Wall clock time and date at job start Tue Mar 31 2020 19:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35913 * 117.00434 * 2 1 4 4 C 1.39139 * 120.47027 * 359.97438 * 3 2 1 5 5 C 1.38535 * 118.37467 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.22186 * 0.02562 * 5 4 3 7 7 N 1.31854 * 120.88069 * 359.73963 * 6 5 4 8 8 C 1.31834 * 121.78571 * 0.53041 * 7 6 5 9 9 C 1.50699 * 119.66203 * 179.75089 * 8 7 6 10 10 C 1.50693 * 109.47040 * 269.72572 * 9 8 7 11 11 O 1.21282 * 120.00185 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00268 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00737 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.45832 * 34.96852 * 13 12 10 15 15 C 1.53044 * 109.46025 * 275.00114 * 13 12 10 16 16 C 1.53187 * 109.31375 * 178.61038 * 15 13 12 17 17 N 1.46926 * 108.77629 * 54.63309 * 16 15 13 18 18 C 1.36940 * 120.62975 * 126.36813 * 17 16 15 19 19 H 1.07994 * 119.99945 * 332.44875 * 18 17 16 20 20 C 1.38814 * 119.99741 * 152.45397 * 18 17 16 21 21 N 1.31619 * 120.00115 * 342.76707 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 162.77431 * 20 18 17 23 23 H 1.48503 * 109.46486 * 269.99339 * 22 20 18 24 24 H 1.48493 * 109.47319 * 29.99144 * 22 20 18 25 25 H 1.48501 * 109.47322 * 149.99625 * 22 20 18 26 26 C 1.46930 * 118.73855 * 306.64256 * 17 16 15 27 27 C 1.52766 * 109.00665 * 53.30825 * 26 17 16 28 28 H 1.08992 * 109.56465 * 185.54883 * 27 26 17 29 29 O 1.42899 * 109.38498 * 65.51395 * 27 26 17 30 30 H 1.08991 * 109.47149 * 59.99483 * 1 2 3 31 31 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46979 * 299.99774 * 1 2 3 33 33 H 1.07997 * 120.81511 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.39211 * 180.02562 * 5 4 3 35 35 H 1.07992 * 119.55913 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47030 * 149.72258 * 9 8 7 37 37 H 1.09005 * 109.46760 * 29.72520 * 9 8 7 38 38 H 0.97004 * 119.99603 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.49377 * 58.65536 * 15 13 12 40 40 H 1.09002 * 109.51969 * 298.57861 * 15 13 12 41 41 H 1.09004 * 109.58464 * 294.84792 * 16 15 13 42 42 H 1.08993 * 109.70417 * 174.49249 * 16 15 13 43 43 H 0.96998 * 120.00327 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58242 * 173.14315 * 26 17 16 45 45 H 1.08994 * 109.58811 * 293.56959 * 26 17 16 46 46 H 0.96703 * 114.00374 * 60.14330 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9717 3.5946 -0.0011 6 6 3.3543 3.5975 -0.0016 7 7 4.0334 2.4674 0.0036 8 6 3.4306 1.2949 -0.0010 9 6 4.2542 0.0329 -0.0004 10 6 4.5283 -0.3887 -1.4210 11 8 4.0977 0.2710 -2.3432 12 7 5.2528 -1.4982 -1.6669 13 6 5.5198 -1.9078 -3.0478 14 1 5.6450 -1.0225 -3.6714 15 6 4.3443 -2.7371 -3.5700 16 6 4.6113 -3.1342 -5.0252 17 7 5.9106 -3.8162 -5.0986 18 6 6.0172 -5.0543 -5.6739 19 1 5.1699 -5.7239 -5.6751 20 6 7.2144 -5.4486 -6.2554 21 7 8.1250 -4.5490 -6.5616 22 14 7.5330 -7.2560 -6.6034 23 1 8.1873 -7.8791 -5.4249 24 1 6.2446 -7.9425 -6.8748 25 1 8.4206 -7.3833 -7.7872 26 6 7.0922 -3.1472 -4.5374 27 6 6.7984 -2.7475 -3.0925 28 1 7.6307 -2.1642 -2.6988 29 8 6.6240 -3.9243 -2.3009 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2185 2.3519 -0.0014 34 1 1.4234 4.5251 -0.0011 35 1 3.8850 4.5380 -0.0016 36 1 3.7076 -0.7574 0.5141 37 1 5.1983 0.2154 0.5130 38 1 5.5982 -2.0252 -0.9293 39 1 3.4299 -2.1463 -3.5160 40 1 4.2336 -3.6351 -2.9622 41 1 4.6316 -2.2412 -5.6499 42 1 3.8261 -3.8055 -5.3729 43 1 8.9615 -4.8244 -6.9683 44 1 7.9431 -3.8280 -4.5609 45 1 7.3190 -2.2553 -5.1214 46 1 7.3972 -4.5049 -2.2837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090519979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:20 Heat of formation + Delta-G solvation = -60.602063 kcal Electronic energy + Delta-G solvation = -29453.170773 eV Core-core repulsion = 25344.089136 eV Total energy + Delta-G solvation = -4109.081637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.00818 -39.53091 -38.33866 -37.81253 -34.75343 -34.20502 -33.30699 -32.06624 -31.57320 -29.63813 -29.07366 -28.13622 -27.62838 -25.01612 -23.09304 -22.98145 -22.24527 -21.64139 -20.04630 -19.32317 -18.33030 -17.36048 -17.35062 -16.80370 -16.58047 -15.95762 -15.81368 -15.35977 -14.97085 -14.82604 -14.52091 -14.14442 -14.07257 -13.84705 -13.70882 -13.47387 -13.21109 -13.14216 -12.75221 -12.51617 -12.15916 -11.97832 -11.86201 -11.70819 -11.64323 -11.22066 -11.08547 -10.79919 -10.53932 -10.43658 -10.14437 -10.00964 -9.99739 -9.75906 -9.71601 -9.48622 -9.13819 -8.61162 -8.51852 -8.45981 -6.66088 -5.79418 -3.20002 0.90110 1.08284 2.91455 2.94920 3.32148 3.37865 3.45020 3.46622 3.75913 4.12853 4.38337 4.48115 4.49533 4.72361 4.83247 4.85974 4.88992 4.99255 5.09429 5.19227 5.24049 5.32481 5.34675 5.45845 5.51899 5.62142 5.64040 5.78480 5.87085 6.01179 6.10500 6.21925 6.27575 6.35938 6.52362 6.62322 6.82936 6.93753 6.95346 7.04130 7.21071 7.46193 7.79237 7.82242 7.86632 8.28125 8.45177 8.54281 9.20016 9.83269 10.40332 11.29428 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002526 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.542327 B =11083.311874 C =11468.338321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.131 3.869 9 C -0.088 4.088 10 C 0.520 3.480 11 O -0.540 6.540 12 N -0.719 5.719 13 C 0.164 3.836 14 H 0.089 0.911 15 C -0.135 4.135 16 C 0.148 3.852 17 N -0.583 5.583 18 C -0.242 4.242 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.280 1.280 25 H -0.292 1.292 26 C 0.145 3.855 27 C 0.074 3.926 28 H 0.044 0.956 29 O -0.560 6.560 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.402 0.598 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 12.534 17.765 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.094 4.094 7 N -0.148 5.148 8 C -0.010 4.010 9 C -0.128 4.128 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.369 5.369 13 C 0.060 3.940 14 H 0.106 0.894 15 C -0.175 4.175 16 C 0.021 3.979 17 N -0.305 5.305 18 C -0.371 4.371 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.219 1.219 26 C 0.018 3.982 27 C 0.012 3.988 28 H 0.062 0.938 29 O -0.365 6.365 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.236 0.764 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.269 13.066 17.080 24.278 hybrid contribution -0.266 -1.146 -0.027 1.177 sum -11.535 11.920 17.053 23.790 Atomic orbital electron populations 1.23114 0.78153 1.04444 1.01222 1.86121 1.21524 1.25850 1.88169 1.19842 0.93082 0.85231 0.97344 1.21648 1.00683 0.92145 1.04770 1.21957 0.95766 0.98163 0.99668 1.22590 0.91432 0.96286 0.99139 1.67447 1.40023 0.97511 1.09810 1.19939 0.87742 0.93391 0.99918 1.20460 1.01574 0.94446 0.96335 1.20218 0.78219 0.80573 0.90465 1.90698 1.50971 1.53876 1.46137 1.46141 1.54498 1.26577 1.09715 1.20967 0.94886 0.96481 0.81654 0.89352 1.22283 0.96349 0.99424 0.99465 1.20889 0.89301 0.95457 0.92214 1.43871 1.02241 1.18116 1.66289 1.19200 0.98391 0.90181 1.29363 0.91663 1.25016 0.98748 0.97711 0.98478 1.70024 1.08703 1.31465 1.45052 0.86265 0.77828 0.85206 0.77335 1.21513 1.20500 1.21891 1.21352 0.92233 0.97201 0.87414 1.22759 0.94759 0.85883 0.95352 0.93849 1.86346 1.43683 1.35186 1.71314 0.92478 0.87799 0.92698 0.84368 0.84577 0.82469 0.87064 0.87155 0.76432 0.92986 0.91237 0.96341 0.92533 0.93664 0.88645 0.95546 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.18 16 2 O -0.30 -3.52 9.55 -19.47 -0.19 -3.71 16 3 C 0.09 1.14 6.67 -39.07 -0.26 0.88 16 4 C -0.17 -1.63 9.14 -39.14 -0.36 -1.99 16 5 C -0.14 -1.22 10.11 -39.46 -0.40 -1.62 16 6 C 0.06 0.67 11.18 -17.53 -0.20 0.47 16 7 N -0.44 -5.98 10.27 -9.35 -0.10 -6.08 16 8 C 0.13 1.77 5.29 -82.42 -0.44 1.34 16 9 C -0.09 -1.09 5.77 -29.04 -0.17 -1.25 16 10 C 0.52 8.35 7.79 -10.99 -0.09 8.27 16 11 O -0.54 -10.86 15.70 5.56 0.09 -10.78 16 12 N -0.72 -11.10 5.05 -53.77 -0.27 -11.37 16 13 C 0.16 3.03 2.20 -67.89 -0.15 2.88 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.13 -2.65 5.51 -26.61 -0.15 -2.79 16 16 C 0.15 3.30 6.52 -3.71 -0.02 3.27 16 17 N -0.58 -14.58 2.94 -172.58 -0.51 -15.09 16 18 C -0.24 -6.59 9.58 -15.06 -0.14 -6.74 16 19 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 20 C 0.00 -0.05 4.91 -17.43 -0.09 -0.13 16 21 N -0.91 -25.89 11.19 55.49 0.62 -25.27 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.15 3.36 4.91 -3.93 -0.02 3.34 16 27 C 0.07 1.37 3.37 -26.83 -0.09 1.28 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 O -0.56 -9.97 12.08 -35.23 -0.43 -10.40 16 30 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.29 7.70 -51.93 -0.40 -0.11 16 33 H 0.14 0.96 6.45 -52.49 -0.34 0.62 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.16 7.52 -51.93 -0.39 0.77 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.40 5.31 8.25 -40.82 -0.34 4.97 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.42 7.61 -51.93 -0.40 1.02 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.37 5.80 9.08 45.56 0.41 6.22 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -34.78 377.50 -7.59 -42.36 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.90 Total: 9.78 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.57 Total: 8.38 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.25 Total: -57.81 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.52 Total: -24.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.78 -7.59 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds