Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35671 * 117.00242 * 2 1 4 4 C 1.38926 * 119.68856 * 180.25346 * 3 2 1 5 5 C 1.38380 * 119.10939 * 180.27059 * 4 3 2 6 6 C 1.50700 * 120.75393 * 179.75454 * 5 4 3 7 7 C 1.50696 * 109.47194 * 269.72454 * 6 5 4 8 8 O 1.21278 * 120.00202 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99849 * 179.72566 * 7 6 5 10 10 C 1.46502 * 119.99680 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46310 * 324.99882 * 10 9 7 12 12 C 1.53038 * 109.45793 * 84.97457 * 10 9 7 13 13 C 1.53200 * 109.30743 * 181.39747 * 12 10 9 14 14 N 1.46922 * 108.76645 * 305.34209 * 13 12 10 15 15 C 1.36939 * 120.63240 * 233.64183 * 14 13 12 16 16 H 1.07997 * 120.00483 * 151.81193 * 15 14 13 17 17 C 1.38819 * 119.99897 * 331.81220 * 15 14 13 18 18 N 1.31623 * 119.99667 * 343.07450 * 17 15 14 19 19 Si 1.86791 * 120.00154 * 163.08014 * 17 15 14 20 20 H 1.48497 * 109.46983 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47289 * 119.99800 * 19 17 15 22 22 H 1.48497 * 109.47141 * 239.99807 * 19 17 15 23 23 C 1.46929 * 118.73868 * 53.61681 * 14 13 12 24 24 C 1.53047 * 109.45669 * 205.02811 * 10 9 7 25 25 H 1.09000 * 109.49702 * 298.59433 * 24 10 9 26 26 O 1.42899 * 109.49685 * 58.66342 * 24 10 9 27 27 C 1.38821 * 118.48528 * 359.48113 * 5 4 3 28 28 C 1.38042 * 119.29220 * 0.27595 * 27 5 4 29 29 N 1.31963 * 120.83719 * 359.97438 * 28 27 5 30 30 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46836 * 299.99708 * 1 2 3 32 32 H 1.08997 * 109.47294 * 60.00261 * 1 2 3 33 33 H 1.08001 * 120.44270 * 0.03065 * 4 3 2 34 34 H 1.08999 * 109.46932 * 149.72079 * 6 5 4 35 35 H 1.09005 * 109.46953 * 29.72094 * 6 5 4 36 36 H 0.96995 * 120.00030 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.50055 * 301.33131 * 12 10 9 38 38 H 1.08992 * 109.50165 * 61.43591 * 12 10 9 39 39 H 1.09007 * 109.58261 * 185.55981 * 13 12 10 40 40 H 1.09000 * 109.71776 * 65.20273 * 13 12 10 41 41 H 0.96997 * 119.99645 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58183 * 186.60326 * 23 14 13 43 43 H 1.09005 * 109.69739 * 66.25133 * 23 14 13 44 44 H 0.96696 * 113.99505 * 179.97438 * 26 24 10 45 45 H 1.08007 * 120.35367 * 180.29513 * 27 5 4 46 46 H 1.08005 * 119.58230 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 -0.0053 5 6 4.0485 2.5131 0.0004 6 6 5.5512 2.6269 0.0005 7 6 6.0521 2.6648 1.4213 8 8 5.2663 2.6048 2.3431 9 7 7.3738 2.7593 1.6676 10 6 7.8606 2.7967 3.0488 11 1 7.1478 3.3382 3.6706 12 6 8.0131 1.3675 3.5745 13 6 8.4888 1.4112 5.0301 14 7 9.7169 2.2146 5.1021 15 6 10.8500 1.7067 5.6793 16 1 11.8214 2.0512 5.3567 17 6 10.7502 0.7490 6.6793 18 7 9.6065 0.5677 7.3050 19 14 12.2389 -0.2822 7.1369 20 1 13.3938 0.1132 6.2913 21 1 12.5733 -0.0615 8.5668 22 1 11.9330 -1.7184 6.9161 23 6 9.7062 3.5731 4.5424 24 6 9.2165 3.5052 3.0925 25 1 9.9363 2.9506 2.4905 26 8 9.0797 4.8293 2.5727 27 6 3.2505 3.6490 0.0003 28 6 1.8771 3.5096 0.0003 29 7 1.3186 2.3140 -0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0229 0.3695 -0.0100 34 1 5.8463 3.5418 -0.5134 35 1 5.9807 1.7668 -0.5133 36 1 8.0026 2.8032 0.9303 37 1 7.0522 0.8558 3.5213 38 1 8.7445 0.8330 2.9685 39 1 8.6936 0.3987 5.3781 40 1 7.7190 1.8637 5.6552 41 1 9.5366 -0.1017 8.0034 42 1 10.7142 3.9869 4.5687 43 1 9.0362 4.2053 5.1252 44 1 9.9021 5.3378 2.5706 45 1 3.6993 4.6314 0.0000 46 1 1.2518 4.3902 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090571255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = -64.073808 kcal Electronic energy + Delta-G solvation = -28817.655474 eV Core-core repulsion = 24708.423291 eV Total energy + Delta-G solvation = -4109.232183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.85359 -39.75206 -38.27852 -37.72830 -35.43789 -34.36706 -33.87330 -31.98776 -30.89306 -30.22867 -28.99493 -28.23295 -27.20619 -25.09173 -23.60856 -22.73072 -22.27898 -21.63140 -20.24403 -19.50579 -18.06360 -17.33366 -17.26366 -16.82232 -16.56050 -16.11692 -16.09892 -15.83361 -15.17909 -14.85189 -14.48057 -14.26539 -14.13148 -13.94498 -13.61811 -13.41587 -13.20367 -13.00631 -12.80549 -12.50624 -12.30205 -12.23263 -11.96552 -11.69943 -11.59975 -11.36468 -11.13105 -10.91294 -10.69771 -10.34677 -10.27510 -10.06974 -9.96086 -9.82394 -9.78817 -9.68494 -9.37212 -8.78063 -8.63162 -8.48022 -6.79372 -5.87109 -3.31942 1.02288 1.11517 2.78160 2.92164 3.29637 3.33314 3.40152 3.42132 3.72400 4.15469 4.34138 4.37544 4.49127 4.73341 4.94461 4.95080 4.99362 5.08618 5.12313 5.22735 5.26253 5.27636 5.30827 5.43674 5.46208 5.52717 5.59522 5.73868 5.74628 5.94226 6.08907 6.14264 6.25580 6.29322 6.45400 6.50108 6.64395 6.74489 6.83935 7.08914 7.26612 7.58556 7.69646 7.70938 7.70995 7.87902 8.35409 8.40715 9.10788 9.73099 10.29058 11.21426 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.002462 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.350155 B =11369.611986 C =12537.203968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.175 4.175 5 C 0.016 3.984 6 C -0.106 4.106 7 C 0.514 3.486 8 O -0.532 6.532 9 N -0.716 5.716 10 C 0.163 3.837 11 H 0.087 0.913 12 C -0.146 4.146 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.572 6.572 27 C -0.195 4.195 28 C 0.138 3.862 29 N -0.543 5.543 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.396 0.604 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.374 0.626 45 H 0.136 0.864 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 4.591 -19.082 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.196 4.196 5 C 0.008 3.992 6 C -0.146 4.146 7 C 0.299 3.701 8 O -0.409 6.409 9 N -0.366 5.366 10 C 0.060 3.940 11 H 0.105 0.895 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.214 1.214 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.376 6.376 27 C -0.215 4.215 28 C -0.017 4.017 29 N -0.268 5.268 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.220 0.780 45 H 0.154 0.846 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.730 3.890 -18.324 22.648 hybrid contribution 2.279 -0.170 0.103 2.287 sum -10.451 3.720 -18.221 21.332 Atomic orbital electron populations 1.22834 0.77345 1.02825 1.02370 1.86237 1.22830 1.24631 1.87924 1.19729 0.89203 0.84661 0.92282 1.20864 0.92069 0.98950 1.07702 1.19450 0.94581 0.92344 0.92789 1.20726 0.91866 1.05767 0.96235 1.20217 0.82655 0.76794 0.90469 1.90757 1.55170 1.48929 1.46015 1.46072 1.06737 1.74336 1.09416 1.21002 0.94316 0.97032 0.81688 0.89491 1.22595 1.00809 0.94103 1.01151 1.20826 0.87020 0.98605 0.89065 1.44050 1.10543 1.09010 1.67609 1.19191 0.85469 1.20478 1.13756 0.91499 1.25097 0.96995 1.01562 0.95787 1.70045 1.24740 1.35060 1.24337 0.86205 0.82220 0.80262 0.77941 1.20221 1.21620 1.21446 1.21524 0.99093 0.89245 0.90851 1.22779 0.95948 0.82280 0.97076 0.92580 1.86472 1.37899 1.26988 1.86230 1.21825 0.94780 0.99283 1.05661 1.22303 0.92660 0.93571 0.93157 1.67274 1.41011 0.98871 1.19597 0.88726 0.92296 0.92437 0.84253 0.87296 0.87430 0.77025 0.91940 0.92333 0.88910 0.95811 0.93455 0.92178 0.95352 0.77984 0.84610 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.87 10.48 -18.72 -0.20 -4.06 16 3 C 0.32 4.24 7.49 -17.12 -0.13 4.11 16 4 C -0.18 -2.19 9.74 -39.27 -0.38 -2.58 16 5 C 0.02 0.19 4.41 -104.35 -0.46 -0.27 16 6 C -0.11 -1.02 5.88 -29.04 -0.17 -1.19 16 7 C 0.51 7.36 7.79 -10.99 -0.09 7.28 16 8 O -0.53 -10.17 15.70 5.56 0.09 -10.08 16 9 N -0.72 -9.89 4.92 -53.76 -0.26 -10.15 16 10 C 0.16 2.86 2.11 -67.89 -0.14 2.71 16 11 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 12 C -0.15 -2.84 5.65 -26.61 -0.15 -2.99 16 13 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 14 N -0.59 -14.25 2.99 -172.31 -0.52 -14.77 16 15 C -0.26 -6.87 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 18 N -0.90 -25.76 11.20 55.49 0.62 -25.14 16 19 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.12 2.41 6.14 -3.71 -0.02 2.39 16 24 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 O -0.57 -8.11 13.16 -35.23 -0.46 -8.57 16 27 C -0.20 -2.09 9.81 -39.44 -0.39 -2.48 16 28 C 0.14 1.49 11.17 -17.57 -0.20 1.29 16 29 N -0.54 -6.91 9.22 -13.33 -0.12 -7.04 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.11 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.11 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.40 4.28 8.60 -40.82 -0.35 3.93 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.37 3.74 9.08 45.56 0.41 4.16 16 45 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -34.55 382.98 -7.62 -42.17 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.09 Total: 7.73 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -1.41 Total: 8.02 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.28 Total: -57.09 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.57 Total: -22.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.55 -7.62 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090571255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.909 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds