Wall clock time and date at job start Tue Mar 31 2020 19:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35502 * 116.99989 * 2 1 4 4 C 1.39210 * 120.89911 * 359.97438 * 3 2 1 5 5 C 1.37900 * 119.38735 * 180.02562 * 4 3 2 6 6 N 1.32084 * 121.29647 * 0.02562 * 5 4 3 7 7 C 1.32189 * 121.97298 * 359.97438 * 6 5 4 8 8 O 1.35424 * 119.77219 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00377 * 359.97408 * 8 7 6 10 10 C 1.40291 * 120.44586 * 0.02562 * 7 6 5 11 11 C 1.47230 * 120.64821 * 180.27823 * 10 7 6 12 12 O 1.21629 * 119.99475 * 269.71127 * 11 10 7 13 13 N 1.34770 * 120.00270 * 89.72287 * 11 10 7 14 14 C 1.46500 * 120.00075 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47241 * 179.97438 * 14 13 11 16 16 C 1.53779 * 113.61578 * 274.13542 * 15 14 13 17 17 C 1.53946 * 87.01966 * 220.04939 * 16 15 14 18 18 N 1.46502 * 113.53666 * 270.81112 * 17 16 15 19 19 C 1.36937 * 119.99814 * 252.49443 * 18 17 16 20 20 H 1.07995 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.38822 * 119.99566 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99675 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00123 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47469 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47032 * 209.99666 * 23 21 19 26 26 H 1.48503 * 109.47033 * 329.99710 * 23 21 19 27 27 C 1.53782 * 87.11467 * 25.36497 * 17 16 15 28 28 H 1.09005 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47083 * 299.99536 * 1 2 3 30 30 H 1.09004 * 109.47169 * 60.00324 * 1 2 3 31 31 H 1.07999 * 120.30673 * 0.04616 * 4 3 2 32 32 H 1.07999 * 119.35538 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.47283 * 300.00284 * 9 8 7 34 34 H 1.08998 * 109.47238 * 60.00320 * 9 8 7 35 35 H 1.09007 * 109.47447 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00374 * 359.97438 * 13 11 10 37 37 H 1.08997 * 109.47189 * 299.99561 * 14 13 11 38 38 H 1.09001 * 109.47151 * 59.99456 * 14 13 11 39 39 H 1.08994 * 112.84735 * 45.33743 * 15 14 13 40 40 H 1.09001 * 113.61417 * 334.56974 * 16 15 14 41 41 H 1.09002 * 113.61192 * 105.46688 * 16 15 14 42 42 H 1.09007 * 113.74507 * 139.94781 * 17 16 15 43 43 H 0.96998 * 120.00124 * 72.50064 * 18 17 16 44 44 H 0.97003 * 120.00315 * 180.02562 * 22 21 19 45 45 H 1.09005 * 113.61398 * 220.09242 * 27 17 16 46 46 H 1.08993 * 113.61293 * 89.18679 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9626 3.5984 -0.0011 6 7 3.2819 3.6625 -0.0016 7 6 4.0355 2.5765 -0.0011 8 8 5.3846 2.6942 -0.0011 9 6 5.9203 4.0189 -0.0022 10 6 3.4471 1.3029 -0.0006 11 6 4.2822 0.0904 0.0061 12 8 4.6274 -0.4160 -1.0445 13 7 4.6639 -0.4586 1.1762 14 6 5.4944 -1.6654 1.1828 15 6 5.7837 -2.0776 2.6276 16 6 7.0037 -1.3678 3.2382 17 6 7.3609 -2.7159 3.8900 18 7 6.7509 -2.9083 5.2081 19 6 7.5241 -2.8436 6.3364 20 1 8.5836 -2.6510 6.2547 21 6 6.9459 -3.0254 7.5853 22 7 7.6890 -2.9626 8.6698 23 14 5.1135 -3.3591 7.7266 24 1 4.8716 -4.8234 7.6766 25 1 4.6097 -2.8180 9.0145 26 1 4.4023 -2.7012 6.6011 27 6 6.5816 -3.3869 2.7466 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2249 2.3528 -0.0002 32 1 1.3882 4.5129 -0.0019 33 1 5.5802 4.5477 -0.8927 34 1 5.5802 4.5492 0.8873 35 1 7.0093 3.9706 -0.0026 36 1 4.3888 -0.0546 2.0142 37 1 4.9673 -2.4719 0.6732 38 1 6.4336 -1.4630 0.6681 39 1 4.8979 -2.0469 3.2619 40 1 7.7308 -1.0345 2.4977 41 1 6.7423 -0.5902 3.9560 42 1 8.4279 -2.9388 3.8809 43 1 5.7994 -3.0817 5.2815 44 1 7.2852 -3.0900 9.5425 45 1 5.9800 -4.2371 3.0683 46 1 7.1931 -3.6066 1.8716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091139030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:52 Heat of formation + Delta-G solvation = -61.041643 kcal Electronic energy + Delta-G solvation = -28789.862417 eV Core-core repulsion = 24680.761718 eV Total energy + Delta-G solvation = -4109.100698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22716 -40.67129 -40.27831 -39.74995 -38.38540 -36.08552 -34.98285 -33.22812 -32.56126 -31.85343 -28.99792 -28.92613 -27.77114 -26.47532 -25.87767 -25.03009 -23.59560 -23.15183 -21.92720 -20.32156 -19.97252 -19.57670 -18.86098 -18.63377 -17.65718 -17.58018 -16.99353 -16.70515 -16.67617 -16.31165 -16.19580 -15.99515 -15.71684 -15.25402 -15.06024 -14.76206 -14.70235 -14.60620 -14.30240 -14.03965 -13.80657 -13.37480 -13.10820 -13.02822 -12.83297 -12.70642 -12.64907 -12.49822 -12.20237 -12.19017 -11.89681 -11.71644 -11.62021 -11.37056 -11.00409 -10.90035 -10.68059 -10.13137 -10.11259 -9.74548 -9.30412 -8.03124 -5.36784 -0.19288 0.14288 1.36509 1.40769 1.44082 1.47619 1.58475 2.11559 2.39718 2.47597 2.55204 3.26116 3.27479 3.50362 3.52270 3.71070 3.73010 3.85112 3.91060 3.98414 4.15693 4.25925 4.29376 4.35533 4.35743 4.36446 4.40891 4.54625 4.68676 4.70189 4.72937 4.75143 4.86240 4.92292 4.95341 5.07471 5.09121 5.22650 5.30236 5.45307 5.52477 5.80413 6.01637 6.07519 6.22290 6.41032 6.68810 7.07203 7.09431 7.83945 8.02867 9.18483 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002759 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.327105 B =10144.945689 C =10578.488430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.227 3.773 4 C -0.287 4.287 5 C 0.193 3.807 6 N -0.570 5.570 7 C 0.375 3.625 8 O -0.320 6.320 9 C 0.037 3.963 10 C -0.272 4.272 11 C 0.588 3.412 12 O -0.578 6.578 13 N -0.705 5.705 14 C 0.139 3.861 15 C -0.105 4.105 16 C -0.155 4.155 17 C 0.148 3.852 18 N -0.734 5.734 19 C -0.233 4.233 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.251 1.251 27 C -0.131 4.131 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.210 0.790 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.408 0.592 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.070 0.930 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 14.382 -21.997 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.171 3.829 4 C -0.308 4.308 5 C 0.039 3.961 6 N -0.298 5.298 7 C 0.196 3.804 8 O -0.226 6.226 9 C -0.057 4.057 10 C -0.279 4.279 11 C 0.374 3.626 12 O -0.458 6.458 13 N -0.355 5.355 14 C 0.016 3.984 15 C -0.124 4.124 16 C -0.196 4.196 17 C 0.038 3.962 18 N -0.375 5.375 19 C -0.364 4.364 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.175 1.175 27 C -0.170 4.170 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.203 0.797 32 H 0.227 0.773 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.447 14.376 -22.588 31.958 hybrid contribution -1.231 -0.556 1.058 1.716 sum -18.679 13.820 -21.530 31.677 Atomic orbital electron populations 1.23604 0.74350 1.06337 1.03710 1.86056 1.25188 1.25959 1.86338 1.19063 0.89259 0.86494 0.88040 1.22380 1.03506 0.90994 1.13897 1.23105 0.87692 0.99160 0.86176 1.67544 1.09308 1.29398 1.23514 1.19472 0.84820 0.87755 0.88336 1.86216 1.15781 1.34092 1.86539 1.23166 0.99750 0.79700 1.03096 1.18979 0.92486 0.92842 1.23617 1.17754 0.78542 0.82731 0.83564 1.90742 1.57787 1.64241 1.33033 1.45948 1.52338 1.29033 1.08173 1.21373 0.94508 0.85999 0.96517 1.22574 0.97768 0.97827 0.94231 1.23742 0.97737 0.98463 0.99642 1.21363 0.96200 0.95020 0.83602 1.42448 1.07013 1.86381 1.01705 1.19078 0.92503 1.39587 0.85199 0.92514 1.25515 1.02594 1.02656 0.94829 1.69884 1.36903 1.58785 0.97892 0.85406 0.80704 0.78300 0.77347 1.20389 1.22259 1.17539 1.23350 0.98672 0.96006 0.98956 0.86464 0.89936 0.90152 0.79673 0.77328 0.91495 0.91379 0.86561 0.75713 0.91458 0.91518 0.89391 0.89194 0.93083 0.92195 0.79992 0.93311 0.91145 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.33 -6.38 10.03 -88.03 -0.88 -7.26 16 3 C 0.23 4.59 6.74 23.09 0.16 4.74 16 4 C -0.29 -3.45 9.09 22.42 0.20 -3.24 16 5 C 0.19 2.36 11.15 84.57 0.94 3.30 16 6 N -0.57 -11.15 9.20 -308.27 -2.84 -13.99 16 7 C 0.38 9.34 7.51 85.14 0.64 9.97 16 8 O -0.32 -8.22 9.93 -87.19 -0.87 -9.09 16 9 C 0.04 0.63 10.38 113.37 1.18 1.81 16 10 C -0.27 -7.17 5.67 -19.83 -0.11 -7.28 16 11 C 0.59 18.33 6.42 86.61 0.56 18.88 16 12 O -0.58 -22.26 17.11 -4.12 -0.07 -22.33 16 13 N -0.71 -19.10 5.55 -466.56 -2.59 -21.69 16 14 C 0.14 3.68 5.50 86.38 0.47 4.16 16 15 C -0.11 -2.88 3.62 -10.27 -0.04 -2.92 16 16 C -0.16 -4.92 7.44 31.18 0.23 -4.69 16 17 C 0.15 5.46 4.57 45.57 0.21 5.67 16 18 N -0.73 -33.78 5.11 -320.16 -1.64 -35.41 16 19 C -0.23 -13.26 10.45 84.04 0.88 -12.38 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 21 C -0.06 -3.80 5.50 84.87 0.47 -3.34 16 22 N -0.98 -63.22 13.97 21.65 0.30 -62.91 16 23 Si 0.96 45.04 27.74 68.60 1.90 46.95 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 27 C -0.13 -3.70 7.39 31.12 0.23 -3.47 16 28 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 0.36 7.71 -2.39 -0.02 0.34 16 30 H 0.08 0.37 7.71 -2.38 -0.02 0.35 16 31 H 0.19 0.70 6.45 -2.91 -0.02 0.68 16 32 H 0.21 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.07 1.04 8.10 -2.38 -0.02 1.02 16 34 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.41 9.91 8.46 -92.71 -0.78 9.13 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.83 7.87 -2.39 -0.02 1.81 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.56 7.92 -2.39 -0.02 2.54 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 2.33 8.10 -2.38 -0.02 2.32 16 43 H 0.37 16.06 5.76 -92.71 -0.53 15.53 16 44 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -82.17 388.19 0.09 -82.08 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.36 Total: 31.20 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.13 Total: 12.45 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -6.76 Total: -134.01 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.82 Total: -38.67 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.95 kcal Total: -82.17 0.09 -82.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091139030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.038 kcal (2) G-P(sol) polarization free energy of solvation -82.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds