Wall clock time and date at job start Tue Mar 31 2020 19:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35913 * 117.00434 * 2 1 4 4 C 1.39139 * 120.47027 * 359.97438 * 3 2 1 5 5 C 1.38535 * 118.37467 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.22186 * 0.02562 * 5 4 3 7 7 N 1.31854 * 120.88069 * 359.73963 * 6 5 4 8 8 C 1.31834 * 121.78571 * 0.53041 * 7 6 5 9 9 C 1.50699 * 119.66203 * 179.75089 * 8 7 6 10 10 C 1.50693 * 109.47040 * 269.72572 * 9 8 7 11 11 O 1.21282 * 120.00185 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00268 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00737 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.45832 * 34.96852 * 13 12 10 15 15 C 1.53044 * 109.46025 * 275.00114 * 13 12 10 16 16 C 1.53187 * 109.31375 * 178.61038 * 15 13 12 17 17 N 1.46926 * 108.77629 * 54.63309 * 16 15 13 18 18 C 1.36940 * 120.62975 * 126.36813 * 17 16 15 19 19 H 1.07994 * 119.99945 * 332.44875 * 18 17 16 20 20 C 1.38814 * 119.99741 * 152.45397 * 18 17 16 21 21 N 1.31619 * 120.00115 * 342.76707 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 162.77431 * 20 18 17 23 23 H 1.48503 * 109.46486 * 269.99339 * 22 20 18 24 24 H 1.48493 * 109.47319 * 29.99144 * 22 20 18 25 25 H 1.48501 * 109.47322 * 149.99625 * 22 20 18 26 26 C 1.46930 * 118.73855 * 306.64256 * 17 16 15 27 27 C 1.52766 * 109.00665 * 53.30825 * 26 17 16 28 28 H 1.08992 * 109.56465 * 185.54883 * 27 26 17 29 29 O 1.42899 * 109.38498 * 65.51395 * 27 26 17 30 30 H 1.08991 * 109.47149 * 59.99483 * 1 2 3 31 31 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46979 * 299.99774 * 1 2 3 33 33 H 1.07997 * 120.81511 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.39211 * 180.02562 * 5 4 3 35 35 H 1.07992 * 119.55913 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47030 * 149.72258 * 9 8 7 37 37 H 1.09005 * 109.46760 * 29.72520 * 9 8 7 38 38 H 0.97004 * 119.99603 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.49377 * 58.65536 * 15 13 12 40 40 H 1.09002 * 109.51969 * 298.57861 * 15 13 12 41 41 H 1.09004 * 109.58464 * 294.84792 * 16 15 13 42 42 H 1.08993 * 109.70417 * 174.49249 * 16 15 13 43 43 H 0.96998 * 120.00327 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58242 * 173.14315 * 26 17 16 45 45 H 1.08994 * 109.58811 * 293.56959 * 26 17 16 46 46 H 0.96703 * 114.00374 * 60.14330 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2979 2.3841 -0.0005 5 6 1.9717 3.5946 -0.0011 6 6 3.3543 3.5975 -0.0016 7 7 4.0334 2.4674 0.0036 8 6 3.4306 1.2949 -0.0010 9 6 4.2542 0.0329 -0.0004 10 6 4.5283 -0.3887 -1.4210 11 8 4.0977 0.2710 -2.3432 12 7 5.2528 -1.4982 -1.6669 13 6 5.5198 -1.9078 -3.0478 14 1 5.6450 -1.0225 -3.6714 15 6 4.3443 -2.7371 -3.5700 16 6 4.6113 -3.1342 -5.0252 17 7 5.9106 -3.8162 -5.0986 18 6 6.0172 -5.0543 -5.6739 19 1 5.1699 -5.7239 -5.6751 20 6 7.2144 -5.4486 -6.2554 21 7 8.1250 -4.5490 -6.5616 22 14 7.5330 -7.2560 -6.6034 23 1 8.1873 -7.8791 -5.4249 24 1 6.2446 -7.9425 -6.8748 25 1 8.4206 -7.3833 -7.7872 26 6 7.0922 -3.1472 -4.5374 27 6 6.7984 -2.7475 -3.0925 28 1 7.6307 -2.1642 -2.6988 29 8 6.6240 -3.9243 -2.3009 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2185 2.3519 -0.0014 34 1 1.4234 4.5251 -0.0011 35 1 3.8850 4.5380 -0.0016 36 1 3.7076 -0.7574 0.5141 37 1 5.1983 0.2154 0.5130 38 1 5.5982 -2.0252 -0.9293 39 1 3.4299 -2.1463 -3.5160 40 1 4.2336 -3.6351 -2.9622 41 1 4.6316 -2.2412 -5.6499 42 1 3.8261 -3.8055 -5.3729 43 1 8.9615 -4.8244 -6.9683 44 1 7.9431 -3.8280 -4.5609 45 1 7.3190 -2.2553 -5.1214 46 1 7.3972 -4.5049 -2.2837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090519979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:19 Heat of formation + Delta-G solvation = -87.856980 kcal Electronic energy + Delta-G solvation = -29454.352635 eV Core-core repulsion = 25344.089136 eV Total energy + Delta-G solvation = -4110.263499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84738 -40.87723 -39.41870 -39.03451 -36.48449 -35.68962 -34.25201 -33.79815 -32.44702 -31.26720 -30.75772 -29.17172 -28.29736 -26.84802 -24.33862 -23.83831 -23.78323 -23.12996 -21.36698 -20.94136 -19.19725 -19.02782 -18.15511 -18.05840 -17.70751 -17.19512 -16.98742 -16.72195 -16.54785 -16.06857 -15.68387 -15.43549 -15.30051 -15.21824 -14.96517 -14.82358 -14.54755 -14.26695 -14.03417 -13.81030 -13.65674 -13.26891 -13.09065 -12.91855 -12.76253 -12.64923 -12.35237 -12.34677 -12.31614 -12.24279 -12.01461 -11.82319 -11.45248 -11.01776 -10.75211 -10.60297 -10.58381 -10.55985 -9.98869 -9.32355 -8.68674 -7.87375 -5.31821 0.11209 0.31081 1.49145 1.50306 1.59445 1.68378 2.16410 2.26425 2.52129 2.85079 3.24850 3.31019 3.40549 3.63393 3.64993 3.83470 3.85184 3.97407 4.03027 4.10081 4.27915 4.34452 4.35013 4.36510 4.41636 4.48430 4.51199 4.59979 4.70029 4.73476 4.80597 4.90484 4.96192 5.05556 5.05955 5.12682 5.17837 5.42741 5.51609 5.53689 5.55607 5.65204 6.23856 6.36915 6.63115 6.92614 7.01861 7.14546 7.30709 7.82109 8.35692 9.19294 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.002526 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.542327 B =11083.311874 C =11468.338321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.469 5.469 8 C 0.095 3.905 9 C -0.077 4.077 10 C 0.520 3.480 11 O -0.583 6.583 12 N -0.707 5.707 13 C 0.170 3.830 14 H 0.067 0.933 15 C -0.117 4.117 16 C 0.145 3.855 17 N -0.598 5.598 18 C -0.255 4.255 19 H 0.062 0.938 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.298 1.298 26 C 0.150 3.850 27 C 0.092 3.908 28 H 0.069 0.931 29 O -0.559 6.559 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.001 0.999 46 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 12.740 19.759 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.030 3.970 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.112 4.112 7 N -0.179 5.179 8 C -0.045 4.045 9 C -0.117 4.117 10 C 0.307 3.693 11 O -0.463 6.463 12 N -0.358 5.358 13 C 0.065 3.935 14 H 0.085 0.915 15 C -0.157 4.157 16 C 0.019 3.981 17 N -0.321 5.321 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.243 4.243 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.224 1.224 26 C 0.024 3.976 27 C 0.031 3.969 28 H 0.086 0.914 29 O -0.366 6.366 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.198 0.802 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.252 0.748 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.019 0.981 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.490 13.249 19.127 26.408 hybrid contribution 0.021 -1.123 -0.681 1.314 sum -12.470 12.125 18.446 25.353 Atomic orbital electron populations 1.23389 0.76242 1.05763 1.02371 1.86075 1.23605 1.25930 1.88222 1.20017 0.93115 0.86267 0.97635 1.22068 1.02154 0.91636 1.03703 1.22385 0.95313 0.99460 0.97442 1.23137 0.92700 0.96426 0.98897 1.67402 1.41292 0.98349 1.10841 1.20104 0.88733 0.93641 1.01988 1.20433 1.02776 0.94975 0.93564 1.20882 0.76993 0.79727 0.91680 1.90674 1.52632 1.55155 1.47854 1.45929 1.54425 1.26768 1.08702 1.20640 0.94329 0.95382 0.83139 0.91494 1.22041 0.96911 0.99324 0.97406 1.20957 0.88392 0.94798 0.93940 1.44092 1.03394 1.17934 1.66652 1.19445 0.98516 0.91061 1.29466 0.91981 1.25722 0.98521 1.01439 0.98572 1.70173 1.08942 1.33194 1.45953 0.85245 0.77548 0.80520 0.76951 1.20630 1.19908 1.22446 1.21235 0.91086 0.95393 0.89934 1.22405 0.95574 0.86468 0.92451 0.91375 1.86318 1.44683 1.35127 1.70500 0.92238 0.86543 0.90537 0.81568 0.80889 0.80214 0.85219 0.85365 0.74760 0.92799 0.91492 0.97437 0.92519 0.93993 0.90759 0.98117 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 113.37 1.11 1.32 16 2 O -0.33 -7.14 9.55 -92.57 -0.88 -8.02 16 3 C 0.08 1.82 6.67 22.60 0.15 1.97 16 4 C -0.17 -2.95 9.14 22.56 0.21 -2.75 16 5 C -0.13 -1.96 10.11 22.35 0.23 -1.73 16 6 C 0.05 0.91 11.18 84.69 0.95 1.86 16 7 N -0.47 -12.52 10.27 -183.50 -1.88 -14.41 16 8 C 0.09 2.51 5.29 42.67 0.23 2.74 16 9 C -0.08 -1.84 5.77 29.10 0.17 -1.68 16 10 C 0.52 16.43 7.79 87.65 0.68 17.12 16 11 O -0.58 -23.73 15.70 -3.04 -0.05 -23.78 16 12 N -0.71 -21.07 5.05 -442.42 -2.23 -23.30 16 13 C 0.17 6.25 2.20 45.02 0.10 6.35 16 14 H 0.07 2.79 7.58 -2.39 -0.02 2.77 16 15 C -0.12 -4.56 5.51 30.67 0.17 -4.39 16 16 C 0.15 6.58 6.52 86.36 0.56 7.15 16 17 N -0.60 -30.40 2.94 -699.93 -2.06 -32.46 16 18 C -0.25 -14.02 9.58 84.03 0.81 -13.21 16 19 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 20 C -0.05 -2.61 4.91 84.86 0.42 -2.19 16 21 N -0.94 -54.36 11.19 21.65 0.24 -54.12 16 22 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 C 0.15 7.08 4.91 86.22 0.42 7.51 16 27 C 0.09 3.37 3.37 30.53 0.10 3.47 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 O -0.56 -19.01 12.08 -148.98 -1.80 -20.81 16 30 H 0.06 0.71 7.69 -2.39 -0.02 0.69 16 31 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 0.61 7.70 -2.39 -0.02 0.59 16 33 H 0.17 1.78 6.45 -2.91 -0.02 1.76 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.13 2.53 7.52 -2.39 -0.02 2.51 16 37 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.42 10.14 8.25 -92.71 -0.77 9.37 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.66 7.61 -2.39 -0.02 2.65 16 41 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.07 3.82 6.04 -2.39 -0.01 3.80 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.39 11.31 9.08 -74.06 -0.67 10.64 16 Total: -1.00 -76.61 377.50 -0.76 -77.36 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.42 Total: 29.66 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 6.30 Total: 23.52 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -5.94 Total: -124.29 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.73 Total: -52.62 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.61 -0.76 -77.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090519979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.493 kcal (2) G-P(sol) polarization free energy of solvation -76.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds