Wall clock time and date at job start Tue Mar 31 2020 18:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35671 * 117.00242 * 2 1 4 4 C 1.38926 * 119.68856 * 180.25346 * 3 2 1 5 5 C 1.38380 * 119.10939 * 180.27059 * 4 3 2 6 6 C 1.50700 * 120.75393 * 179.75454 * 5 4 3 7 7 C 1.50696 * 109.47194 * 269.72454 * 6 5 4 8 8 O 1.21278 * 120.00202 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99849 * 179.72566 * 7 6 5 10 10 C 1.46502 * 119.99680 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46310 * 324.99882 * 10 9 7 12 12 C 1.53038 * 109.45793 * 84.97457 * 10 9 7 13 13 C 1.53200 * 109.30743 * 181.39747 * 12 10 9 14 14 N 1.46922 * 108.76645 * 305.34209 * 13 12 10 15 15 C 1.36939 * 120.63240 * 233.64183 * 14 13 12 16 16 H 1.07997 * 120.00483 * 151.81193 * 15 14 13 17 17 C 1.38819 * 119.99897 * 331.81220 * 15 14 13 18 18 N 1.31623 * 119.99667 * 343.07450 * 17 15 14 19 19 Si 1.86791 * 120.00154 * 163.08014 * 17 15 14 20 20 H 1.48497 * 109.46983 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47289 * 119.99800 * 19 17 15 22 22 H 1.48497 * 109.47141 * 239.99807 * 19 17 15 23 23 C 1.46929 * 118.73868 * 53.61681 * 14 13 12 24 24 C 1.53047 * 109.45669 * 205.02811 * 10 9 7 25 25 H 1.09000 * 109.49702 * 298.59433 * 24 10 9 26 26 O 1.42899 * 109.49685 * 58.66342 * 24 10 9 27 27 C 1.38821 * 118.48528 * 359.48113 * 5 4 3 28 28 C 1.38042 * 119.29220 * 0.27595 * 27 5 4 29 29 N 1.31963 * 120.83719 * 359.97438 * 28 27 5 30 30 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46836 * 299.99708 * 1 2 3 32 32 H 1.08997 * 109.47294 * 60.00261 * 1 2 3 33 33 H 1.08001 * 120.44270 * 0.03065 * 4 3 2 34 34 H 1.08999 * 109.46932 * 149.72079 * 6 5 4 35 35 H 1.09005 * 109.46953 * 29.72094 * 6 5 4 36 36 H 0.96995 * 120.00030 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.50055 * 301.33131 * 12 10 9 38 38 H 1.08992 * 109.50165 * 61.43591 * 12 10 9 39 39 H 1.09007 * 109.58261 * 185.55981 * 13 12 10 40 40 H 1.09000 * 109.71776 * 65.20273 * 13 12 10 41 41 H 0.96997 * 119.99645 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58183 * 186.60326 * 23 14 13 43 43 H 1.09005 * 109.69739 * 66.25133 * 23 14 13 44 44 H 0.96696 * 113.99505 * 179.97438 * 26 24 10 45 45 H 1.08007 * 120.35367 * 180.29513 * 27 5 4 46 46 H 1.08005 * 119.58230 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2739 -0.0053 5 6 4.0485 2.5131 0.0004 6 6 5.5512 2.6269 0.0005 7 6 6.0521 2.6648 1.4213 8 8 5.2663 2.6048 2.3431 9 7 7.3738 2.7593 1.6676 10 6 7.8606 2.7967 3.0488 11 1 7.1478 3.3382 3.6706 12 6 8.0131 1.3675 3.5745 13 6 8.4888 1.4112 5.0301 14 7 9.7169 2.2146 5.1021 15 6 10.8500 1.7067 5.6793 16 1 11.8214 2.0512 5.3567 17 6 10.7502 0.7490 6.6793 18 7 9.6065 0.5677 7.3050 19 14 12.2389 -0.2822 7.1369 20 1 13.3938 0.1132 6.2913 21 1 12.5733 -0.0615 8.5668 22 1 11.9330 -1.7184 6.9161 23 6 9.7062 3.5731 4.5424 24 6 9.2165 3.5052 3.0925 25 1 9.9363 2.9506 2.4905 26 8 9.0797 4.8293 2.5727 27 6 3.2505 3.6490 0.0003 28 6 1.8771 3.5096 0.0003 29 7 1.3186 2.3140 -0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0229 0.3695 -0.0100 34 1 5.8463 3.5418 -0.5134 35 1 5.9807 1.7668 -0.5133 36 1 8.0026 2.8032 0.9303 37 1 7.0522 0.8558 3.5213 38 1 8.7445 0.8330 2.9685 39 1 8.6936 0.3987 5.3781 40 1 7.7190 1.8637 5.6552 41 1 9.5366 -0.1017 8.0034 42 1 10.7142 3.9869 4.5687 43 1 9.0362 4.2053 5.1252 44 1 9.9021 5.3378 2.5706 45 1 3.6993 4.6314 0.0000 46 1 1.2518 4.3902 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090571255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:12 Heat of formation + Delta-G solvation = -92.610848 kcal Electronic energy + Delta-G solvation = -28818.892932 eV Core-core repulsion = 24708.423291 eV Total energy + Delta-G solvation = -4110.469642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74322 -40.96336 -39.51692 -38.76743 -36.96141 -35.74431 -34.79469 -33.76908 -31.89702 -31.67620 -30.38507 -29.42497 -28.02075 -26.85982 -24.49474 -24.17422 -23.73200 -22.90641 -21.46802 -21.03610 -19.09146 -18.80270 -18.14593 -18.00808 -17.96162 -17.30252 -16.96375 -16.90903 -16.68463 -16.16116 -15.71186 -15.57733 -15.34820 -15.17007 -14.93390 -14.83225 -14.53610 -14.20764 -13.87022 -13.80191 -13.62376 -13.30409 -13.21889 -12.96126 -12.85468 -12.76138 -12.48907 -12.36588 -12.16859 -12.08852 -12.04342 -11.88749 -11.38586 -11.13393 -11.01126 -10.68286 -10.58634 -10.51047 -10.00142 -9.48589 -8.77141 -7.91055 -5.39176 0.16692 0.24676 1.47282 1.49278 1.59793 1.68915 2.09296 2.24382 2.48615 2.82393 3.14282 3.26644 3.34961 3.57911 3.63189 3.86511 3.98079 4.03771 4.08258 4.15464 4.19221 4.24310 4.40210 4.40885 4.43125 4.53285 4.55036 4.58796 4.70708 4.74056 4.79441 4.84999 4.91849 4.98081 5.03318 5.12865 5.32407 5.37025 5.47537 5.52581 5.59926 5.65163 6.24284 6.33246 6.62869 6.84932 6.90762 7.08908 7.33971 7.77293 8.30008 9.16349 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.002462 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.350155 B =11369.611986 C =12537.203968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.297 3.703 4 C -0.193 4.193 5 C 0.005 3.995 6 C -0.093 4.093 7 C 0.511 3.489 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.171 3.829 11 H 0.051 0.949 12 C -0.128 4.128 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.263 4.263 16 H 0.079 0.921 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.295 1.295 22 H -0.292 1.292 23 C 0.116 3.884 24 C 0.104 3.896 25 H 0.077 0.923 26 O -0.569 6.569 27 C -0.198 4.198 28 C 0.129 3.871 29 N -0.559 5.559 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.417 0.583 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.061 0.939 40 H -0.013 1.013 41 H 0.250 0.750 42 H 0.076 0.924 43 H 0.009 0.991 44 H 0.396 0.604 45 H 0.160 0.840 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 5.726 -22.002 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.234 6.234 3 C 0.119 3.881 4 C -0.213 4.213 5 C -0.003 4.003 6 C -0.132 4.132 7 C 0.299 3.701 8 O -0.466 6.466 9 N -0.353 5.353 10 C 0.066 3.934 11 H 0.069 0.931 12 C -0.169 4.169 13 C 0.053 3.947 14 N -0.328 5.328 15 C -0.393 4.393 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.799 3.201 20 H -0.183 1.183 21 H -0.222 1.222 22 H -0.219 1.219 23 C -0.011 4.011 24 C 0.043 3.957 25 H 0.094 0.906 26 O -0.376 6.376 27 C -0.218 4.218 28 C -0.026 4.026 29 N -0.283 5.283 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.254 0.746 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.005 0.995 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.246 0.754 45 H 0.178 0.822 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.154 5.067 -21.317 24.586 hybrid contribution 1.742 -0.402 1.028 2.063 sum -9.412 4.665 -20.288 22.847 Atomic orbital electron populations 1.23022 0.75940 1.04505 1.02145 1.86207 1.24374 1.24753 1.88039 1.20017 0.89831 0.85061 0.93227 1.21093 0.92097 0.99829 1.08325 1.19759 0.95833 0.92185 0.92487 1.20766 0.90433 1.09011 0.92973 1.21051 0.82056 0.75066 0.91961 1.90751 1.56453 1.51215 1.48214 1.45809 1.07299 1.73923 1.08262 1.20564 0.94390 0.95116 0.83346 0.93077 1.22302 1.00391 0.95950 0.98218 1.20531 0.86339 0.96454 0.91355 1.44263 1.09886 1.10823 1.67857 1.19609 0.86548 1.20013 1.13083 0.90386 1.25919 0.99560 1.03122 0.96236 1.70219 1.27014 1.35885 1.25255 0.85155 0.79514 0.78158 0.77288 1.18326 1.22235 1.21870 1.21718 0.99822 0.86773 0.92785 1.22275 0.95067 0.83715 0.94662 0.90558 1.86443 1.39779 1.25961 1.85454 1.22183 0.94812 1.00193 1.04567 1.22890 0.93536 0.93858 0.92306 1.67304 1.41514 0.99418 1.20102 0.86141 0.93083 0.92034 0.83867 0.83571 0.84437 0.74609 0.92765 0.90912 0.92100 0.99475 0.94093 0.90576 0.97320 0.75373 0.82210 0.79509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.38 113.37 1.18 1.87 16 2 O -0.33 -8.29 10.48 -89.88 -0.94 -9.23 16 3 C 0.30 7.92 7.49 84.79 0.63 8.55 16 4 C -0.19 -4.74 9.74 22.47 0.22 -4.52 16 5 C 0.01 0.12 4.41 -19.69 -0.09 0.03 16 6 C -0.09 -1.46 5.88 29.10 0.17 -1.29 16 7 C 0.51 13.62 7.79 87.66 0.68 14.30 16 8 O -0.59 -22.38 15.70 -3.02 -0.05 -22.43 16 9 N -0.70 -17.51 4.92 -442.40 -2.18 -19.69 16 10 C 0.17 5.82 2.11 45.02 0.10 5.92 16 11 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.13 -5.00 5.65 30.67 0.17 -4.83 16 13 C 0.18 8.92 5.30 86.37 0.46 9.38 16 14 N -0.60 -29.48 2.99 -699.07 -2.09 -31.57 16 15 C -0.26 -13.85 9.58 84.03 0.81 -13.04 16 16 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 17 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 18 N -0.94 -55.86 11.20 21.65 0.24 -55.62 16 19 Si 0.97 43.78 29.59 68.60 2.03 45.81 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 C 0.12 4.51 6.14 86.36 0.53 5.04 16 24 C 0.10 3.15 3.14 30.67 0.10 3.24 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 O -0.57 -14.09 13.16 -148.98 -1.96 -16.05 16 27 C -0.20 -3.81 9.81 22.36 0.22 -3.59 16 28 C 0.13 2.61 11.17 84.63 0.95 3.55 16 29 N -0.56 -14.05 9.22 -308.95 -2.85 -16.90 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.15 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.14 1.40 8.10 -2.38 -0.02 1.38 16 36 H 0.42 7.16 8.60 -92.71 -0.80 6.36 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 3.39 6.06 -2.38 -0.01 3.38 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 43 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 44 H 0.40 6.22 9.08 -74.06 -0.67 5.54 16 45 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -79.34 382.98 -1.71 -81.05 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.46 Total: 22.50 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.54 Total: 22.13 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.87 Total: -123.78 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -2.95 Total: -47.71 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -79.34 -1.71 -81.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090571255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.560 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds