Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 119.99984 * 2 1 4 4 C 1.50704 * 109.47536 * 90.00220 * 3 2 1 5 5 C 1.34509 * 125.79237 * 89.99504 * 4 3 2 6 6 C 1.41377 * 106.84068 * 180.02562 * 5 4 3 7 7 C 1.34510 * 106.84410 * 0.02562 * 6 5 4 8 8 O 1.34303 * 108.41800 * 359.73320 * 7 6 5 9 9 C 1.34776 * 119.99922 * 179.97438 * 2 1 3 10 10 O 1.21349 * 120.00013 * 182.95393 * 9 2 1 11 11 C 1.49451 * 120.00285 * 2.96309 * 9 2 1 12 12 O 1.21344 * 119.99733 * 4.28464 * 11 9 2 13 13 N 1.34772 * 120.00098 * 184.28767 * 11 9 2 14 14 C 1.46502 * 120.00167 * 179.97438 * 13 11 9 15 15 C 1.53036 * 109.46110 * 275.03053 * 14 13 11 16 16 C 1.53194 * 109.31454 * 178.59689 * 15 14 13 17 17 N 1.46932 * 108.76321 * 54.65513 * 16 15 14 18 18 C 1.36931 * 120.63353 * 126.40631 * 17 16 15 19 19 H 1.08004 * 119.99625 * 324.58182 * 18 17 16 20 20 C 1.38806 * 120.00295 * 144.57863 * 18 17 16 21 21 N 1.31624 * 120.00140 * 4.12969 * 20 18 17 22 22 Si 1.86799 * 120.00465 * 184.12857 * 20 18 17 23 23 H 1.48497 * 109.47477 * 89.99566 * 22 20 18 24 24 H 1.48497 * 109.47315 * 210.00330 * 22 20 18 25 25 H 1.48508 * 109.46738 * 329.99913 * 22 20 18 26 26 C 1.46933 * 118.73531 * 306.38570 * 17 16 15 27 27 C 1.53041 * 109.46210 * 154.97302 * 14 13 11 28 28 H 1.09008 * 109.46841 * 263.95685 * 1 2 3 29 29 H 1.08996 * 109.47157 * 143.96102 * 1 2 3 30 30 H 1.08995 * 109.47119 * 23.95713 * 1 2 3 31 31 H 1.08999 * 109.47443 * 210.00046 * 3 2 1 32 32 H 1.09000 * 109.47111 * 329.99704 * 3 2 1 33 33 H 1.08006 * 126.57964 * 0.04356 * 5 4 3 34 34 H 1.08009 * 126.57768 * 179.97438 * 6 5 4 35 35 H 1.07999 * 125.79374 * 180.02562 * 7 6 5 36 36 H 0.97001 * 120.00300 * 359.97438 * 13 11 9 37 37 H 1.09003 * 109.45316 * 35.00161 * 14 13 11 38 38 H 1.09007 * 109.49976 * 298.55965 * 15 14 13 39 39 H 1.08998 * 109.50081 * 58.65852 * 15 14 13 40 40 H 1.08998 * 109.59549 * 294.87155 * 16 15 14 41 41 H 1.08993 * 109.70337 * 174.50117 * 16 15 14 42 42 H 0.96990 * 120.00520 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58306 * 293.81750 * 26 17 16 44 44 H 1.09006 * 109.70121 * 173.46786 * 26 17 16 45 45 H 1.08999 * 109.49353 * 301.33721 * 27 14 13 46 46 H 1.09001 * 109.49721 * 61.40413 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 3.5247 1.3853 2.1625 6 6 3.3497 2.0005 3.4233 7 6 2.1770 2.6576 3.3770 8 8 1.6383 2.4790 2.1598 9 6 2.1388 -1.1672 0.0005 10 8 3.3511 -1.1679 0.0547 11 6 1.3931 -2.4607 -0.0658 12 8 0.1869 -2.4595 -0.1985 13 7 2.0603 -3.6284 0.0218 14 6 1.3292 -4.8964 -0.0427 15 6 0.8094 -5.2566 1.3509 16 6 0.0159 -6.5647 1.2732 17 7 0.8640 -7.5963 0.6605 18 6 1.0680 -8.7956 1.2889 19 1 1.1375 -8.8359 2.3660 20 6 1.1855 -9.9596 0.5418 21 7 1.1823 -9.9008 -0.7731 22 14 1.3482 -11.6095 1.4024 23 1 -0.0018 -12.1856 1.6278 24 1 2.1455 -12.5330 0.5558 25 1 2.0304 -11.4216 2.7081 26 6 1.4887 -7.3166 -0.6397 27 6 2.2654 -5.9999 -0.5405 28 1 -0.3633 -0.1082 1.0220 29 1 -0.3633 -0.8309 -0.6046 30 1 -0.3633 0.9391 -0.4173 31 1 3.1498 1.1384 -0.5138 32 1 1.6084 2.0283 -0.5139 33 1 4.3619 0.7767 1.8539 34 1 4.0273 1.9514 4.2630 35 1 1.7445 3.2353 4.1805 36 1 3.0245 -3.6294 0.1275 37 1 0.4885 -4.7962 -0.7292 38 1 1.6511 -5.3814 2.0322 39 1 0.1614 -4.4593 1.7148 40 1 -0.8758 -6.4157 0.6643 41 1 -0.2744 -6.8785 2.2758 42 1 1.2648 -10.7140 -1.2952 43 1 0.7170 -7.2290 -1.4045 44 1 2.1717 -8.1250 -0.9007 45 1 2.6536 -5.7317 -1.5231 46 1 3.0935 -6.1172 0.1584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117327120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -12.546489 kcal Electronic energy + Delta-G solvation = -29001.140119 eV Core-core repulsion = 24894.142328 eV Total energy + Delta-G solvation = -4106.997791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81966 -40.85896 -38.87226 -37.37690 -36.25178 -34.45071 -33.25453 -32.17382 -31.24456 -30.17816 -29.48756 -27.34904 -26.93492 -25.26257 -23.54925 -22.25250 -21.98360 -21.62011 -20.77033 -20.10863 -19.24248 -17.90752 -17.72728 -17.17249 -16.71583 -16.35396 -16.05390 -15.70958 -15.09900 -14.95352 -14.75749 -14.19677 -14.07050 -13.74188 -13.52683 -13.24487 -13.18898 -13.04239 -13.01770 -12.91035 -12.74651 -12.60803 -12.39892 -12.01345 -11.53625 -11.32505 -10.94920 -10.92135 -10.81697 -10.47983 -10.31156 -10.17379 -10.02502 -9.93152 -9.68581 -9.38904 -9.23465 -8.86629 -8.71101 -8.48075 -6.59556 -5.82047 -3.34911 1.27790 1.39916 2.17876 2.52601 2.70161 3.18840 3.36030 3.42770 3.43576 3.46963 4.30140 4.36902 4.45824 4.61459 4.79684 4.93667 4.97444 5.11184 5.30148 5.37082 5.44274 5.46700 5.54570 5.55265 5.70615 5.75073 5.80618 5.81429 5.95895 6.04920 6.22449 6.23655 6.30728 6.47493 6.51207 6.57743 6.69482 6.75371 6.81156 6.88899 6.95467 7.28065 7.36024 7.64836 7.75312 7.76698 8.05062 8.49865 9.21474 9.79873 10.39592 11.24548 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.002226 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.899778 B =12573.174558 C =12896.050606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.587 5.587 3 C 0.195 3.805 4 C -0.043 4.043 5 C -0.181 4.181 6 C -0.217 4.217 7 C -0.037 4.037 8 O -0.175 6.175 9 C 0.509 3.491 10 O -0.517 6.517 11 C 0.505 3.495 12 O -0.517 6.517 13 N -0.687 5.687 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.149 3.851 17 N -0.595 5.595 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.009 3.991 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.170 3.830 27 C -0.149 4.149 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.203 0.797 36 H 0.408 0.592 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.255 0.745 43 H 0.019 0.981 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 24.998 2.347 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.321 5.321 3 C 0.073 3.927 4 C -0.094 4.094 5 C -0.201 4.201 6 C -0.236 4.236 7 C -0.105 4.105 8 O -0.071 6.071 9 C 0.292 3.708 10 O -0.392 6.392 11 C 0.286 3.714 12 O -0.395 6.395 13 N -0.338 5.338 14 C 0.045 3.955 15 C -0.181 4.181 16 C 0.022 3.978 17 N -0.317 5.317 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.044 3.956 27 C -0.189 4.189 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.219 0.781 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.124 0.876 45 H 0.074 0.926 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.669 24.919 2.037 25.058 hybrid contribution 0.710 -0.713 0.856 1.321 sum 2.380 24.206 2.893 24.494 Atomic orbital electron populations 1.22642 0.76974 1.05025 1.03900 1.47799 1.08563 1.04408 1.71311 1.19910 0.99924 0.84859 0.88003 1.22814 0.91769 0.98802 0.95999 1.21783 1.00471 1.03784 0.94041 1.21910 0.99211 1.03103 0.99411 1.24070 0.95571 1.04260 0.86640 1.84006 1.44993 1.55330 1.22723 1.20459 0.87561 0.85389 0.77356 1.90737 1.13449 1.87270 1.47762 1.19909 0.87633 0.85161 0.78733 1.90604 1.13626 1.86445 1.48802 1.46274 1.12087 1.05409 1.70020 1.21278 0.95394 0.80384 0.98395 1.22408 1.00562 0.99361 0.95730 1.20887 0.92019 0.87532 0.97405 1.44042 1.52962 1.13774 1.20961 1.19156 1.44526 0.83602 0.91097 0.91816 1.25328 1.00023 0.98110 0.95518 1.69861 1.53967 1.27092 1.04002 0.86265 0.77662 0.83871 0.78812 1.21254 1.21651 1.20440 1.20967 0.95556 0.92237 0.86867 1.22623 0.98967 0.97544 0.99749 0.92465 0.86057 0.91462 0.86483 0.88152 0.83050 0.83383 0.78070 0.75645 0.89535 0.92156 0.92709 0.96077 0.92444 0.93423 0.96308 0.87585 0.92598 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 9.74 59.84 0.58 1.13 16 2 N -0.59 -6.38 2.86 -183.47 -0.52 -6.90 16 3 C 0.20 1.72 5.95 -5.19 -0.03 1.69 16 4 C -0.04 -0.45 6.90 -35.62 -0.25 -0.69 16 5 C -0.18 -1.96 10.81 -39.71 -0.43 -2.39 16 6 C -0.22 -2.04 10.91 -39.71 -0.43 -2.47 16 7 C -0.04 -0.31 12.09 29.41 0.36 0.04 16 8 O -0.17 -1.79 10.65 5.70 0.06 -1.73 16 9 C 0.51 6.73 7.73 -11.59 -0.09 6.64 16 10 O -0.52 -7.43 16.09 5.50 0.09 -7.34 16 11 C 0.51 7.38 7.76 -11.59 -0.09 7.29 16 12 O -0.52 -8.23 12.74 5.50 0.07 -8.16 16 13 N -0.69 -10.11 5.07 -54.20 -0.27 -10.39 16 14 C 0.15 2.52 2.42 -67.89 -0.16 2.36 16 15 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 16 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 17 N -0.59 -14.62 3.00 -172.32 -0.52 -15.14 16 18 C -0.25 -6.85 9.55 -15.06 -0.14 -6.99 16 19 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 20 C 0.01 0.24 5.32 -17.43 -0.09 0.15 16 21 N -0.90 -25.54 10.62 55.49 0.59 -24.95 16 22 Si 0.90 21.34 29.56 -169.99 -5.02 16.31 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.17 3.94 5.26 -3.71 -0.02 3.92 16 27 C -0.15 -2.72 5.55 -26.61 -0.15 -2.86 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.12 1.38 5.11 -52.36 -0.27 1.11 16 30 H 0.07 0.47 7.83 -51.93 -0.41 0.07 16 31 H 0.12 0.99 7.46 -51.93 -0.39 0.60 16 32 H 0.10 0.62 7.85 -51.93 -0.41 0.21 16 33 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.41 5.52 8.08 -40.82 -0.33 5.19 16 37 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.11 2.76 5.92 -51.93 -0.31 2.45 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -31.08 379.14 -7.63 -38.71 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.69 Total: 5.64 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.12 Total: 8.23 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.73 Total: -57.38 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.22 Total: -17.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.08 -7.63 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117327120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.163 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds