Wall clock time and date at job start Tue Mar 31 2020 19:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35916 * 116.99719 * 2 1 4 4 C 1.39134 * 120.47457 * 359.97438 * 3 2 1 5 5 C 1.38542 * 118.37067 * 180.02562 * 4 3 2 6 6 C 1.38250 * 119.22398 * 0.02562 * 5 4 3 7 7 N 1.31848 * 120.88793 * 0.02562 * 6 5 4 8 8 C 1.31849 * 121.77859 * 359.69486 * 7 6 5 9 9 C 1.50695 * 119.66044 * 180.29257 * 8 7 6 10 10 C 1.50701 * 109.47288 * 270.29487 * 9 8 7 11 11 O 1.21281 * 119.99718 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99823 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99780 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.46225 * 35.02942 * 13 12 10 15 15 C 1.53038 * 109.46245 * 275.06920 * 13 12 10 16 16 C 1.53196 * 109.31475 * 178.61447 * 15 13 12 17 17 N 1.46927 * 108.77532 * 54.63387 * 16 15 13 18 18 C 1.36939 * 120.63154 * 126.36985 * 17 16 15 19 19 H 1.07991 * 120.00215 * 207.98495 * 18 17 16 20 20 C 1.38812 * 119.99531 * 27.98026 * 18 17 16 21 21 N 1.31616 * 120.00397 * 17.50818 * 20 18 17 22 22 Si 1.86806 * 119.99779 * 197.50123 * 20 18 17 23 23 H 1.48500 * 109.46879 * 94.06851 * 22 20 18 24 24 H 1.48499 * 109.47035 * 214.07139 * 22 20 18 25 25 H 1.48501 * 109.47254 * 334.07130 * 22 20 18 26 26 C 1.46923 * 118.73736 * 306.39349 * 17 16 15 27 27 C 1.53049 * 109.46063 * 154.99956 * 13 12 10 28 28 H 1.09000 * 109.49647 * 61.43479 * 27 13 12 29 29 O 1.42895 * 109.49444 * 301.33599 * 27 13 12 30 30 H 1.08994 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47236 * 60.00181 * 1 2 3 32 32 H 1.09006 * 109.47412 * 300.00329 * 1 2 3 33 33 H 1.08003 * 120.81717 * 0.02976 * 4 3 2 34 34 H 1.08005 * 120.38800 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.55600 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46970 * 30.29395 * 9 8 7 37 37 H 1.09000 * 109.47126 * 150.29388 * 9 8 7 38 38 H 0.96998 * 120.00542 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.49705 * 298.56437 * 15 13 12 40 40 H 1.08996 * 109.49765 * 58.66581 * 15 13 12 41 41 H 1.08998 * 109.58573 * 294.84869 * 16 15 13 42 42 H 1.08999 * 109.58599 * 174.42138 * 16 15 13 43 43 H 0.97004 * 120.00248 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.58799 * 293.81742 * 26 17 16 45 45 H 1.08999 * 109.70398 * 173.46836 * 26 17 16 46 46 H 0.96708 * 113.99628 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9717 3.5946 -0.0011 6 6 3.3542 3.5976 -0.0016 7 7 4.0334 2.4676 -0.0021 8 6 3.4306 1.2950 0.0039 9 6 4.2542 0.0331 0.0097 10 6 4.5343 -0.3906 -1.4092 11 8 4.1068 0.2673 -2.3340 12 7 5.2599 -1.5004 -1.6503 13 6 5.5317 -1.9125 -3.0296 14 1 5.6599 -1.0284 -3.6542 15 6 4.3575 -2.7416 -3.5549 16 6 4.6297 -3.1414 -5.0084 17 7 5.9287 -3.8247 -5.0756 18 6 6.0364 -5.0639 -5.6484 19 1 6.8108 -5.7432 -5.3243 20 6 5.1500 -5.4468 -6.6457 21 7 4.4421 -4.5376 -7.2817 22 14 4.9622 -7.2527 -7.0853 23 1 3.8296 -7.8331 -6.3201 24 1 4.6949 -7.3827 -8.5403 25 1 6.2127 -7.9777 -6.7451 26 6 7.1097 -3.1535 -4.5160 27 6 6.8098 -2.7536 -3.0679 28 1 6.6734 -3.6504 -2.4636 29 8 7.8996 -1.9889 -2.5488 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.2183 2.3519 -0.0005 34 1 1.4233 4.5251 -0.0019 35 1 3.8849 4.5382 -0.0016 36 1 5.1960 0.2163 0.5268 37 1 3.7054 -0.7566 0.5230 38 1 5.6015 -2.0268 -0.9106 39 1 4.2442 -3.6385 -2.9459 40 1 3.4435 -2.1498 -3.5055 41 1 4.6533 -2.2495 -5.6345 42 1 3.8449 -3.8135 -5.3556 43 1 3.8230 -4.8052 -7.9789 44 1 7.3356 -2.2626 -5.1019 45 1 7.9629 -3.8315 -4.5386 46 1 8.7436 -2.4610 -2.5427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090519977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:10 Heat of formation + Delta-G solvation = -90.934691 kcal Electronic energy + Delta-G solvation = -29379.535806 eV Core-core repulsion = 25269.138848 eV Total energy + Delta-G solvation = -4110.396958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85186 -40.87319 -39.38213 -39.03508 -36.97618 -35.73010 -34.23508 -33.71691 -32.47835 -31.72519 -30.31203 -29.14609 -28.30492 -26.88797 -24.32108 -23.84632 -23.81336 -23.14801 -21.49208 -21.04523 -19.11203 -18.93095 -18.16722 -18.05983 -18.02788 -17.61039 -16.93144 -16.73833 -16.58615 -16.04372 -15.70903 -15.56736 -15.30599 -15.02250 -14.93977 -14.83530 -14.50379 -14.25082 -14.08851 -13.86850 -13.65632 -13.29939 -13.19757 -12.98444 -12.88094 -12.73063 -12.39112 -12.35465 -12.30690 -12.11206 -12.03971 -11.89299 -11.39298 -11.10992 -10.95430 -10.61871 -10.57903 -10.55467 -10.00692 -9.33109 -8.77808 -7.90669 -5.38692 0.10366 0.30472 1.48615 1.49792 1.59378 1.70101 2.15453 2.25408 2.49062 2.84360 3.13508 3.26405 3.30691 3.62381 3.63935 3.82625 3.85391 3.96694 4.06512 4.09212 4.22478 4.26961 4.33876 4.35695 4.38994 4.47502 4.51165 4.53192 4.67733 4.70291 4.79795 4.84754 4.96519 5.02178 5.05093 5.11452 5.11980 5.35677 5.50587 5.52401 5.58879 5.64471 6.22883 6.33020 6.61756 6.90217 7.01445 7.08700 7.32726 7.76840 8.30322 9.16851 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002780 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.074793 B =10067.885808 C =11043.853016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.078 3.922 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.045 3.955 7 N -0.470 5.470 8 C 0.094 3.906 9 C -0.075 4.075 10 C 0.519 3.481 11 O -0.587 6.587 12 N -0.703 5.703 13 C 0.171 3.829 14 H 0.048 0.952 15 C -0.127 4.127 16 C 0.182 3.818 17 N -0.603 5.603 18 C -0.265 4.265 19 H 0.078 0.922 20 C -0.052 4.052 21 N -0.938 5.938 22 Si 0.973 3.027 23 H -0.284 1.284 24 H -0.298 1.298 25 H -0.263 1.263 26 C 0.117 3.883 27 C 0.103 3.897 28 H 0.077 0.923 29 O -0.571 6.571 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.415 0.585 39 H 0.072 0.928 40 H 0.053 0.947 41 H -0.013 1.013 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.008 0.992 45 H 0.077 0.923 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 10.687 21.728 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.030 3.970 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.112 4.112 7 N -0.179 5.179 8 C -0.046 4.046 9 C -0.116 4.116 10 C 0.306 3.694 11 O -0.467 6.467 12 N -0.354 5.354 13 C 0.066 3.934 14 H 0.066 0.934 15 C -0.167 4.167 16 C 0.055 3.945 17 N -0.328 5.328 18 C -0.395 4.395 19 H 0.096 0.904 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.800 3.200 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.187 1.187 26 C -0.010 4.010 27 C 0.042 3.958 28 H 0.095 0.905 29 O -0.378 6.378 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.005 0.995 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.096 0.904 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.203 11.390 21.026 24.472 hybrid contribution -0.833 -1.135 -0.900 1.671 sum -6.036 10.256 20.126 23.381 Atomic orbital electron populations 1.23390 0.76253 1.05775 1.02353 1.86071 1.23591 1.25903 1.88221 1.20021 0.93125 0.86287 0.97606 1.22074 1.02163 0.91662 1.03736 1.22386 0.95307 0.99463 0.97428 1.23138 0.92706 0.96437 0.98937 1.67408 1.41324 0.98387 1.10786 1.20133 0.88745 0.93698 1.01984 1.20431 1.02722 0.94986 0.93416 1.20910 0.76993 0.79741 0.91711 1.90683 1.53006 1.55183 1.47800 1.45787 1.54188 1.27055 1.08383 1.20587 0.93459 0.96176 0.83170 0.93393 1.22296 0.96916 0.99101 0.98366 1.20521 0.88722 0.94052 0.91184 1.44256 1.02637 1.17891 1.67991 1.19595 1.15866 0.90620 1.13428 0.90404 1.25917 1.00949 1.01790 0.96060 1.70223 1.29659 1.33499 1.24929 0.85176 0.78446 0.80018 0.76321 1.21117 1.22542 1.18697 1.21697 0.90927 0.95747 0.92582 1.22302 0.85806 0.92807 0.94876 0.90504 1.86470 1.20563 1.45145 1.85611 0.86521 0.92407 0.90401 0.81561 0.80848 0.80197 0.85370 0.84938 0.74836 0.90921 0.92872 0.99479 0.91901 0.94043 0.97384 0.90430 0.75392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.83 113.37 1.11 1.35 16 2 O -0.33 -7.52 9.55 -92.60 -0.88 -8.41 16 3 C 0.08 1.92 6.67 22.60 0.15 2.08 16 4 C -0.17 -3.19 9.14 22.56 0.21 -2.99 16 5 C -0.13 -2.12 10.11 22.35 0.23 -1.89 16 6 C 0.04 0.96 11.18 84.69 0.95 1.90 16 7 N -0.47 -13.22 10.27 -183.50 -1.88 -15.11 16 8 C 0.09 2.61 5.29 42.67 0.23 2.84 16 9 C -0.08 -1.87 5.77 29.10 0.17 -1.71 16 10 C 0.52 17.35 7.79 87.66 0.68 18.03 16 11 O -0.59 -25.66 15.70 -3.03 -0.05 -25.71 16 12 N -0.70 -21.35 4.92 -442.40 -2.18 -23.52 16 13 C 0.17 6.45 2.12 45.02 0.10 6.55 16 14 H 0.05 2.19 7.58 -2.38 -0.02 2.18 16 15 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 16 C 0.18 9.28 5.31 86.36 0.46 9.74 16 17 N -0.60 -30.35 2.99 -699.11 -2.09 -32.44 16 18 C -0.27 -14.26 9.58 84.03 0.81 -13.46 16 19 H 0.08 3.95 7.89 -2.92 -0.02 3.93 16 20 C -0.05 -2.87 4.90 84.86 0.42 -2.45 16 21 N -0.94 -56.28 11.22 21.65 0.24 -56.04 16 22 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 C 0.12 4.81 6.14 86.36 0.53 5.34 16 27 C 0.10 3.44 3.14 30.67 0.10 3.53 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 O -0.57 -16.20 13.16 -148.98 -1.96 -18.16 16 30 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 0.79 7.70 -2.39 -0.02 0.77 16 32 H 0.08 0.70 7.70 -2.38 -0.02 0.68 16 33 H 0.17 2.00 6.45 -2.91 -0.02 1.98 16 34 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.13 2.61 7.52 -2.39 -0.02 2.59 16 38 H 0.41 9.46 8.60 -92.71 -0.80 8.67 16 39 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 42 H 0.06 3.56 6.06 -2.39 -0.01 3.54 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.08 2.88 7.94 -2.39 -0.02 2.86 16 46 H 0.40 7.42 9.09 -74.05 -0.67 6.75 16 Total: -1.00 -81.36 379.27 -0.93 -82.29 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.45 Total: 27.10 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.30 Total: 23.79 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.91 Total: -127.11 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.89 Total: -52.27 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -81.36 -0.93 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.643 kcal (2) G-P(sol) polarization free energy of solvation -81.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds