Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 119.99984 * 2 1 4 4 C 1.50704 * 109.47536 * 90.00220 * 3 2 1 5 5 C 1.34509 * 125.79237 * 89.99504 * 4 3 2 6 6 C 1.41377 * 106.84068 * 180.02562 * 5 4 3 7 7 C 1.34510 * 106.84410 * 0.02562 * 6 5 4 8 8 O 1.34303 * 108.41800 * 359.73320 * 7 6 5 9 9 C 1.34776 * 119.99922 * 179.97438 * 2 1 3 10 10 O 1.21349 * 120.00013 * 182.95393 * 9 2 1 11 11 C 1.49451 * 120.00285 * 2.96309 * 9 2 1 12 12 O 1.21344 * 119.99733 * 4.28464 * 11 9 2 13 13 N 1.34772 * 120.00098 * 184.28767 * 11 9 2 14 14 C 1.46502 * 120.00167 * 179.97438 * 13 11 9 15 15 C 1.53036 * 109.46110 * 275.03053 * 14 13 11 16 16 C 1.53194 * 109.31454 * 178.59689 * 15 14 13 17 17 N 1.46932 * 108.76321 * 54.65513 * 16 15 14 18 18 C 1.36931 * 120.63353 * 126.40631 * 17 16 15 19 19 H 1.08004 * 119.99625 * 324.58182 * 18 17 16 20 20 C 1.38806 * 120.00295 * 144.57863 * 18 17 16 21 21 N 1.31624 * 120.00140 * 4.12969 * 20 18 17 22 22 Si 1.86799 * 120.00465 * 184.12857 * 20 18 17 23 23 H 1.48497 * 109.47477 * 89.99566 * 22 20 18 24 24 H 1.48497 * 109.47315 * 210.00330 * 22 20 18 25 25 H 1.48508 * 109.46738 * 329.99913 * 22 20 18 26 26 C 1.46933 * 118.73531 * 306.38570 * 17 16 15 27 27 C 1.53041 * 109.46210 * 154.97302 * 14 13 11 28 28 H 1.09008 * 109.46841 * 263.95685 * 1 2 3 29 29 H 1.08996 * 109.47157 * 143.96102 * 1 2 3 30 30 H 1.08995 * 109.47119 * 23.95713 * 1 2 3 31 31 H 1.08999 * 109.47443 * 210.00046 * 3 2 1 32 32 H 1.09000 * 109.47111 * 329.99704 * 3 2 1 33 33 H 1.08006 * 126.57964 * 0.04356 * 5 4 3 34 34 H 1.08009 * 126.57768 * 179.97438 * 6 5 4 35 35 H 1.07999 * 125.79374 * 180.02562 * 7 6 5 36 36 H 0.97001 * 120.00300 * 359.97438 * 13 11 9 37 37 H 1.09003 * 109.45316 * 35.00161 * 14 13 11 38 38 H 1.09007 * 109.49976 * 298.55965 * 15 14 13 39 39 H 1.08998 * 109.50081 * 58.65852 * 15 14 13 40 40 H 1.08998 * 109.59549 * 294.87155 * 16 15 14 41 41 H 1.08993 * 109.70337 * 174.50117 * 16 15 14 42 42 H 0.96990 * 120.00520 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58306 * 293.81750 * 26 17 16 44 44 H 1.09006 * 109.70121 * 173.46786 * 26 17 16 45 45 H 1.08999 * 109.49353 * 301.33721 * 27 14 13 46 46 H 1.09001 * 109.49721 * 61.40413 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 3.5247 1.3853 2.1625 6 6 3.3497 2.0005 3.4233 7 6 2.1770 2.6576 3.3770 8 8 1.6383 2.4790 2.1598 9 6 2.1388 -1.1672 0.0005 10 8 3.3511 -1.1679 0.0547 11 6 1.3931 -2.4607 -0.0658 12 8 0.1869 -2.4595 -0.1985 13 7 2.0603 -3.6284 0.0218 14 6 1.3292 -4.8964 -0.0427 15 6 0.8094 -5.2566 1.3509 16 6 0.0159 -6.5647 1.2732 17 7 0.8640 -7.5963 0.6605 18 6 1.0680 -8.7956 1.2889 19 1 1.1375 -8.8359 2.3660 20 6 1.1855 -9.9596 0.5418 21 7 1.1823 -9.9008 -0.7731 22 14 1.3482 -11.6095 1.4024 23 1 -0.0018 -12.1856 1.6278 24 1 2.1455 -12.5330 0.5558 25 1 2.0304 -11.4216 2.7081 26 6 1.4887 -7.3166 -0.6397 27 6 2.2654 -5.9999 -0.5405 28 1 -0.3633 -0.1082 1.0220 29 1 -0.3633 -0.8309 -0.6046 30 1 -0.3633 0.9391 -0.4173 31 1 3.1498 1.1384 -0.5138 32 1 1.6084 2.0283 -0.5139 33 1 4.3619 0.7767 1.8539 34 1 4.0273 1.9514 4.2630 35 1 1.7445 3.2353 4.1805 36 1 3.0245 -3.6294 0.1275 37 1 0.4885 -4.7962 -0.7292 38 1 1.6511 -5.3814 2.0322 39 1 0.1614 -4.4593 1.7148 40 1 -0.8758 -6.4157 0.6643 41 1 -0.2744 -6.8785 2.2758 42 1 1.2648 -10.7140 -1.2952 43 1 0.7170 -7.2290 -1.4045 44 1 2.1717 -8.1250 -0.9007 45 1 2.6536 -5.7317 -1.5231 46 1 3.0935 -6.1172 0.1584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117327120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -32.312618 kcal Electronic energy + Delta-G solvation = -29001.997243 eV Core-core repulsion = 24894.142328 eV Total energy + Delta-G solvation = -4107.854914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52832 -41.94934 -40.08433 -38.85858 -37.25823 -35.94778 -33.99005 -33.92778 -31.98786 -31.82470 -31.22162 -28.09806 -27.99611 -26.89476 -24.86234 -23.89291 -23.08497 -22.68952 -21.68256 -21.29243 -20.67540 -19.08613 -18.61135 -18.45945 -18.06886 -17.31311 -17.03121 -16.90725 -16.65254 -16.13194 -15.83502 -15.52330 -15.31070 -15.16975 -14.97276 -14.74259 -14.29070 -14.12851 -14.06737 -13.89330 -13.77984 -13.65401 -13.55171 -13.26863 -12.80756 -12.75118 -12.70812 -12.54255 -12.32530 -12.17326 -12.01611 -11.86806 -11.63437 -11.37292 -10.91695 -10.54352 -10.49193 -10.25865 -10.02898 -9.47410 -8.57588 -7.86830 -5.42882 0.26182 0.58309 1.29702 1.48415 1.49880 1.58205 1.69918 1.96041 2.16206 2.46344 2.50470 3.22404 3.30846 3.68954 3.69714 3.85830 3.99828 4.00668 4.09866 4.25531 4.29242 4.31337 4.45566 4.45830 4.61476 4.65572 4.74387 4.85262 4.87258 4.95732 4.98241 5.00518 5.08095 5.14532 5.14742 5.15683 5.30424 5.44037 5.52722 5.54120 5.65112 5.77934 5.82726 6.13401 6.19945 6.46784 6.61000 6.90398 7.18267 7.84124 8.38676 9.17496 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.002226 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.899778 B =12573.174558 C =12896.050606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.579 5.579 3 C 0.193 3.807 4 C -0.054 4.054 5 C -0.202 4.202 6 C -0.237 4.237 7 C -0.030 4.030 8 O -0.183 6.183 9 C 0.510 3.490 10 O -0.533 6.533 11 C 0.505 3.495 12 O -0.530 6.530 13 N -0.683 5.683 14 C 0.161 3.839 15 C -0.126 4.126 16 C 0.147 3.853 17 N -0.612 5.612 18 C -0.266 4.266 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.175 3.825 27 C -0.133 4.133 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.240 0.760 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.058 0.942 42 H 0.252 0.748 43 H -0.002 1.002 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 27.113 3.311 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.312 5.312 3 C 0.072 3.928 4 C -0.104 4.104 5 C -0.222 4.222 6 C -0.256 4.256 7 C -0.098 4.098 8 O -0.079 6.079 9 C 0.293 3.707 10 O -0.409 6.409 11 C 0.286 3.714 12 O -0.409 6.409 13 N -0.334 5.334 14 C 0.057 3.943 15 C -0.167 4.167 16 C 0.021 3.979 17 N -0.336 5.336 18 C -0.396 4.396 19 H 0.082 0.918 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.049 3.951 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.256 0.744 36 H 0.253 0.747 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.617 27.087 3.014 27.302 hybrid contribution 0.678 -1.272 0.591 1.558 sum 2.295 25.814 3.604 26.166 Atomic orbital electron populations 1.22637 0.76195 1.06185 1.03370 1.47879 1.09114 1.04386 1.69794 1.20155 1.00556 0.84395 0.87691 1.22974 0.91769 0.99112 0.96578 1.21936 1.00734 1.04337 0.95204 1.22197 1.00271 1.03612 0.99473 1.24819 0.95041 1.03356 0.86559 1.84009 1.45151 1.55309 1.23401 1.20144 0.87252 0.85482 0.77835 1.90738 1.13864 1.87402 1.48936 1.20213 0.87531 0.85600 0.78039 1.90623 1.14281 1.86819 1.49130 1.46028 1.12338 1.04715 1.70344 1.20898 0.94807 0.81095 0.97462 1.22216 1.00281 0.97832 0.96327 1.20968 0.91884 0.88082 0.96994 1.44279 1.54019 1.14087 1.21227 1.19450 1.44041 0.84755 0.91357 0.91762 1.26045 1.00395 1.01275 0.96150 1.70047 1.55120 1.27451 1.05155 0.85260 0.77364 0.79733 0.78003 1.21257 1.21872 1.19425 1.20725 0.94675 0.93732 0.85983 1.22338 0.98385 0.95402 1.01141 0.93122 0.87621 0.88189 0.86286 0.84919 0.83956 0.81947 0.74423 0.74747 0.90679 0.92077 0.91555 0.96604 0.92297 0.93888 0.98403 0.90656 0.90592 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 9.74 127.77 1.25 2.24 16 2 N -0.58 -11.47 2.86 -852.74 -2.44 -13.91 16 3 C 0.19 2.99 5.95 85.64 0.51 3.50 16 4 C -0.05 -1.03 6.90 24.83 0.17 -0.85 16 5 C -0.20 -4.22 10.81 22.19 0.24 -3.98 16 6 C -0.24 -4.07 10.91 22.19 0.24 -3.83 16 7 C -0.03 -0.43 12.09 66.97 0.81 0.38 16 8 O -0.18 -3.32 10.65 -2.50 -0.03 -3.35 16 9 C 0.51 12.81 7.73 87.27 0.67 13.48 16 10 O -0.53 -14.74 16.09 -3.24 -0.05 -14.80 16 11 C 0.51 14.15 7.76 87.27 0.68 14.82 16 12 O -0.53 -16.31 12.74 -3.23 -0.04 -16.35 16 13 N -0.68 -19.24 5.07 -443.75 -2.25 -21.49 16 14 C 0.16 5.36 2.42 45.02 0.11 5.47 16 15 C -0.13 -4.41 5.65 30.67 0.17 -4.24 16 16 C 0.15 6.16 6.52 86.36 0.56 6.72 16 17 N -0.61 -30.51 3.00 -699.08 -2.10 -32.61 16 18 C -0.27 -14.46 9.55 84.03 0.80 -13.66 16 19 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 20 C -0.04 -2.37 5.32 84.86 0.45 -1.91 16 21 N -0.93 -53.89 10.62 21.65 0.23 -53.66 16 22 Si 0.97 44.26 29.56 68.60 2.03 46.28 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.18 8.29 5.26 86.36 0.45 8.74 16 27 C -0.13 -4.79 5.55 30.67 0.17 -4.62 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.11 2.25 5.11 -9.16 -0.05 2.20 16 30 H 0.10 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.12 1.81 7.46 -2.39 -0.02 1.79 16 32 H 0.13 1.18 7.85 -2.39 -0.02 1.16 16 33 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.24 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.42 10.66 8.08 -92.71 -0.75 9.91 16 37 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 38 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 42 H 0.25 14.09 8.31 -92.72 -0.77 13.32 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.08 4.05 5.92 -2.38 -0.01 4.03 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -67.55 379.14 2.87 -64.69 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.22 Total: 22.95 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 7.29 Total: 22.25 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -6.55 Total: -121.67 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.12 Total: -34.50 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.55 2.87 -64.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117327120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.375 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds