Wall clock time and date at job start Tue Mar 31 2020 18:26:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 O 1.20924 * 124.56226 * 2 1
4 4 C 1.34176 * 112.19103 * 179.97438 * 3 2 1
5 5 C 1.48201 * 126.38750 * 180.02562 * 4 3 2
6 6 O 1.21492 * 120.00224 * 179.97438 * 5 4 3
7 7 N 1.34782 * 119.99939 * 359.97367 * 5 4 3
8 8 C 1.48117 * 127.84215 * 0.02871 * 7 5 4
9 9 C 1.54329 * 104.68937 * 219.72425 * 8 7 5
10 10 H 1.08999 * 111.84660 * 214.55907 * 9 8 7
11 11 C 1.54158 * 108.86255 * 90.49018 * 9 8 7
12 12 C 1.54843 * 104.33175 * 271.22316 * 11 9 8
13 13 C 1.54841 * 102.73477 * 321.81821 * 12 11 9
14 14 C 1.54920 * 104.83548 * 336.04754 * 9 8 7
15 15 C 1.52998 * 111.92575 * 237.67519 * 14 9 8
16 16 N 1.46497 * 109.47323 * 179.97438 * 15 14 9
17 17 C 1.36942 * 119.99917 * 179.97438 * 16 15 14
18 18 H 1.08004 * 119.99576 * 0.02562 * 17 16 15
19 19 C 1.38808 * 119.99912 * 179.97438 * 17 16 15
20 20 N 1.31617 * 120.00005 * 0.02562 * 19 17 16
21 21 Si 1.86798 * 119.99835 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.46928 * 60.00859 * 21 19 17
23 23 H 1.48504 * 109.47216 * 180.02562 * 21 19 17
24 24 H 1.48500 * 109.47513 * 300.00426 * 21 19 17
25 25 C 1.48118 * 127.84348 * 179.70244 * 7 5 4
26 26 C 1.36322 * 107.22843 * 0.02562 * 4 3 2
27 27 C 1.34826 * 124.57093 * 179.69569 * 2 1 3
28 28 O 1.21982 * 127.14516 * 0.02562 * 27 2 1
29 29 H 1.09002 * 109.47391 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.46813 * 240.02463 * 1 2 3
31 31 H 1.09004 * 109.47041 * 120.02590 * 1 2 3
32 32 H 1.09004 * 110.38881 * 338.52269 * 8 7 5
33 33 H 1.08991 * 110.39534 * 100.80330 * 8 7 5
34 34 H 1.08998 * 110.46649 * 29.93832 * 11 9 8
35 35 H 1.09001 * 110.46097 * 152.51277 * 11 9 8
36 36 H 1.09003 * 110.75657 * 80.12806 * 12 11 9
37 37 H 1.09000 * 110.76263 * 203.32276 * 12 11 9
38 38 H 1.09002 * 110.46261 * 156.89501 * 13 12 11
39 39 H 1.08991 * 110.46764 * 279.35149 * 13 12 11
40 40 H 1.09008 * 109.46700 * 300.00071 * 15 14 9
41 41 H 1.08997 * 109.47040 * 59.99277 * 15 14 9
42 42 H 0.96999 * 119.99818 * 359.97438 * 16 15 14
43 43 H 0.97001 * 119.99642 * 179.97438 * 20 19 17
44 44 H 1.08994 * 110.39389 * 259.08724 * 25 7 5
45 45 H 1.08997 * 110.38838 * 21.48012 * 25 7 5
46 46 H 1.07998 * 127.99758 * 179.97438 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 8 2.1510 0.9958 0.0000
4 6 3.4616 0.7084 0.0006
5 6 4.5760 1.6853 0.0013
6 8 5.7264 1.2947 0.0022
7 7 4.3132 3.0073 0.0008
8 6 2.9888 3.6705 0.0003
9 6 3.1533 4.8722 -0.9540
10 1 2.5672 5.7317 -0.6287
11 6 2.7774 4.4296 -2.3821
12 6 4.1023 3.8946 -2.9788
13 6 5.1544 4.8779 -2.4100
14 6 4.6727 5.1744 -0.9531
15 6 4.9693 6.6105 -0.5167
16 7 6.4165 6.8374 -0.5345
17 6 6.9224 8.0593 -0.1794
18 1 6.2544 8.8557 0.1142
19 6 8.2937 8.2741 -0.1957
20 7 9.1076 7.3035 -0.5530
21 14 8.9838 9.9408 0.2894
22 1 8.5885 10.2526 1.6865
23 1 10.4651 9.9116 0.1884
24 1 8.4465 10.9833 -0.6215
25 6 5.2833 4.1266 0.0075
26 6 3.5770 -0.6500 0.0004
27 6 2.2300 -1.1102 0.0059
28 8 1.8473 -2.2684 0.0116
29 1 -0.3634 1.0277 -0.0005
30 1 -0.3633 -0.5135 0.8902
31 1 -0.3633 -0.5143 -0.8898
32 1 2.2236 2.9903 -0.3738
33 1 2.7347 4.0121 1.0036
34 1 2.0270 3.6396 -2.3511
35 1 2.4143 5.2787 -2.9610
36 1 4.2979 2.8786 -2.6358
37 1 4.0800 3.9356 -4.0678
38 1 6.1415 4.4157 -2.3994
39 1 5.1716 5.7977 -2.9945
40 1 4.4836 7.3059 -1.2014
41 1 4.5893 6.7693 0.4925
42 1 7.0163 6.1220 -0.7978
43 1 10.0658 7.4537 -0.5647
44 1 5.3800 4.5394 1.0116
45 1 6.2526 3.7912 -0.3613
46 1 4.4813 -1.2404 0.0003
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001112328334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:26:29
Heat of formation + Delta-G solvation = 33.676671 kcal
Electronic energy + Delta-G solvation = -30128.296243 eV
Core-core repulsion = 26023.302839 eV
Total energy + Delta-G solvation = -4104.993404 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-45.38320 -40.81858 -38.80482 -38.40986 -35.01029 -34.56474 -34.26883 -32.51826
-31.77105 -30.08931 -29.65830 -28.29249 -26.00944 -25.57481 -24.17959 -23.80947
-22.81406 -22.14669 -20.21331 -20.09594 -18.96159 -18.70005 -18.33797 -17.44753
-16.93856 -16.38509 -16.22593 -15.46387 -15.06588 -14.91754 -14.51665 -14.47226
-14.08645 -14.03102 -13.80504 -13.72361 -13.52787 -13.34644 -13.27338 -13.21283
-13.06024 -12.69811 -12.21073 -11.69179 -11.25283 -10.95936 -10.85293 -10.83715
-10.77818 -10.64855 -10.57990 -10.49916 -10.33642 -10.30764 -10.28616 -10.02987
-9.69880 -8.93549 -8.87563 -8.79027 -6.96487 -5.79009 -3.08500 0.28536
1.26047 2.32345 2.40918 2.78251 3.02887 3.42090 3.46735 3.48036
4.04783 4.31125 4.34040 4.49057 4.53610 4.62208 4.67732 4.69761
4.75201 4.96427 5.11437 5.17164 5.20954 5.24580 5.43716 5.45467
5.51012 5.54064 5.58824 5.66058 5.70755 5.77472 5.80918 5.91983
6.01791 6.09904 6.13702 6.23198 6.35446 6.43982 6.54183 6.65172
6.69944 7.15387 7.29402 7.59584 7.66312 7.72989 8.39211 9.50838
10.07036 10.41547 11.43389
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.022951 B = 0.002790 C = 0.002659
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.703482 B =10034.013532 C =10527.612392
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.109 3.891
2 N -0.456 5.456
3 O -0.003 6.003
4 C 0.042 3.958
5 C 0.615 3.385
6 O -0.495 6.495
7 N -0.602 5.602
8 C 0.100 3.900
9 C -0.099 4.099
10 H 0.098 0.902
11 C -0.114 4.114
12 C -0.124 4.124
13 C -0.104 4.104
14 C -0.073 4.073
15 C 0.175 3.825
16 N -0.730 5.730
17 C -0.243 4.243
18 H 0.069 0.931
19 C -0.011 4.011
20 N -0.931 5.931
21 Si 0.906 3.094
22 H -0.286 1.286
23 H -0.291 1.291
24 H -0.286 1.286
25 C 0.122 3.878
26 C -0.241 4.241
27 C 0.482 3.518
28 O -0.524 6.524
29 H 0.098 0.902
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.084 0.916
33 H 0.079 0.921
34 H 0.061 0.939
35 H 0.069 0.931
36 H 0.058 0.942
37 H 0.063 0.937
38 H 0.069 0.931
39 H 0.074 0.926
40 H 0.026 0.974
41 H 0.022 0.978
42 H 0.385 0.615
43 H 0.256 0.744
44 H 0.085 0.915
45 H 0.093 0.907
46 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.055 -10.892 -0.984 22.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.027 4.027
2 N -0.220 5.220
3 O -0.014 6.014
4 C -0.016 4.016
5 C 0.399 3.601
6 O -0.369 6.369
7 N -0.334 5.334
8 C -0.023 4.023
9 C -0.118 4.118
10 H 0.116 0.884
11 C -0.152 4.152
12 C -0.161 4.161
13 C -0.142 4.142
14 C -0.074 4.074
15 C 0.047 3.953
16 N -0.375 5.375
17 C -0.374 4.374
18 H 0.087 0.913
19 C -0.207 4.207
20 N -0.579 5.579
21 Si 0.737 3.263
22 H -0.213 1.213
23 H -0.217 1.217
24 H -0.213 1.213
25 C 0.001 3.999
26 C -0.266 4.266
27 C 0.280 3.720
28 O -0.404 6.404
29 H 0.117 0.883
30 H 0.108 0.892
31 H 0.108 0.892
32 H 0.102 0.898
33 H 0.097 0.903
34 H 0.079 0.921
35 H 0.088 0.912
36 H 0.077 0.923
37 H 0.082 0.918
38 H 0.087 0.913
39 H 0.092 0.908
40 H 0.043 0.957
41 H 0.040 0.960
42 H 0.219 0.781
43 H 0.066 0.934
44 H 0.103 0.897
45 H 0.111 0.889
46 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -19.896 -11.459 -0.924 22.979
hybrid contribution 0.634 0.712 0.236 0.983
sum -19.262 -10.747 -0.688 22.068
Atomic orbital electron populations
1.22119 0.70728 1.05166 1.04736 1.46125 1.05911 1.00037 1.69956
1.84128 1.15373 1.20714 1.81178 1.23487 0.81464 0.96233 1.00407
1.16219 0.85371 0.79880 0.78644 1.90931 1.18164 1.77560 1.50290
1.48889 1.10556 1.04034 1.69930 1.22780 0.84521 0.94428 1.00527
1.22715 0.96821 0.96948 0.95333 0.88398 1.22394 0.97419 1.00267
0.95075 1.22460 0.95087 0.98923 0.99651 1.22693 0.98311 0.99154
0.94026 1.22731 0.93007 0.96086 0.95621 1.20558 0.87657 0.89765
0.97314 1.42317 0.99963 1.13474 1.81722 1.19140 0.90504 0.89916
1.37857 0.91268 1.24730 0.96073 0.97658 1.02252 1.69642 1.02718
1.31483 1.54049 0.86289 0.77958 0.83747 0.78275 1.21294 1.21711
1.21311 1.22683 0.92775 0.83728 1.00689 1.23333 0.99732 0.93298
1.10200 1.18317 0.86660 0.85498 0.81515 1.90967 1.79083 1.15894
1.54487 0.88318 0.89233 0.89221 0.89751 0.90266 0.92053 0.91186
0.92343 0.91788 0.91267 0.90761 0.95673 0.96040 0.78093 0.93385
0.89672 0.88876 0.78961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 0.53 11.18 59.85 0.67 1.20 16
2 N -0.46 -4.24 3.68 -69.77 -0.26 -4.49 16
3 O 0.00 -0.03 8.13 16.82 0.14 0.11 16
4 C 0.04 0.48 7.08 -36.18 -0.26 0.22 16
5 C 0.61 8.30 7.94 -12.16 -0.10 8.20 16
6 O -0.49 -8.34 17.16 5.37 0.09 -8.25 16
7 N -0.60 -7.44 2.59 -170.18 -0.44 -7.88 16
8 C 0.10 0.94 6.15 -2.46 -0.02 0.92 16
9 C -0.10 -1.01 3.56 -88.31 -0.31 -1.32 16
10 H 0.10 0.90 7.88 -51.93 -0.41 0.49 16
11 C -0.11 -1.08 6.27 -25.15 -0.16 -1.24 16
12 C -0.12 -1.43 6.54 -24.79 -0.16 -1.60 16
13 C -0.10 -1.50 5.48 -24.00 -0.13 -1.63 16
14 C -0.07 -1.02 0.69 -150.83 -0.10 -1.12 16
15 C 0.18 3.09 5.20 -4.04 -0.02 3.07 16
16 N -0.73 -17.05 5.27 -59.91 -0.32 -17.37 16
17 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16
18 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16
19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
20 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16
21 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16
22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
25 C 0.12 1.79 5.66 -2.26 -0.01 1.78 16
26 C -0.24 -2.84 10.94 -38.69 -0.42 -3.26 16
27 C 0.48 5.98 8.02 -14.66 -0.12 5.86 16
28 O -0.52 -8.09 17.92 4.93 0.09 -8.00 16
29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16
30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.08 0.67 4.87 -51.93 -0.25 0.42 16
33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.06 0.50 7.44 -51.93 -0.39 0.11 16
35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.06 0.73 7.76 -51.93 -0.40 0.32 16
37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
38 H 0.07 1.12 7.54 -51.93 -0.39 0.73 16
39 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16
40 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16
41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
42 H 0.39 9.56 7.17 -40.82 -0.29 9.27 16
43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
44 H 0.09 1.31 7.98 -51.93 -0.41 0.90 16
45 H 0.09 1.59 7.26 -51.93 -0.38 1.21 16
46 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16
LS Contribution 374.12 15.07 5.64 5.64
Total: -1.00 -33.47 374.12 -7.44 -40.91
By element:
Atomic # 1 Polarization: 11.83 SS G_CDS: -6.69 Total: 5.14 kcal
Atomic # 6 Polarization: 5.46 SS G_CDS: -1.39 Total: 4.07 kcal
Atomic # 7 Polarization: -56.16 SS G_CDS: -0.29 Total: -56.45 kcal
Atomic # 8 Polarization: -16.46 SS G_CDS: 0.32 Total: -16.15 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -33.47 -7.44 -40.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112328334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.591 kcal
(2) G-P(sol) polarization free energy of solvation -33.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.677 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds