Wall clock time and date at job start Tue Mar 31 2020 18:26:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 O 1.20924 * 124.56226 * 2 1
4 4 C 1.34176 * 112.19103 * 179.97438 * 3 2 1
5 5 C 1.48201 * 126.38750 * 180.02562 * 4 3 2
6 6 O 1.21492 * 120.00224 * 179.97438 * 5 4 3
7 7 N 1.34782 * 119.99939 * 359.97367 * 5 4 3
8 8 C 1.48117 * 127.84215 * 0.02871 * 7 5 4
9 9 C 1.54329 * 104.68937 * 219.72425 * 8 7 5
10 10 H 1.08999 * 111.84660 * 214.55907 * 9 8 7
11 11 C 1.54158 * 108.86255 * 90.49018 * 9 8 7
12 12 C 1.54843 * 104.33175 * 271.22316 * 11 9 8
13 13 C 1.54841 * 102.73477 * 321.81821 * 12 11 9
14 14 C 1.54920 * 104.83548 * 336.04754 * 9 8 7
15 15 C 1.52998 * 111.92575 * 237.67519 * 14 9 8
16 16 N 1.46497 * 109.47323 * 179.97438 * 15 14 9
17 17 C 1.36942 * 119.99917 * 179.97438 * 16 15 14
18 18 H 1.08004 * 119.99576 * 0.02562 * 17 16 15
19 19 C 1.38808 * 119.99912 * 179.97438 * 17 16 15
20 20 N 1.31617 * 120.00005 * 0.02562 * 19 17 16
21 21 Si 1.86798 * 119.99835 * 180.02562 * 19 17 16
22 22 H 1.48503 * 109.46928 * 60.00859 * 21 19 17
23 23 H 1.48504 * 109.47216 * 180.02562 * 21 19 17
24 24 H 1.48500 * 109.47513 * 300.00426 * 21 19 17
25 25 C 1.48118 * 127.84348 * 179.70244 * 7 5 4
26 26 C 1.36322 * 107.22843 * 0.02562 * 4 3 2
27 27 C 1.34826 * 124.57093 * 179.69569 * 2 1 3
28 28 O 1.21982 * 127.14516 * 0.02562 * 27 2 1
29 29 H 1.09002 * 109.47391 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.46813 * 240.02463 * 1 2 3
31 31 H 1.09004 * 109.47041 * 120.02590 * 1 2 3
32 32 H 1.09004 * 110.38881 * 338.52269 * 8 7 5
33 33 H 1.08991 * 110.39534 * 100.80330 * 8 7 5
34 34 H 1.08998 * 110.46649 * 29.93832 * 11 9 8
35 35 H 1.09001 * 110.46097 * 152.51277 * 11 9 8
36 36 H 1.09003 * 110.75657 * 80.12806 * 12 11 9
37 37 H 1.09000 * 110.76263 * 203.32276 * 12 11 9
38 38 H 1.09002 * 110.46261 * 156.89501 * 13 12 11
39 39 H 1.08991 * 110.46764 * 279.35149 * 13 12 11
40 40 H 1.09008 * 109.46700 * 300.00071 * 15 14 9
41 41 H 1.08997 * 109.47040 * 59.99277 * 15 14 9
42 42 H 0.96999 * 119.99818 * 359.97438 * 16 15 14
43 43 H 0.97001 * 119.99642 * 179.97438 * 20 19 17
44 44 H 1.08994 * 110.39389 * 259.08724 * 25 7 5
45 45 H 1.08997 * 110.38838 * 21.48012 * 25 7 5
46 46 H 1.07998 * 127.99758 * 179.97438 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 8 2.1510 0.9958 0.0000
4 6 3.4616 0.7084 0.0006
5 6 4.5760 1.6853 0.0013
6 8 5.7264 1.2947 0.0022
7 7 4.3132 3.0073 0.0008
8 6 2.9888 3.6705 0.0003
9 6 3.1533 4.8722 -0.9540
10 1 2.5672 5.7317 -0.6287
11 6 2.7774 4.4296 -2.3821
12 6 4.1023 3.8946 -2.9788
13 6 5.1544 4.8779 -2.4100
14 6 4.6727 5.1744 -0.9531
15 6 4.9693 6.6105 -0.5167
16 7 6.4165 6.8374 -0.5345
17 6 6.9224 8.0593 -0.1794
18 1 6.2544 8.8557 0.1142
19 6 8.2937 8.2741 -0.1957
20 7 9.1076 7.3035 -0.5530
21 14 8.9838 9.9408 0.2894
22 1 8.5885 10.2526 1.6865
23 1 10.4651 9.9116 0.1884
24 1 8.4465 10.9833 -0.6215
25 6 5.2833 4.1266 0.0075
26 6 3.5770 -0.6500 0.0004
27 6 2.2300 -1.1102 0.0059
28 8 1.8473 -2.2684 0.0116
29 1 -0.3634 1.0277 -0.0005
30 1 -0.3633 -0.5135 0.8902
31 1 -0.3633 -0.5143 -0.8898
32 1 2.2236 2.9903 -0.3738
33 1 2.7347 4.0121 1.0036
34 1 2.0270 3.6396 -2.3511
35 1 2.4143 5.2787 -2.9610
36 1 4.2979 2.8786 -2.6358
37 1 4.0800 3.9356 -4.0678
38 1 6.1415 4.4157 -2.3994
39 1 5.1716 5.7977 -2.9945
40 1 4.4836 7.3059 -1.2014
41 1 4.5893 6.7693 0.4925
42 1 7.0163 6.1220 -0.7978
43 1 10.0658 7.4537 -0.5647
44 1 5.3800 4.5394 1.0116
45 1 6.2526 3.7912 -0.3613
46 1 4.4813 -1.2404 0.0003
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112328334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:26:28
Heat of formation + Delta-G solvation = 11.723057 kcal
Electronic energy + Delta-G solvation = -30129.248224 eV
Core-core repulsion = 26023.302839 eV
Total energy + Delta-G solvation = -4105.945384 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-46.25159 -41.87485 -39.92683 -39.37652 -36.51891 -35.62766 -35.26903 -33.47415
-33.42490 -31.18254 -30.96985 -29.15870 -27.28974 -26.54528 -25.64336 -24.72839
-24.01697 -23.42124 -21.17053 -21.08639 -20.08834 -19.53143 -19.41866 -18.80915
-18.18796 -17.52913 -17.28642 -16.51216 -16.33462 -16.05936 -15.90228 -15.56239
-15.20589 -15.04915 -15.00160 -14.86062 -14.81503 -14.33527 -14.23534 -14.12238
-14.04987 -13.65082 -13.33652 -13.05800 -12.92226 -12.67283 -12.23231 -12.05995
-11.92728 -11.86409 -11.74977 -11.59866 -11.55289 -11.47114 -11.45259 -11.31283
-11.14494 -10.87485 -9.91217 -9.68898 -8.93667 -7.90458 -5.18352 -0.66361
0.46585 1.34058 1.41681 1.49647 1.51944 1.57994 1.77529 2.09582
2.59045 3.11485 3.35677 3.42763 3.49972 3.57266 3.61076 3.82410
4.12784 4.18218 4.21401 4.23662 4.29189 4.36041 4.40233 4.44651
4.54265 4.61136 4.66446 4.67321 4.70055 4.70122 4.82467 4.94473
4.96097 5.01481 5.07608 5.15446 5.22838 5.30173 5.34831 5.43051
5.46195 5.55109 6.14965 6.31212 6.37710 6.59198 6.82407 7.38338
8.16132 8.36979 9.32865
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.022951 B = 0.002790 C = 0.002659
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.703482 B =10034.013532 C =10527.612392
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.442 5.442
3 O 0.021 5.979
4 C 0.048 3.952
5 C 0.616 3.384
6 O -0.539 6.539
7 N -0.596 5.596
8 C 0.099 3.901
9 C -0.089 4.089
10 H 0.122 0.878
11 C -0.106 4.106
12 C -0.119 4.119
13 C -0.106 4.106
14 C -0.068 4.068
15 C 0.174 3.826
16 N -0.744 5.744
17 C -0.239 4.239
18 H 0.079 0.921
19 C -0.077 4.077
20 N -0.971 5.971
21 Si 0.970 3.030
22 H -0.278 1.278
23 H -0.301 1.301
24 H -0.278 1.278
25 C 0.127 3.873
26 C -0.248 4.248
27 C 0.472 3.528
28 O -0.563 6.563
29 H 0.134 0.866
30 H 0.098 0.902
31 H 0.099 0.901
32 H 0.109 0.891
33 H 0.101 0.899
34 H 0.089 0.911
35 H 0.081 0.919
36 H 0.049 0.951
37 H 0.072 0.928
38 H 0.035 0.965
39 H 0.060 0.940
40 H 0.032 0.968
41 H 0.032 0.968
42 H 0.373 0.627
43 H 0.249 0.751
44 H 0.077 0.923
45 H 0.057 0.943
46 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.071 -9.846 -0.757 26.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.203 5.203
3 O 0.009 5.991
4 C -0.011 4.011
5 C 0.401 3.599
6 O -0.417 6.417
7 N -0.327 5.327
8 C -0.022 4.022
9 C -0.108 4.108
10 H 0.140 0.860
11 C -0.143 4.143
12 C -0.156 4.156
13 C -0.143 4.143
14 C -0.070 4.070
15 C 0.048 3.952
16 N -0.386 5.386
17 C -0.371 4.371
18 H 0.097 0.903
19 C -0.269 4.269
20 N -0.622 5.622
21 Si 0.799 3.201
22 H -0.204 1.204
23 H -0.228 1.228
24 H -0.204 1.204
25 C 0.005 3.995
26 C -0.273 4.273
27 C 0.271 3.729
28 O -0.448 6.448
29 H 0.153 0.847
30 H 0.117 0.883
31 H 0.118 0.882
32 H 0.127 0.873
33 H 0.119 0.881
34 H 0.107 0.893
35 H 0.100 0.900
36 H 0.067 0.933
37 H 0.090 0.910
38 H 0.054 0.946
39 H 0.078 0.922
40 H 0.050 0.950
41 H 0.050 0.950
42 H 0.205 0.795
43 H 0.057 0.943
44 H 0.095 0.905
45 H 0.076 0.924
46 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -24.040 -10.364 -0.691 26.188
hybrid contribution 1.797 0.435 0.156 1.855
sum -22.243 -9.929 -0.535 24.364
Atomic orbital electron populations
1.22644 0.67644 1.07885 1.05754 1.46440 1.07173 0.99098 1.67608
1.84126 1.14399 1.20427 1.80128 1.22860 0.81861 0.95198 1.01186
1.16354 0.85303 0.80242 0.77957 1.90912 1.20166 1.78377 1.52256
1.48877 1.11465 1.03322 1.69037 1.23078 0.83111 0.94231 1.01793
1.22741 0.93469 0.98179 0.96425 0.85965 1.22410 0.96372 1.01458
0.94076 1.22412 0.95475 0.97501 1.00226 1.22635 0.97913 0.99108
0.94683 1.22567 0.96246 0.93527 0.94619 1.20740 0.84341 0.92243
0.97920 1.42556 1.02423 1.12240 1.81395 1.19602 0.90757 0.91073
1.35626 0.90269 1.25521 0.96743 1.00968 1.03663 1.69817 1.02369
1.33510 1.56494 0.85268 0.76474 0.80039 0.78310 1.20383 1.22787
1.20377 1.22408 0.92112 0.84798 1.00192 1.23429 1.00070 0.93640
1.10191 1.18325 0.87010 0.85644 0.81948 1.90944 1.79653 1.17343
1.56814 0.84728 0.88325 0.88213 0.87326 0.88119 0.89291 0.90013
0.93264 0.90953 0.94571 0.92167 0.95030 0.94980 0.79510 0.94259
0.90455 0.92445 0.79004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.53 11.18 127.77 1.43 1.96 16
2 N -0.44 -6.83 3.68 -492.73 -1.82 -8.65 16
3 O 0.02 0.31 8.13 70.34 0.57 0.89 16
4 C 0.05 1.02 7.08 24.47 0.17 1.19 16
5 C 0.62 16.41 7.94 86.89 0.69 17.10 16
6 O -0.54 -18.99 17.16 -3.69 -0.06 -19.06 16
7 N -0.60 -14.01 2.59 -810.62 -2.10 -16.11 16
8 C 0.10 1.45 6.15 86.52 0.53 1.98 16
9 C -0.09 -1.47 3.56 -9.29 -0.03 -1.50 16
10 H 0.12 1.57 7.88 -2.39 -0.02 1.55 16
11 C -0.11 -1.56 6.27 31.62 0.20 -1.36 16
12 C -0.12 -2.56 6.54 31.85 0.21 -2.35 16
13 C -0.11 -3.09 5.48 32.37 0.18 -2.91 16
14 C -0.07 -1.84 0.69 -49.80 -0.03 -1.88 16
15 C 0.17 5.97 5.20 86.38 0.45 6.41 16
16 N -0.74 -35.29 5.27 -343.45 -1.81 -37.10 16
17 C -0.24 -12.72 9.99 84.03 0.84 -11.88 16
18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16
19 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16
20 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16
21 Si 0.97 45.41 29.55 68.60 2.03 47.44 16
22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16
24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
25 C 0.13 3.80 5.66 86.65 0.49 4.29 16
26 C -0.25 -5.73 10.94 22.84 0.25 -5.48 16
27 C 0.47 11.13 8.02 85.26 0.68 11.82 16
28 O -0.56 -17.19 17.92 -5.26 -0.09 -17.28 16
29 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16
30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.10 0.45 8.14 -2.38 -0.02 0.44 16
32 H 0.11 1.11 4.87 -2.38 -0.01 1.10 16
33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.09 0.90 7.44 -2.39 -0.02 0.89 16
35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
36 H 0.05 1.16 7.76 -2.39 -0.02 1.14 16
37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
38 H 0.04 1.26 7.54 -2.39 -0.02 1.25 16
39 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16
40 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16
41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
42 H 0.37 19.41 7.17 -92.71 -0.66 18.75 16
43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16
44 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16
45 H 0.06 2.13 7.26 -2.39 -0.02 2.11 16
46 H 0.19 4.32 8.06 -2.91 -0.02 4.29 16
Total: -1.00 -76.59 374.12 3.86 -72.73
By element:
Atomic # 1 Polarization: 22.23 SS G_CDS: 0.34 Total: 22.57 kcal
Atomic # 6 Polarization: 7.01 SS G_CDS: 6.52 Total: 13.53 kcal
Atomic # 7 Polarization: -115.38 SS G_CDS: -5.44 Total: -120.82 kcal
Atomic # 8 Polarization: -35.86 SS G_CDS: 0.41 Total: -35.45 kcal
Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal
Total: -76.59 3.86 -72.73 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112328334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.450 kcal
(2) G-P(sol) polarization free energy of solvation -76.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds