Wall clock time and date at job start Tue Mar 31 2020 18:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46288 * 113.99905 * 2 1 4 4 C 1.46893 * 111.00379 * 116.04570 * 3 2 1 5 5 C 1.46901 * 110.99800 * 239.99806 * 3 2 1 6 6 C 1.53006 * 109.47222 * 174.99932 * 5 3 2 7 7 N 1.46499 * 109.46968 * 180.02562 * 6 5 3 8 8 C 1.34781 * 119.99851 * 180.02562 * 7 6 5 9 9 O 1.21359 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.49354 * 120.00058 * 179.97438 * 8 7 6 11 11 O 1.21376 * 119.99810 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00058 * 179.97438 * 10 8 7 13 13 C 1.39715 * 119.99781 * 185.27575 * 12 10 8 14 14 C 1.38934 * 120.07394 * 213.32338 * 13 12 10 15 15 C 1.38098 * 119.92297 * 180.02562 * 14 13 12 16 16 C 1.38295 * 120.07470 * 0.03068 * 15 14 13 17 17 C 1.50697 * 119.91952 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47160 * 90.00090 * 17 16 15 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99832 * 180.27507 * 18 17 16 21 21 N 1.31516 * 120.00157 * 359.71894 * 20 18 17 22 22 Si 1.86797 * 119.99786 * 179.72367 * 20 18 17 23 23 H 1.48501 * 109.47462 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47007 * 119.99830 * 22 20 18 25 25 H 1.48501 * 109.47298 * 239.99676 * 22 20 18 26 26 C 1.38285 * 120.15328 * 0.24526 * 16 15 14 27 27 C 1.38095 * 120.07904 * 359.45568 * 26 16 15 28 28 H 1.08999 * 109.47352 * 60.00455 * 1 2 3 29 29 H 1.09004 * 109.47381 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47408 * 300.00328 * 1 2 3 31 31 H 1.09004 * 109.47815 * 183.95440 * 4 3 2 32 32 H 1.09001 * 109.47052 * 303.95134 * 4 3 2 33 33 H 1.09000 * 109.47189 * 63.94943 * 4 3 2 34 34 H 1.09001 * 109.47341 * 54.99883 * 5 3 2 35 35 H 1.09001 * 109.47557 * 294.99906 * 5 3 2 36 36 H 1.09003 * 109.47133 * 60.00269 * 6 5 3 37 37 H 1.08998 * 109.47148 * 299.99719 * 6 5 3 38 38 H 0.96994 * 120.00678 * 359.97438 * 7 6 5 39 39 H 0.97001 * 119.99339 * 5.27650 * 12 10 8 40 40 H 1.07996 * 120.03554 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.95994 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47609 * 329.99696 * 17 16 15 43 43 H 1.09000 * 109.46807 * 209.99744 * 17 16 15 44 44 H 0.97000 * 120.00314 * 180.02562 * 21 20 18 45 45 H 1.08002 * 119.96303 * 179.72578 * 26 16 15 46 46 H 1.08002 * 120.04594 * 180.24674 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3364 0.0000 4 6 2.7882 1.5725 1.2321 5 6 2.8646 1.5384 -1.1877 6 6 3.3674 2.9832 -1.2170 7 7 4.2052 3.1847 -2.4018 8 6 4.7618 4.3895 -2.6365 9 8 4.5694 5.3073 -1.8660 10 6 5.6164 4.5949 -3.8440 11 8 5.8092 3.6769 -4.6143 12 7 6.1726 5.7999 -4.0790 13 6 6.8801 6.0238 -5.2628 14 6 7.9741 6.8802 -5.2687 15 6 8.6708 7.0996 -6.4407 16 6 8.2803 6.4686 -7.6077 17 6 9.0427 6.7111 -8.8847 18 6 10.1533 5.6997 -9.0065 19 1 10.2933 4.9560 -8.2359 20 6 10.9945 5.7277 -10.0985 21 7 10.8243 6.6336 -11.0367 22 14 12.3759 4.4790 -10.2456 23 1 12.3538 3.5752 -9.0675 24 1 12.1926 3.6818 -11.4851 25 1 13.6798 5.1874 -10.3010 26 6 7.1884 5.6201 -7.6066 27 6 6.4908 5.3912 -6.4369 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1610 2.5968 1.2379 32 1 2.1421 1.4162 2.0959 33 1 3.6286 0.8797 1.2768 34 1 2.2792 1.3392 -2.0853 35 1 3.7156 0.8583 -1.1506 36 1 3.9529 3.1824 -0.3194 37 1 2.5165 3.6633 -1.2542 38 1 4.3599 2.4509 -3.0170 39 1 6.0817 6.5115 -3.4262 40 1 8.2793 7.3736 -4.3578 41 1 9.5216 7.7649 -6.4459 42 1 9.4659 7.7154 -8.8702 43 1 8.3676 6.6136 -9.7350 44 1 11.4158 6.6531 -11.8052 45 1 6.8833 5.1324 -8.5207 46 1 5.6405 4.7253 -6.4359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120910978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:18 Heat of formation + Delta-G solvation = -35.080672 kcal Electronic energy + Delta-G solvation = -27103.855441 eV Core-core repulsion = 22995.880495 eV Total energy + Delta-G solvation = -4107.974946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11136 -39.49474 -38.22696 -37.95856 -36.15192 -35.09862 -33.92136 -33.03203 -30.62602 -30.40101 -29.64578 -27.33433 -27.04435 -25.83668 -24.36953 -22.84973 -22.47742 -21.93364 -20.80687 -20.09410 -18.87969 -17.83889 -17.22515 -16.70462 -16.62186 -16.31519 -15.99825 -15.87032 -15.56488 -15.18285 -14.99746 -14.47329 -14.33946 -14.24567 -14.06819 -13.85769 -13.50549 -13.12985 -12.93104 -12.90586 -12.65290 -12.61070 -12.20324 -12.07130 -11.94853 -11.74402 -11.46282 -11.28519 -10.83730 -10.60301 -10.56765 -10.41750 -10.17665 -9.76995 -9.72424 -9.52845 -9.39261 -9.30825 -8.43910 -8.37776 -7.49910 -6.05112 -4.09062 1.02059 1.67393 1.95428 2.00538 2.30376 3.00585 3.29362 3.37135 3.39799 3.42812 4.02027 4.20728 4.33110 4.34881 4.45305 4.51658 4.78292 4.87068 4.93783 5.01358 5.05993 5.20236 5.23392 5.27434 5.28889 5.35583 5.37525 5.46095 5.67702 5.78327 5.92755 5.98896 6.01269 6.11817 6.37500 6.49719 6.55876 6.71403 6.77299 7.08759 7.12678 7.21586 7.44587 7.48634 7.61314 7.81409 7.83986 7.90929 8.30482 8.96683 9.55110 11.04518 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.001703 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.975912 B =16435.820754 C =17129.581586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.261 6.261 3 N -0.365 5.365 4 C 0.001 3.999 5 C 0.028 3.972 6 C 0.123 3.877 7 N -0.701 5.701 8 C 0.515 3.485 9 O -0.517 6.517 10 C 0.501 3.499 11 O -0.499 6.499 12 N -0.634 5.634 13 C 0.095 3.905 14 C -0.135 4.135 15 C -0.107 4.107 16 C -0.037 4.037 17 C 0.046 3.954 18 C -0.512 4.512 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.108 4.108 27 C -0.114 4.114 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.416 0.584 39 H 0.417 0.583 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.124 0.876 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.131 -7.716 23.295 31.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 N -0.133 5.133 4 C -0.147 4.147 5 C -0.101 4.101 6 C -0.001 4.001 7 N -0.356 5.356 8 C 0.296 3.704 9 O -0.392 6.392 10 C 0.282 3.718 11 O -0.374 6.374 12 N -0.280 5.280 13 C 0.003 3.997 14 C -0.155 4.155 15 C -0.126 4.126 16 C -0.037 4.037 17 C 0.010 3.990 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.252 0.748 39 H 0.254 0.746 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.399 -7.542 23.165 31.142 hybrid contribution 1.345 -1.184 -0.012 1.792 sum -18.054 -8.726 23.153 30.629 Atomic orbital electron populations 1.22665 0.80258 1.01936 1.00840 1.90716 1.21194 1.17707 1.96934 1.67433 1.33808 1.09157 1.02917 1.22855 0.97638 1.02071 0.92110 1.22510 0.97151 0.95769 0.94678 1.21358 0.95082 0.95710 0.87937 1.45563 1.49875 1.13022 1.27102 1.20052 0.80937 0.83170 0.86257 1.90781 1.59980 1.41140 1.47267 1.20004 0.81714 0.83565 0.86492 1.90823 1.58632 1.40752 1.47152 1.43005 1.51150 1.13317 1.20478 1.17501 0.95006 1.02389 0.84775 1.20780 0.94710 1.01140 0.98881 1.20916 0.99403 1.00674 0.91615 1.20780 0.93139 0.92230 0.97555 1.18380 0.94361 0.97815 0.88471 1.21110 1.12932 1.14681 1.06272 0.92352 1.25005 0.97748 0.95857 0.95688 1.69964 1.38599 1.34390 1.10339 0.86486 0.81851 0.81336 0.78098 1.19648 1.20928 1.20949 1.21001 0.95807 0.98497 0.97352 1.20982 1.00777 1.00526 0.91110 0.93434 0.89160 0.93587 0.88831 0.90204 0.93846 0.88785 0.92447 0.90352 0.89514 0.74757 0.74558 0.86440 0.85724 0.95177 0.95181 0.92890 0.85832 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 11.51 101.05 1.16 1.38 16 2 O -0.26 -2.14 10.96 -13.92 -0.15 -2.29 16 3 N -0.36 -2.55 5.14 -121.13 -0.62 -3.17 16 4 C 0.00 0.01 9.77 60.06 0.59 0.59 16 5 C 0.03 0.17 5.63 -3.82 -0.02 0.15 16 6 C 0.12 0.81 5.47 -4.04 -0.02 0.79 16 7 N -0.70 -5.73 5.55 -60.76 -0.34 -6.07 16 8 C 0.52 5.64 7.89 -11.63 -0.09 5.55 16 9 O -0.52 -6.45 16.48 5.49 0.09 -6.35 16 10 C 0.50 6.55 7.62 -11.63 -0.09 6.46 16 11 O -0.50 -7.70 14.16 5.47 0.08 -7.63 16 12 N -0.63 -8.27 5.32 -10.29 -0.05 -8.32 16 13 C 0.10 1.53 6.28 -83.75 -0.53 1.00 16 14 C -0.14 -2.15 9.97 -39.37 -0.39 -2.55 16 15 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 16 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 17 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 18 C -0.51 -14.27 9.09 -34.44 -0.31 -14.58 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.11 -2.12 9.69 -39.62 -0.38 -2.50 16 27 C -0.11 -2.01 8.65 -39.38 -0.34 -2.35 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.39 6.33 -51.93 -0.33 0.06 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.50 6.42 -51.93 -0.33 0.17 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.42 3.02 7.94 -40.82 -0.32 2.70 16 39 H 0.42 4.47 8.30 -40.82 -0.34 4.13 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.12 2.09 6.42 -52.49 -0.34 1.75 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -33.12 395.58 -7.61 -40.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.69 Total: 3.28 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.59 Total: -7.19 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.28 Total: -43.04 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.02 Total: -16.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.12 -7.61 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120910978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.641 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds