Wall clock time and date at job start Tue Mar 31 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48535 * 110.99744 * 2 1 4 4 C 1.54937 * 103.23023 * 200.27780 * 3 2 1 5 5 C 1.54597 * 102.92074 * 37.41351 * 4 3 2 6 6 H 1.08998 * 110.39259 * 96.99993 * 5 4 3 7 7 C 1.50700 * 110.31245 * 219.12923 * 5 4 3 8 8 O 1.21286 * 119.99686 * 357.16791 * 7 5 4 9 9 N 1.34771 * 120.00136 * 177.16798 * 7 5 4 10 10 C 1.48149 * 127.84028 * 179.97438 * 9 7 5 11 11 C 1.54385 * 104.62025 * 219.61165 * 10 9 7 12 12 H 1.09002 * 110.34590 * 95.00255 * 11 10 9 13 13 C 1.52997 * 110.34047 * 217.15480 * 11 10 9 14 14 F 1.39898 * 109.47286 * 57.12394 * 13 11 10 15 15 F 1.39901 * 109.47318 * 177.11942 * 13 11 10 16 16 F 1.39898 * 109.47377 * 297.12372 * 13 11 10 17 17 C 1.54281 * 105.05132 * 336.07790 * 11 10 9 18 18 H 1.09002 * 110.34601 * 241.18584 * 17 11 10 19 19 N 1.46499 * 110.34619 * 118.92810 * 17 11 10 20 20 C 1.36937 * 120.00454 * 155.00118 * 19 17 11 21 21 H 1.07999 * 119.99610 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00109 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99974 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99834 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46943 * 89.99866 * 24 22 20 26 26 H 1.48497 * 109.46947 * 209.99661 * 24 22 20 27 27 H 1.48499 * 109.47315 * 329.99939 * 24 22 20 28 28 C 1.48146 * 127.83864 * 0.02792 * 9 7 5 29 29 C 1.47906 * 111.00292 * 242.60576 * 2 1 3 30 30 H 1.09008 * 109.46684 * 177.39406 * 1 2 3 31 31 H 1.08999 * 109.47910 * 297.39308 * 1 2 3 32 32 H 1.08996 * 109.47244 * 57.40196 * 1 2 3 33 33 H 1.09002 * 110.66989 * 318.71492 * 3 2 1 34 34 H 1.09002 * 110.66752 * 81.84734 * 3 2 1 35 35 H 1.08999 * 110.72644 * 279.05958 * 4 3 2 36 36 H 1.08999 * 110.72758 * 155.77266 * 4 3 2 37 37 H 1.08997 * 110.40593 * 100.81982 * 10 9 7 38 38 H 1.09004 * 110.40225 * 338.39223 * 10 9 7 39 39 H 0.97000 * 119.99601 * 334.99921 * 19 17 11 40 40 H 0.96995 * 120.00098 * 180.02562 * 23 22 20 41 41 H 1.09001 * 110.40493 * 259.17469 * 28 9 7 42 42 H 1.08996 * 110.41002 * 21.48927 * 28 9 7 43 43 H 1.08994 * 109.91660 * 26.48693 * 29 2 1 44 44 H 1.08997 * 110.07588 * 265.28467 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2108 -0.5227 5 6 3.2983 0.1055 -1.5930 6 1 3.2142 0.5472 -2.5859 7 6 4.4717 -0.8385 -1.5390 8 8 5.3808 -0.6322 -0.7631 9 7 4.5110 -1.9120 -2.3529 10 6 5.5700 -2.9439 -2.4458 11 6 5.6990 -3.2349 -3.9565 12 1 6.4993 -2.6357 -4.3909 13 6 5.9635 -4.7236 -4.1905 14 9 4.9355 -5.4764 -3.6129 15 9 6.0119 -4.9782 -5.5653 16 9 7.1849 -5.0776 -3.6074 17 6 4.3380 -2.8306 -4.5601 18 1 3.8570 -3.6929 -5.0217 19 7 4.5149 -1.7583 -5.5425 20 6 3.5973 -1.5898 -6.5449 21 1 2.7431 -2.2472 -6.6111 22 6 3.7653 -0.5741 -7.4761 23 7 4.8062 0.2273 -7.3952 24 14 2.5140 -0.3448 -8.8439 25 1 1.4493 0.5856 -8.3899 26 1 3.1873 0.2197 -10.0411 27 1 1.9107 -1.6573 -9.1881 28 6 3.5055 -2.3273 -3.3585 29 6 1.9991 -0.6353 -1.2260 30 1 -0.3633 -1.0267 -0.0467 31 1 -0.3635 0.4728 0.9124 32 1 -0.3633 0.5536 -0.8657 33 1 1.4236 2.0205 -0.6729 34 1 2.0040 1.7977 1.0096 35 1 4.1115 0.8838 0.2787 36 1 3.8122 2.1354 -0.9715 37 1 5.2713 -3.8444 -1.9093 38 1 6.5106 -2.5596 -2.0511 39 1 5.2820 -1.1676 -5.4828 40 1 4.9233 0.9373 -8.0456 41 1 2.8840 -3.1316 -2.9647 42 1 2.8873 -1.4786 -3.6508 43 1 1.2759 -0.5403 -2.0359 44 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099341535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:55 Heat of formation + Delta-G solvation = -159.987717 kcal Electronic energy + Delta-G solvation = -30990.703757 eV Core-core repulsion = 26335.455695 eV Total energy + Delta-G solvation = -4655.248062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.91996 -47.43124 -47.33374 -40.30960 -38.56719 -37.29249 -34.12896 -32.58057 -31.87112 -30.67515 -29.08963 -27.66789 -26.20622 -25.37473 -24.32003 -22.64657 -21.37213 -21.27290 -20.36731 -19.11502 -18.32936 -18.02020 -17.80841 -17.01391 -16.72510 -16.07262 -15.95270 -15.13449 -14.83832 -14.71904 -14.34585 -14.28485 -14.23103 -13.82639 -13.77997 -13.66813 -13.50525 -13.39818 -13.36508 -13.31305 -13.10487 -12.40272 -12.16345 -11.93606 -11.91278 -11.67548 -11.64965 -11.49503 -11.32132 -11.19374 -10.96998 -10.93193 -10.87933 -10.73086 -10.24674 -9.92002 -9.63188 -9.24569 -8.58121 -8.57511 -7.23186 -5.96984 -3.29679 2.74905 2.86392 3.15926 3.31139 3.37887 3.39425 3.89404 3.97033 4.06874 4.19898 4.43426 4.47624 4.53497 4.75092 4.87312 4.96860 5.18714 5.19109 5.22406 5.24758 5.30713 5.37744 5.43497 5.46629 5.51321 5.59027 5.69450 5.70517 5.77945 5.79392 5.91192 5.98245 5.99468 6.09281 6.19167 6.25729 6.50071 6.71269 6.86137 7.51254 7.71716 8.18116 8.33078 9.31170 9.80122 10.15591 11.24381 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.005217 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.684832 B = 5365.460400 C = 7807.407803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.116 4.116 6 H 0.110 0.890 7 C 0.553 3.447 8 O -0.546 6.546 9 N -0.612 5.612 10 C 0.118 3.882 11 C -0.166 4.166 12 H 0.128 0.872 13 C 0.464 3.536 14 F -0.184 7.184 15 F -0.173 7.173 16 F -0.187 7.187 17 C 0.179 3.821 18 H 0.078 0.922 19 N -0.709 5.709 20 C -0.254 4.254 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.926 5.926 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.073 3.927 29 C 0.048 3.952 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -4.027 12.060 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.147 4.147 5 C -0.138 4.138 6 H 0.128 0.872 7 C 0.342 3.658 8 O -0.423 6.423 9 N -0.345 5.345 10 C -0.006 4.006 11 C -0.188 4.188 12 H 0.146 0.854 13 C 0.409 3.591 14 F -0.165 7.165 15 F -0.154 7.154 16 F -0.169 7.169 17 C 0.065 3.935 18 H 0.096 0.904 19 N -0.349 5.349 20 C -0.384 4.384 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.053 4.053 29 C -0.080 4.080 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.904 -4.124 12.838 14.038 hybrid contribution -0.671 0.488 -1.780 1.964 sum -4.575 -3.636 11.058 12.507 Atomic orbital electron populations 1.22523 0.87777 1.02118 1.00924 1.64756 1.08122 1.15206 1.36554 1.23294 0.95143 0.89735 1.01244 1.22468 0.96634 0.97344 0.98225 1.22133 0.93265 0.95987 1.02426 0.87198 1.19928 0.87540 0.79634 0.78672 1.90660 1.39129 1.73548 1.38984 1.48768 1.22621 1.24512 1.38569 1.22099 0.93658 0.92232 0.92610 1.23902 1.05197 0.90038 0.99662 0.85389 1.20305 0.73662 0.90854 0.74252 1.93152 1.59552 1.79250 1.84580 1.93235 1.96046 1.95238 1.30928 1.93169 1.45627 1.93638 1.84440 1.21079 0.89228 0.93569 0.89581 0.90381 1.42421 1.29424 1.33769 1.29325 1.19199 1.02928 1.12271 1.04040 0.90735 1.24772 0.97964 0.98055 0.99242 1.69655 1.29148 1.20485 1.37925 0.86187 0.80412 0.77864 0.81660 1.21585 1.21629 1.20507 1.23664 0.92167 1.00723 0.88796 1.22852 0.94332 0.99473 0.91389 0.91281 0.91283 0.95176 0.93482 0.89773 0.88828 0.90442 0.90377 0.88908 0.77774 0.93173 0.91539 0.88769 0.92493 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.06 0.56 0.71 16 2 N -0.52 -6.20 5.55 -238.71 -1.33 -7.53 16 3 C 0.03 0.37 6.56 -1.90 -0.01 0.35 16 4 C -0.11 -1.39 6.39 -24.87 -0.16 -1.54 16 5 C -0.12 -1.63 2.65 -90.41 -0.24 -1.87 16 6 H 0.11 1.61 8.00 -51.93 -0.42 1.19 16 7 C 0.55 9.08 7.07 -10.99 -0.08 9.00 16 8 O -0.55 -10.42 15.71 5.55 0.09 -10.33 16 9 N -0.61 -9.36 3.24 -169.17 -0.55 -9.91 16 10 C 0.12 1.66 6.36 -2.41 -0.02 1.65 16 11 C -0.17 -2.50 2.83 -89.22 -0.25 -2.75 16 12 H 0.13 2.03 7.67 -51.93 -0.40 1.63 16 13 C 0.46 6.71 2.52 37.16 0.09 6.81 16 14 F -0.18 -2.54 16.05 2.25 0.04 -2.51 16 15 F -0.17 -2.86 17.00 2.25 0.04 -2.82 16 16 F -0.19 -2.62 17.14 2.25 0.04 -2.58 16 17 C 0.18 3.05 3.02 -66.42 -0.20 2.85 16 18 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 19 N -0.71 -15.61 5.12 -51.96 -0.27 -15.87 16 20 C -0.25 -6.29 9.96 -15.06 -0.15 -6.44 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 24 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.07 1.08 5.56 -2.29 -0.01 1.07 16 29 C 0.05 0.59 5.19 -2.75 -0.01 0.58 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.28 8.00 -51.93 -0.42 -0.14 16 33 H 0.05 0.48 7.96 -51.93 -0.41 0.07 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.35 6.91 -51.93 -0.36 0.99 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.00 7.27 -51.93 -0.38 0.62 16 38 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 39 H 0.39 9.34 7.55 -40.82 -0.31 9.03 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.51 6.93 -51.93 -0.36 1.15 16 43 H 0.06 0.67 7.73 -51.93 -0.40 0.27 16 44 H 0.08 1.07 7.18 -51.93 -0.37 0.69 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -28.96 364.02 -7.60 -36.55 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.27 Total: 8.72 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.57 Total: 10.24 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -1.41 Total: -58.61 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.11 Total: -7.90 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.96 -7.60 -36.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099341535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.433 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds