Wall clock time and date at job start Tue Mar 31 2020 18:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99832 * 2 1 4 4 C 1.53001 * 109.46793 * 95.72174 * 3 2 1 5 5 H 1.09001 * 113.04290 * 64.96230 * 4 3 2 6 6 C 1.53943 * 113.76750 * 293.20711 * 4 3 2 7 7 C 1.53949 * 86.29132 * 222.09437 * 6 4 3 8 8 N 1.47580 * 113.76559 * 196.71260 * 4 3 2 9 9 C 1.36942 * 134.49570 * 318.94604 * 8 4 3 10 10 H 1.08001 * 119.99701 * 355.30122 * 9 8 4 11 11 C 1.38807 * 120.00213 * 175.31031 * 9 8 4 12 12 N 1.31625 * 120.00053 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00053 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47043 * 89.99697 * 13 11 9 15 15 H 1.48500 * 109.46935 * 209.99783 * 13 11 9 16 16 H 1.48496 * 109.46829 * 329.99804 * 13 11 9 17 17 C 1.34775 * 120.00115 * 180.02562 * 2 1 3 18 18 O 1.21616 * 120.00338 * 185.11565 * 17 2 1 19 19 C 1.47423 * 120.00021 * 5.11482 * 17 2 1 20 20 N 1.36062 * 126.44760 * 5.12526 * 19 17 2 21 21 C 1.29933 * 108.47819 * 179.82428 * 20 19 17 22 22 O 1.34055 * 109.24102 * 0.44158 * 21 20 19 23 23 C 1.34254 * 108.22589 * 359.72576 * 22 21 20 24 24 C 1.50702 * 126.52517 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.82263 * 195.54295 * 24 23 22 26 26 C 1.54376 * 109.83289 * 74.55317 * 24 23 22 27 27 C 1.55303 * 102.25412 * 219.13031 * 26 24 23 28 28 C 1.54946 * 100.94256 * 34.13666 * 27 26 24 29 29 O 1.43240 * 109.82509 * 316.41984 * 24 23 22 30 30 H 1.09004 * 109.47063 * 95.62430 * 1 2 3 31 31 H 1.09002 * 109.46794 * 215.62227 * 1 2 3 32 32 H 1.08998 * 109.47305 * 335.62269 * 1 2 3 33 33 H 1.08996 * 109.46779 * 335.71751 * 3 2 1 34 34 H 1.09001 * 109.46662 * 215.71833 * 3 2 1 35 35 H 1.09000 * 113.73911 * 107.75433 * 6 4 3 36 36 H 1.09000 * 113.74384 * 336.44052 * 6 4 3 37 37 H 1.08999 * 113.77377 * 137.90540 * 7 6 4 38 38 H 1.09000 * 113.76990 * 269.30782 * 7 6 4 39 39 H 0.96995 * 120.00144 * 180.02562 * 12 11 9 40 40 H 1.08002 * 125.38370 * 180.15992 * 21 20 19 41 41 H 1.08999 * 110.85123 * 337.32396 * 26 24 23 42 42 H 1.09008 * 110.84299 * 100.94238 * 26 24 23 43 43 H 1.09000 * 111.12842 * 276.21961 * 27 26 24 44 44 H 1.09005 * 111.16301 * 152.06903 * 27 26 24 45 45 H 1.08999 * 110.31082 * 204.63887 * 28 27 26 46 46 H 1.09003 * 110.31070 * 82.46940 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5770 1.6385 1.4353 5 1 3.2780 0.9358 1.8858 6 6 1.3693 1.9700 2.3306 7 6 2.2195 3.1319 2.8759 8 7 2.9624 3.0532 1.6030 9 6 3.7092 3.9377 0.8714 10 1 4.2248 3.6036 -0.0168 11 6 3.8037 5.2634 1.2716 12 7 3.1750 5.6706 2.3539 13 14 4.8230 6.4698 0.2740 14 1 3.9676 7.1025 -0.7620 15 1 5.3691 7.5181 1.1728 16 1 5.9426 5.7477 -0.3820 17 6 2.1389 -1.1672 -0.0005 18 8 3.3514 -1.1694 0.0934 19 6 1.4062 -2.4413 -0.1149 20 7 0.0698 -2.5894 -0.3234 21 6 -0.2015 -3.8592 -0.3696 22 8 0.9270 -4.5591 -0.1863 23 6 1.9383 -3.6907 -0.0260 24 6 3.3870 -4.0342 0.2073 25 1 3.9214 -3.1559 0.5693 26 6 4.0251 -4.5333 -1.1068 27 6 4.9405 -5.6861 -0.6117 28 6 4.1003 -6.2442 0.5645 29 8 3.4868 -5.0933 1.1665 30 1 -0.3633 -0.1007 -1.0228 31 1 -0.3633 -0.8354 0.5986 32 1 -0.3634 0.9360 0.4241 33 1 1.5679 2.0517 -0.4226 34 1 3.1017 1.1662 -0.6000 35 1 1.1488 1.2021 3.0720 36 1 0.4880 2.2934 1.7767 37 1 1.6637 4.0609 3.0034 38 1 2.8155 2.8679 3.7495 39 1 3.2407 6.5972 2.6333 40 1 -1.1822 -4.2839 -0.5261 41 1 3.2633 -4.9089 -1.7899 42 1 4.6137 -3.7449 -1.5761 43 1 5.8997 -5.3038 -0.2626 44 1 5.0793 -6.4392 -1.3875 45 1 4.7451 -6.7491 1.2839 46 1 3.3376 -6.9288 0.1933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085763346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:22 Heat of formation + Delta-G solvation = -6.099170 kcal Electronic energy + Delta-G solvation = -29645.003462 eV Core-core repulsion = 25538.285249 eV Total energy + Delta-G solvation = -4106.718214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.52846 -41.02004 -40.42716 -39.48490 -36.65208 -35.78391 -34.20944 -33.42477 -32.62348 -30.38693 -29.85877 -29.12839 -27.47645 -25.47876 -25.23193 -24.40287 -23.67213 -22.77393 -22.20656 -21.03910 -20.67768 -18.91028 -18.48315 -17.90749 -17.85782 -17.55929 -17.38625 -17.00629 -16.75912 -16.48539 -16.04775 -15.82310 -15.30072 -15.05559 -14.88211 -14.61782 -14.17536 -14.12834 -13.98890 -13.84047 -13.55806 -13.32523 -12.94922 -12.89145 -12.83909 -12.59307 -12.56205 -12.33368 -12.27004 -12.24913 -11.97519 -11.80122 -11.61479 -11.57948 -11.37312 -11.10442 -10.88609 -10.83558 -10.12300 -9.63606 -8.89956 -7.88123 -5.23387 -0.07888 1.04911 1.44519 1.46626 1.47299 1.55742 1.88171 2.12747 2.48807 2.73602 3.01392 3.30491 3.31403 3.38557 3.44059 3.65279 3.82435 3.87142 4.04567 4.14074 4.15714 4.27055 4.29684 4.36486 4.40967 4.49392 4.58970 4.66885 4.72830 4.78716 4.83289 4.85898 4.91271 4.93452 4.95019 5.00019 5.03786 5.15010 5.22643 5.27006 5.45958 5.56654 5.71071 5.80715 5.96156 6.24388 6.46477 6.93420 6.98499 7.61846 8.58009 9.27713 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002844 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.725408 B = 9841.861757 C =10677.754225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.587 5.587 3 C 0.137 3.863 4 C 0.131 3.869 5 H 0.030 0.970 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.627 5.627 9 C -0.232 4.232 10 H 0.078 0.922 11 C -0.065 4.065 12 N -0.952 5.952 13 Si 0.977 3.023 14 H -0.281 1.281 15 H -0.294 1.294 16 H -0.273 1.273 17 C 0.586 3.414 18 O -0.567 6.567 19 C -0.075 4.075 20 N -0.480 5.480 21 C 0.199 3.801 22 O -0.190 6.190 23 C 0.026 3.974 24 C 0.151 3.849 25 H 0.115 0.885 26 C -0.142 4.142 27 C -0.145 4.145 28 C 0.038 3.962 29 O -0.392 6.392 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.309 0.691 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 -27.672 -8.261 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.318 5.318 3 C 0.013 3.987 4 C 0.024 3.976 5 H 0.047 0.953 6 C -0.162 4.162 7 C 0.023 3.977 8 N -0.353 5.353 9 C -0.361 4.361 10 H 0.096 0.904 11 C -0.258 4.258 12 N -0.601 5.601 13 Si 0.805 3.195 14 H -0.207 1.207 15 H -0.221 1.221 16 H -0.198 1.198 17 C 0.375 3.625 18 O -0.447 6.447 19 C -0.194 4.194 20 N -0.208 5.208 21 C -0.029 4.029 22 O -0.077 6.077 23 C -0.031 4.031 24 C 0.093 3.907 25 H 0.132 0.868 26 C -0.179 4.179 27 C -0.183 4.183 28 C -0.037 4.037 29 O -0.312 6.312 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.324 0.676 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.581 -26.856 -8.149 29.071 hybrid contribution 1.181 0.697 -0.145 1.379 sum -6.400 -26.159 -8.294 28.179 Atomic orbital electron populations 1.22150 0.76247 1.03700 1.03203 1.47646 1.08889 1.04455 1.70787 1.21426 0.96420 0.83955 0.96852 1.22570 0.93980 0.86133 0.94878 0.95266 1.23517 0.96655 0.97527 0.98532 1.22246 0.91174 0.96682 0.87615 1.46395 1.60143 1.06601 1.22200 1.19363 1.22312 0.89243 1.05134 0.90405 1.25598 1.02369 0.98539 0.99248 1.70009 1.47951 1.15775 1.26341 0.85102 0.78355 0.78473 0.77534 1.20714 1.22078 1.19833 1.17197 0.85907 0.82848 0.76583 1.90747 1.14420 1.86983 1.52586 1.21200 0.91224 0.93580 1.13404 1.70970 1.11644 1.19631 1.18600 1.29447 0.92219 0.84827 0.96377 1.84412 1.16907 1.38801 1.67552 1.24167 0.91717 0.87367 0.99886 1.21651 0.84172 0.93140 0.91722 0.86782 1.23165 0.99822 0.99833 0.95104 1.23316 0.98741 0.97539 0.98668 1.23754 0.96236 0.87696 0.96046 1.88517 1.82322 1.24109 1.36226 0.91444 0.89017 0.90608 0.89181 0.92654 0.90864 0.89137 0.92813 0.97276 0.94255 0.67596 0.89414 0.89053 0.89629 0.86718 0.87650 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 9.05 127.77 1.16 3.35 16 2 N -0.59 -19.05 2.80 -850.65 -2.38 -21.42 16 3 C 0.14 5.30 5.18 86.38 0.45 5.75 16 4 C 0.13 5.82 4.53 45.09 0.20 6.03 16 5 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.12 -4.88 7.35 31.25 0.23 -4.65 16 7 C 0.15 7.45 7.64 86.48 0.66 8.11 16 8 N -0.63 -33.76 3.57 -694.08 -2.48 -36.24 16 9 C -0.23 -13.52 10.51 84.03 0.88 -12.64 16 10 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 11 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 12 N -0.95 -58.75 11.30 21.65 0.24 -58.51 16 13 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 C 0.59 20.05 7.61 86.66 0.66 20.71 16 18 O -0.57 -22.65 14.34 -4.08 -0.06 -22.71 16 19 C -0.08 -2.09 6.61 40.41 0.27 -1.82 16 20 N -0.48 -10.25 8.08 -305.14 -2.46 -12.71 16 21 C 0.20 2.68 13.19 130.52 1.72 4.40 16 22 O -0.19 -3.61 10.73 0.41 0.00 -3.60 16 23 C 0.03 0.66 6.19 25.19 0.16 0.82 16 24 C 0.15 3.72 3.74 30.32 0.11 3.84 16 25 H 0.11 3.50 5.93 -2.39 -0.01 3.48 16 26 C -0.14 -2.49 6.53 31.85 0.21 -2.28 16 27 C -0.15 -1.79 7.16 32.05 0.23 -1.56 16 28 C 0.04 0.56 7.78 72.65 0.56 1.12 16 29 O -0.39 -9.45 11.00 -148.93 -1.64 -11.09 16 30 H 0.07 1.51 8.13 -2.38 -0.02 1.49 16 31 H 0.09 2.17 5.89 -2.39 -0.01 2.15 16 32 H 0.08 1.79 6.75 -2.39 -0.02 1.77 16 33 H 0.09 3.40 8.03 -2.39 -0.02 3.38 16 34 H 0.05 2.33 7.68 -2.39 -0.02 2.31 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 3.24 7.04 -2.39 -0.02 3.23 16 37 H 0.05 2.96 6.95 -2.39 -0.02 2.94 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.31 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.09 1.35 7.84 -2.39 -0.02 1.34 16 42 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -78.87 374.84 2.22 -76.64 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.00 Total: 12.69 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 7.97 Total: 27.86 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -7.08 Total: -128.89 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.69 Total: -37.40 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.87 2.22 -76.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085763346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.544 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds