0.82427 0.99290 1.22535 0.93775 0.88640 0.92774 0.93261 1.23763 0.97478 0.99335 0.99025 1.22272 0.90595 0.95893 0.88186 1.46018 1.60256 1.04928 1.21635 1.19025 1.22358 0.88437 1.04929 0.90431 1.24763 1.00860 0.96836 0.97989 1.69824 1.46487 1.15770 1.24769 0.86154 0.79738 0.81062 0.79031 1.21595 1.21733 1.20708 1.16772 0.86040 0.81853 0.77406 1.90765 1.12839 1.86308 1.51304 1.21587 0.89965 0.94613 1.11214 1.71032 1.13088 1.17768 1.16741 1.28169 0.91421 0.85864 1.00429 1.84378 1.16742 1.39127 1.67501 1.24163 0.91084 0.87447 1.00311 1.21812 0.84208 0.93825 0.90381 0.83699 1.23176 0.99408 0.99254 0.96447 1.23308 0.99525 0.97904 0.98459 1.23484 0.95571 0.88665 0.95288 1.88553 1.81822 1.23040 1.35233 0.92705 0.89803 0.91138 0.89527 0.90697 0.93490 0.90943 0.90400 0.95997 0.93776 0.73057 0.90342 0.88419 0.89577 0.89426 0.89082 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 9.05 59.85 0.54 1.68 16 2 N -0.59 -9.61 2.80 -182.85 -0.51 -10.12 16 3 C 0.12 2.29 5.18 -4.04 -0.02 2.26 16 4 C 0.13 2.85 4.53 -66.86 -0.30 2.54 16 5 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.16 -3.15 7.35 -25.80 -0.19 -3.34 16 7 C 0.16 3.83 7.64 -2.97 -0.02 3.80 16 8 N -0.60 -15.84 3.57 -170.73 -0.61 -16.45 16 9 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.76 11.30 55.49 0.63 -27.14 16 13 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.59 9.99 7.61 -12.52 -0.10 9.90 16 18 O -0.53 -10.16 14.34 5.26 0.08 -10.08 16 19 C -0.05 -0.76 6.61 -83.02 -0.55 -1.31 16 20 N -0.46 -5.44 8.08 -11.48 -0.09 -5.54 16 21 C 0.17 1.46 13.19 51.96 0.69 2.14 16 22 O -0.19 -2.07 10.73 6.46 0.07 -2.00 16 23 C 0.03 0.35 6.19 -35.08 -0.22 0.13 16 24 C 0.16 1.89 3.74 -27.16 -0.10 1.79 16 25 H 0.15 2.06 5.93 -51.93 -0.31 1.75 16 26 C -0.15 -1.32 6.53 -24.79 -0.16 -1.48 16 27 C -0.15 -1.08 7.16 -24.48 -0.18 -1.25 16 28 C 0.05 0.38 7.78 38.18 0.30 0.67 16 29 O -0.37 -4.49 11.00 -35.28 -0.39 -4.88 16 30 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.08 1.09 5.89 -51.93 -0.31 0.78 16 32 H 0.07 0.91 6.75 -51.93 -0.35 0.56 16 33 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 34 H 0.07 1.52 7.68 -51.93 -0.40 1.12 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.36 7.04 -51.93 -0.37 1.00 16 37 H 0.08 2.08 6.95 -51.93 -0.36 1.72 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.25 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.08 0.67 7.84 -51.93 -0.41 0.26 16 42 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -34.86 374.84 -7.46 -42.32 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.69 Total: -0.10 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -0.57 Total: 10.78 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.59 Total: -59.24 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.24 Total: -16.96 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.86 -7.46 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085763346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.093 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds