Wall clock time and date at job start Tue Mar 31 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48535 * 110.99744 * 2 1 4 4 C 1.54937 * 103.23023 * 200.27780 * 3 2 1 5 5 C 1.54597 * 102.92074 * 37.41351 * 4 3 2 6 6 H 1.08998 * 110.39259 * 96.99993 * 5 4 3 7 7 C 1.50700 * 110.31245 * 219.12923 * 5 4 3 8 8 O 1.21286 * 119.99686 * 357.16791 * 7 5 4 9 9 N 1.34771 * 120.00136 * 177.16798 * 7 5 4 10 10 C 1.48149 * 127.84028 * 179.97438 * 9 7 5 11 11 C 1.54385 * 104.62025 * 219.61165 * 10 9 7 12 12 H 1.09002 * 110.34590 * 95.00255 * 11 10 9 13 13 C 1.52997 * 110.34047 * 217.15480 * 11 10 9 14 14 F 1.39898 * 109.47286 * 57.12394 * 13 11 10 15 15 F 1.39901 * 109.47318 * 177.11942 * 13 11 10 16 16 F 1.39898 * 109.47377 * 297.12372 * 13 11 10 17 17 C 1.54281 * 105.05132 * 336.07790 * 11 10 9 18 18 H 1.09002 * 110.34601 * 241.18584 * 17 11 10 19 19 N 1.46499 * 110.34619 * 118.92810 * 17 11 10 20 20 C 1.36937 * 120.00454 * 155.00118 * 19 17 11 21 21 H 1.07999 * 119.99610 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00109 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99974 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99834 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46943 * 89.99866 * 24 22 20 26 26 H 1.48497 * 109.46947 * 209.99661 * 24 22 20 27 27 H 1.48499 * 109.47315 * 329.99939 * 24 22 20 28 28 C 1.48146 * 127.83864 * 0.02792 * 9 7 5 29 29 C 1.47906 * 111.00292 * 242.60576 * 2 1 3 30 30 H 1.09008 * 109.46684 * 177.39406 * 1 2 3 31 31 H 1.08999 * 109.47910 * 297.39308 * 1 2 3 32 32 H 1.08996 * 109.47244 * 57.40196 * 1 2 3 33 33 H 1.09002 * 110.66989 * 318.71492 * 3 2 1 34 34 H 1.09002 * 110.66752 * 81.84734 * 3 2 1 35 35 H 1.08999 * 110.72644 * 279.05958 * 4 3 2 36 36 H 1.08999 * 110.72758 * 155.77266 * 4 3 2 37 37 H 1.08997 * 110.40593 * 100.81982 * 10 9 7 38 38 H 1.09004 * 110.40225 * 338.39223 * 10 9 7 39 39 H 0.97000 * 119.99601 * 334.99921 * 19 17 11 40 40 H 0.96995 * 120.00098 * 180.02562 * 23 22 20 41 41 H 1.09001 * 110.40493 * 259.17469 * 28 9 7 42 42 H 1.08996 * 110.41002 * 21.48927 * 28 9 7 43 43 H 1.08994 * 109.91660 * 26.48693 * 29 2 1 44 44 H 1.08997 * 110.07588 * 265.28467 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2108 -0.5227 5 6 3.2983 0.1055 -1.5930 6 1 3.2142 0.5472 -2.5859 7 6 4.4717 -0.8385 -1.5390 8 8 5.3808 -0.6322 -0.7631 9 7 4.5110 -1.9120 -2.3529 10 6 5.5700 -2.9439 -2.4458 11 6 5.6990 -3.2349 -3.9565 12 1 6.4993 -2.6357 -4.3909 13 6 5.9635 -4.7236 -4.1905 14 9 4.9355 -5.4764 -3.6129 15 9 6.0119 -4.9782 -5.5653 16 9 7.1849 -5.0776 -3.6074 17 6 4.3380 -2.8306 -4.5601 18 1 3.8570 -3.6929 -5.0217 19 7 4.5149 -1.7583 -5.5425 20 6 3.5973 -1.5898 -6.5449 21 1 2.7431 -2.2472 -6.6111 22 6 3.7653 -0.5741 -7.4761 23 7 4.8062 0.2273 -7.3952 24 14 2.5140 -0.3448 -8.8439 25 1 1.4493 0.5856 -8.3899 26 1 3.1873 0.2197 -10.0411 27 1 1.9107 -1.6573 -9.1881 28 6 3.5055 -2.3273 -3.3585 29 6 1.9991 -0.6353 -1.2260 30 1 -0.3633 -1.0267 -0.0467 31 1 -0.3635 0.4728 0.9124 32 1 -0.3633 0.5536 -0.8657 33 1 1.4236 2.0205 -0.6729 34 1 2.0040 1.7977 1.0096 35 1 4.1115 0.8838 0.2787 36 1 3.8122 2.1354 -0.9715 37 1 5.2713 -3.8444 -1.9093 38 1 6.5106 -2.5596 -2.0511 39 1 5.2820 -1.1676 -5.4828 40 1 4.9233 0.9373 -8.0456 41 1 2.8840 -3.1316 -2.9647 42 1 2.8873 -1.4786 -3.6508 43 1 1.2759 -0.5403 -2.0359 44 1 2.2117 -1.6880 -1.0399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099341535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:55 Heat of formation + Delta-G solvation = -179.118420 kcal Electronic energy + Delta-G solvation = -30991.533327 eV Core-core repulsion = 26335.455695 eV Total energy + Delta-G solvation = -4656.077632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.12322 -48.59710 -48.57559 -41.52317 -39.69342 -38.56476 -35.83524 -33.82094 -33.12720 -32.22130 -30.10147 -29.14772 -27.23024 -26.40890 -26.00978 -24.03022 -22.50416 -22.21340 -21.68829 -20.35892 -19.58099 -19.40432 -19.17552 -18.31202 -18.13481 -17.30315 -16.98742 -16.65823 -16.10647 -15.82425 -15.65942 -15.47368 -15.30545 -15.20461 -15.08810 -15.00967 -14.83813 -14.73703 -14.60709 -14.55650 -14.04312 -13.60973 -13.37652 -13.23605 -13.04925 -12.93299 -12.86814 -12.67051 -12.57187 -12.51161 -12.39615 -12.23079 -12.12375 -12.06742 -11.78389 -11.75433 -11.11596 -10.88996 -9.93001 -9.44629 -9.05213 -7.95341 -5.26052 1.47744 1.50337 1.51922 1.59227 1.62248 1.94041 2.53667 2.76137 2.82494 2.98045 3.03169 3.36560 3.37251 3.50612 3.63600 3.70580 3.82725 3.87716 4.00361 4.20328 4.23449 4.28524 4.34875 4.49357 4.52524 4.53645 4.56163 4.65120 4.71940 4.76397 4.81048 4.90290 4.93900 4.99305 5.03809 5.16823 5.25072 5.54633 5.81464 6.03576 6.23098 6.44463 7.04533 7.32175 7.98526 8.23329 9.27237 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.005217 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.684832 B = 5365.460400 C = 7807.407803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.537 5.537 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.116 4.116 6 H 0.101 0.899 7 C 0.547 3.453 8 O -0.577 6.577 9 N -0.612 5.612 10 C 0.119 3.881 11 C -0.158 4.158 12 H 0.117 0.883 13 C 0.473 3.527 14 F -0.175 7.175 15 F -0.185 7.185 16 F -0.182 7.182 17 C 0.173 3.827 18 H 0.083 0.917 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.086 0.914 22 C -0.065 4.065 23 N -0.966 5.966 24 Si 0.966 3.034 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.268 1.268 28 C 0.084 3.916 29 C 0.055 3.945 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -5.111 12.966 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.261 5.261 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.137 4.137 6 H 0.119 0.881 7 C 0.338 3.662 8 O -0.458 6.458 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.179 4.179 12 H 0.135 0.865 13 C 0.418 3.582 14 F -0.157 7.157 15 F -0.167 7.167 16 F -0.163 7.163 17 C 0.062 3.938 18 H 0.101 0.899 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.258 4.258 23 N -0.616 5.616 24 Si 0.796 3.204 25 H -0.214 1.214 26 H -0.230 1.230 27 H -0.192 1.192 28 C -0.041 4.041 29 C -0.073 4.073 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.738 -5.271 13.770 15.821 hybrid contribution -0.083 0.732 -1.987 2.119 sum -5.821 -4.539 11.782 13.904 Atomic orbital electron populations 1.22584 0.86210 1.02780 1.01753 1.64771 1.09672 1.15579 1.36100 1.23292 0.93669 0.89675 1.02148 1.22444 0.97786 0.97057 0.97358 1.22144 0.93282 0.96002 1.02319 0.88086 1.20370 0.87753 0.79823 0.78280 1.90641 1.40395 1.74295 1.40421 1.48823 1.22934 1.24486 1.38173 1.22187 0.93512 0.92763 0.91923 1.23723 1.03673 0.90449 1.00069 0.86502 1.20075 0.73994 0.90391 0.73739 1.93170 1.59185 1.78986 1.84332 1.93216 1.96133 1.95275 1.32032 1.93185 1.45348 1.93534 1.84247 1.21274 0.90723 0.92315 0.89486 0.89924 1.42533 1.28595 1.34766 1.30091 1.19587 1.02829 1.11038 1.03551 0.89630 1.25461 0.99760 0.98749 1.01830 1.69804 1.31318 1.21548 1.38909 0.85258 0.78367 0.78010 0.78811 1.21415 1.23034 1.19232 1.23506 0.91647 1.01264 0.87722 1.22773 0.93492 0.99047 0.92026 0.90701 0.90000 0.94825 0.92487 0.88451 0.90654 0.90025 0.88154 0.89219 0.79330 0.94113 0.88271 0.89694 0.91750 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.40 127.69 1.20 1.44 16 2 N -0.54 -11.66 5.55 -909.15 -5.05 -16.70 16 3 C 0.04 0.80 6.56 86.65 0.57 1.37 16 4 C -0.11 -2.71 6.39 31.80 0.20 -2.51 16 5 C -0.12 -3.17 2.65 -10.66 -0.03 -3.20 16 6 H 0.10 2.94 8.00 -2.39 -0.02 2.93 16 7 C 0.55 17.74 7.07 87.66 0.62 18.36 16 8 O -0.58 -22.14 15.71 -3.05 -0.05 -22.19 16 9 N -0.61 -17.98 3.24 -807.53 -2.62 -20.60 16 10 C 0.12 3.19 6.36 86.53 0.55 3.74 16 11 C -0.16 -4.55 2.83 -9.89 -0.03 -4.58 16 12 H 0.12 3.71 7.67 -2.39 -0.02 3.69 16 13 C 0.47 12.85 2.52 71.98 0.18 13.03 16 14 F -0.18 -4.37 16.05 44.97 0.72 -3.65 16 15 F -0.19 -5.87 17.00 44.97 0.76 -5.11 16 16 F -0.18 -4.76 17.14 44.97 0.77 -3.99 16 17 C 0.17 5.66 3.02 45.97 0.14 5.80 16 18 H 0.08 2.67 7.34 -2.39 -0.02 2.66 16 19 N -0.72 -31.49 5.12 -318.30 -1.63 -33.12 16 20 C -0.24 -11.66 9.96 84.03 0.84 -10.82 16 21 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.07 -3.43 5.50 84.86 0.47 -2.96 16 23 N -0.97 -55.45 13.06 21.65 0.28 -55.17 16 24 Si 0.97 42.90 29.55 68.60 2.03 44.92 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 C 0.08 2.34 5.56 86.61 0.48 2.82 16 29 C 0.05 1.27 5.19 86.45 0.45 1.72 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 0.53 8.00 -2.39 -0.02 0.51 16 33 H 0.06 1.05 7.96 -2.39 -0.02 1.03 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.18 6.91 -2.39 -0.02 2.16 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 2.28 7.27 -2.39 -0.02 2.26 16 38 H 0.09 2.51 7.88 -2.39 -0.02 2.49 16 39 H 0.37 18.31 7.55 -92.71 -0.70 17.61 16 40 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.59 6.93 -2.39 -0.02 2.57 16 43 H 0.06 1.39 7.73 -2.39 -0.02 1.37 16 44 H 0.08 1.88 7.18 -2.39 -0.02 1.86 16 Total: -1.00 -61.75 364.02 1.20 -60.55 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.33 Total: 30.83 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 5.64 Total: 24.22 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -9.01 Total: -125.59 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 2.26 Total: -12.75 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -61.75 1.20 -60.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099341535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.569 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds